HEADER VIRAL PROTEIN 03-SEP-15 2N74 TITLE SOLUTION STRUCTURE OF THE RNA-BINDING DOMAIN OF NON-STRUCTURAL PROTEIN TITLE 2 1 FROM THE 1918 H1N1 INFLUENZA VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RNA BINDING DOMAIN (UNP RESIDUES 1-73); COMPND 5 SYNONYM: NS1, NS1A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 88776; SOURCE 4 STRAIN: A/BREVIG MISSION/1/1918 H1N1; SOURCE 5 GENE: NS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-SUMO KEYWDS NS1, RIG-I, VIRULENCE, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 16 AUTHOR A.S.JUREKA,A.B.KLEINPETER,G.CORNILESCU,C.C.CORNILESCU,C.D.SCHWIETERS, AUTHOR 2 C.M.PETIT REVDAT 3 14-JUN-23 2N74 1 REMARK REVDAT 2 18-NOV-15 2N74 1 JRNL REVDAT 1 30-SEP-15 2N74 0 JRNL AUTH A.S.JUREKA,A.B.KLEINPETER,G.CORNILESCU,C.C.CORNILESCU, JRNL AUTH 2 C.M.PETIT JRNL TITL STRUCTURAL BASIS FOR A NOVEL INTERACTION BETWEEN THE NS1 JRNL TITL 2 PROTEIN DERIVED FROM THE 1918 INFLUENZA VIRUS AND RIG-I. JRNL REF STRUCTURE V. 23 2001 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26365801 JRNL DOI 10.1016/J.STR.2015.08.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000104505. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-13C; U-15N] INFLUENZA REMARK 210 NS1 RNA BINDING DOMAIN, 300 MM REMARK 210 AMMONIUM ACETATE, 2.2 MM EDTA, REMARK 210 0.1 % SODIUM AZIDE, 95% H2O/5% REMARK 210 D2O; 1 MM [U-15N] INFLUENZA NS1 REMARK 210 RNA BINDING DOMAIN, 300 MM REMARK 210 AMMONIUM ACETATE, 2.0 MM EDTA, REMARK 210 0.1 % SODIUM AZIDE, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HNCO; 3D CBCA(CO)NH; 3D HNHA; 3D REMARK 210 HCCH-COSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 ALA A 30 C PRO A 31 N 0.117 REMARK 500 1 ALA B 130 C PRO B 131 N 0.119 REMARK 500 2 ALA A 30 C PRO A 31 N 0.120 REMARK 500 2 ALA B 130 C PRO B 131 N 0.121 REMARK 500 3 ALA A 30 C PRO A 31 N 0.120 REMARK 500 3 ALA B 130 C PRO B 131 N 0.120 REMARK 500 4 ALA A 30 C PRO A 31 N 0.115 REMARK 500 4 ALA B 130 C PRO B 131 N 0.114 REMARK 500 6 ALA A 30 C PRO A 31 N 0.125 REMARK 500 6 ALA B 130 C PRO B 131 N 0.125 REMARK 500 8 ALA A 30 C PRO A 31 N 0.124 REMARK 500 8 ALA B 130 C PRO B 131 N 0.125 REMARK 500 9 ALA A 30 C PRO A 31 N 0.125 REMARK 500 9 ALA B 130 C PRO B 131 N 0.126 REMARK 500 10 ALA A 30 C PRO A 31 N 0.121 REMARK 500 10 ALA B 130 C PRO B 131 N 0.122 REMARK 500 12 ALA A 30 C PRO A 31 N 0.123 REMARK 500 12 ALA B 130 C PRO B 131 N 0.123 REMARK 500 13 ALA A 30 C PRO A 31 N 0.126 REMARK 500 13 ALA B 130 C PRO B 131 N 0.125 REMARK 500 14 ALA A 30 C PRO A 31 N 0.120 REMARK 500 14 ALA B 130 C PRO B 131 N 0.119 REMARK 500 15 ALA A 30 C PRO A 31 N 0.122 REMARK 500 15 ALA B 130 C PRO B 131 N 0.123 REMARK 500 16 ALA A 30 C PRO A 31 N 0.122 REMARK 500 16 ALA B 130 C PRO B 131 N 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 66 -70.75 -54.71 REMARK 500 1 GLU B 166 -78.86 -53.39 REMARK 500 1 GLU B 172 -31.43 -35.41 REMARK 500 2 SER A 3 -57.43 16.52 REMARK 500 2 GLU A 66 -71.99 -57.24 REMARK 500 2 SER B 103 -57.09 16.54 REMARK 500 2 THR B 149 -70.28 -53.91 REMARK 500 2 GLU B 166 -81.92 -53.89 REMARK 500 2 GLU B 171 -70.47 -88.33 REMARK 500 4 GLU A 26 15.89 82.58 REMARK 500 4 GLU A 66 -71.03 -56.33 REMARK 500 4 GLU B 126 11.21 87.79 REMARK 500 4 THR B 149 -70.54 -54.69 REMARK 500 4 GLU B 166 -79.03 -54.35 REMARK 500 5 GLU A 66 -72.71 -56.40 REMARK 500 5 GLU B 166 -82.88 -53.44 REMARK 500 6 ASP A 2 107.78 67.66 REMARK 500 6 ASP A 29 -151.33 -111.52 REMARK 500 6 GLU A 66 -70.52 -55.30 REMARK 500 6 ASP B 102 107.52 67.60 REMARK 500 6 ASP B 129 -151.31 -111.54 REMARK 500 6 THR B 149 -70.11 -53.10 REMARK 500 6 GLU B 166 -78.02 -53.01 REMARK 500 7 GLU A 66 -74.38 -59.50 REMARK 500 7 GLU B 166 -86.21 -56.32 REMARK 500 7 GLU B 171 -68.93 -91.69 REMARK 500 8 GLU A