HEADER TOXIN 13-AUG-15 2N67 TITLE C-TERMINAL DOMAIN OF HEMOLYSIN II-P87M-BMRB COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOLYSIN II; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 319-412); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 GENE: BC_3523; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS HEMOLYSIN, NOVEL FOLD, PORE-FORMING TOXIN, CONFORMATIONAL KEYWDS 2 HETEROGENEITY, TOXIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR A.R.KAPLAN,M.W.MACIEJEWSKI,R.OLSON,A.T.ALEXANDRESCU REVDAT 3 14-JUN-23 2N67 1 SEQADV REVDAT 2 21-JUN-17 2N67 1 JRNL REVDAT 1 17-AUG-16 2N67 0 JRNL AUTH A.R.KAPLAN,K.KAUS,S.DE,R.OLSON,A.T.ALEXANDRESCU JRNL TITL NMR STRUCTURE OF THE BACILLUS CEREUS HEMOLYSIN II C-TERMINAL JRNL TITL 2 DOMAIN REVEALS A NOVEL FOLD. JRNL REF SCI REP V. 7 3277 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28607368 JRNL DOI 10.1038/S41598-017-02917-4 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.R.KAPLAN,M.W.MACIEJEWSKI,R.OLSON,A.T.ALEXANDRESCU REMARK 1 TITL NMR ASSIGNMENTS FOR THE CIS AND TRANS FORMS OF THE HEMOLYSIN REMARK 1 TITL 2 II C-TERMINAL DOMAIN. REMARK 1 REF BIOMOL.NMR ASSIGN. V. 8 419 2014 REMARK 1 REFN ISSN 1874-2718 REMARK 1 PMID 24234348 REMARK 1 DOI 10.1007/S12104-013-9530-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ANALYSIS 2.1, ARIA 2.3 REMARK 3 AUTHORS : CCPN (ANALYSIS), LINGE, O'DONOGHUE AND NILGES REMARK 3 (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000104472. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-99% 13C; U-99% 15N] REMARK 210 P87M-HLYIIC, 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM EDTA, 1 MM AEBSF, REMARK 210 0.05% W/V SODIUM AZIDE, 90% H2O/ REMARK 210 10% D2O; 0.4 MM [U-99% 15N] P87M- REMARK 210 HLYIIC, 20 MM SODIUM PHOSPHATE, REMARK 210 1 MM EDTA, 1 MM AEBSF, 0.05% W/V REMARK 210 SODIUM AZIDE, 100% D2O; 0.4 MM REMARK 210 [U-99% 15N] P87M-HLYIIC, 20 MM REMARK 210 SODIUM PHOSPHATE, 1 MM EDTA, 1 REMARK 210 MM AEBSF, 0.05% W/V SODIUM AZIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D HNCO; 3D HN(CA)CO; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D DQF-COSY; 2D REMARK 210 1H-1H NOESY; 3D CCH-TOCSY; 3D REMARK 210 HNHA; 3D HNHB; 3D 1H-15N TOCSY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANALYSIS 2.1, FELIX-NMR, TALOS REMARK 210 TALOS-N REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA B 5 -169.57 -74.60 REMARK 500 1 LEU B 6 22.22 -79.37 REMARK 500 1 LYS B 22 -77.40 -131.38 REMARK 500 1 LYS B 24 -140.74 -117.19 REMARK 500 1 ALA B 43 22.28 -74.70 REMARK 500 1 TYR B 45 -152.51 46.98 REMARK 500 1 GLU B 50 -83.92 -65.76 REMARK 500 1 VAL B 63 -3.22 -154.02 REMARK 500 1 THR B 71 115.52 60.28 REMARK 500 1 LYS B 85 -159.71 -129.68 REMARK 500 1 MET B 87 -52.11 -176.72 REMARK 500 2 LYS B 22 -84.27 -129.36 REMARK 500 2 LYS B 24 -159.05 -126.24 REMARK 500 2 TYR B 45 -142.02 38.13 REMARK 500 2 ILE B 47 -57.41 -121.21 REMARK 500 2 GLU B 50 -84.17 -94.98 REMARK 500 2 VAL B 63 -16.74 -151.47 REMARK 500 2 THR B 71 107.78 59.18 REMARK 500 2 MET B 87 -81.21 -146.10 REMARK 500 3 GLN B 3 -70.09 -90.64 REMARK 500 3 LYS B 4 -61.93 -97.10 REMARK 500 3 GLN B 9 -163.59 -128.87 REMARK 500 3 LYS B 22 -74.38 -116.72 REMARK 500 3 LYS B 24 -145.48 -110.70 REMARK 500 3 ALA B 43 23.22 -70.21 REMARK 500 3 TYR B 45 -156.98 45.20 REMARK 500 3 ILE B 47 -70.85 -91.68 REMARK 500 3 ASP B 51 113.09 -173.05 REMARK 500 3 VAL B 63 -14.96 -153.53 REMARK 500 3 THR B 71 102.01 55.21 REMARK 500 3 MET B 87 -74.99 -157.79 REMARK 500 4 LYS B 24 -135.10 41.65 REMARK 500 4 ALA B 43 22.40 -74.03 REMARK 500 4 TYR B 45 -159.48 45.56 REMARK 500 4 ILE B 47 -60.81 -122.11 REMARK 500 4 ASP B 51 110.77 -165.32 REMARK 500 4 VAL B 63 -11.41 -153.23 REMARK 500 4 THR B 71 100.58 53.64 REMARK 500 4 MET B 87 -68.89 -152.42 REMARK 500 5 ASN B 21 70.93 -105.62 REMARK 500 5 LYS B 22 -91.41 -138.31 REMARK 500 5 LYS B 24 -163.08 -124.27 REMARK 500 5 ASN B 34 21.61 -142.10 REMARK 500 5 TYR B 45 -164.55 52.93 REMARK 500 5 ILE B 47 -67.81 -108.53 REMARK 500 5 ASN B 59 -7.93 71.04 REMARK 500 5 VAL B 63 -10.08 -155.82 REMARK 500 5 THR B 71 99.84 66.27 REMARK 500 5 MET B 87 -75.20 -154.06 REMARK 500 6 LEU B 6 21.03 -79.77 REMARK 500 REMARK 500 THIS ENTRY HAS 269 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19461 RELATED DB: BMRB REMARK 900 HLYII-C MAJOR CIS FORM REMARK 900 RELATED ID: 19462 RELATED DB: BMRB REMARK 900 HLYII-C MINOR TRANS FORM REMARK 900 RELATED ID: 19463 RELATED DB: BMRB DBREF 2N67 B 1 94 UNP Q81AN8 Q81AN8_BACCR 319 412 SEQADV 2N67 MET B 87 UNP Q81AN8 PRO 405 ENGINEERED MUTATION SEQRES 1 B 94 ASP ASN GLN LYS ALA LEU GLU GLU GLN MET ASN SER ILE SEQRES 2 B 94 ASN SER VAL ASN ASP LYS LEU ASN LYS GLY LYS GLY LYS SEQRES 3 B 94 LEU SER LEU SER MET ASN GLY ASN GLN LEU LYS ALA THR SEQRES 4 B 94 SER SER ASN ALA GLY TYR GLY ILE SER TYR GLU ASP LYS SEQRES 5 B 94 ASN TRP GLY ILE PHE VAL ASN GLY GLU LYS VAL TYR THR SEQRES 6 B 94 PHE ASN GLU LYS SER THR VAL GLY ASN ILE SER ASN ASP SEQRES 7 B 94 ILE ASN LYS LEU ASN ILE LYS GLY MET TYR ILE GLU ILE SEQRES 8 B 94 LYS GLN ILE HELIX 1 1 MET B 10 ASN B 21 1 12 HELIX 2 2 THR B 71 ASN B 80 1 10 SHEET 1 A 2 LEU B 27 ASN B 32 0 SHEET 2 A 2 GLN B 35 SER B 40 -1 O LYS B 37 N SER B 30 SHEET 1 B 3 GLU B 61 ASN B 67 0 SHEET 2 B 3 ASN B 53 VAL B 58 -1 N VAL B 58 O GLU B 61 SHEET 3 B 3 GLU B 90 GLN B 93 -1 O LYS B 92 N GLY B 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1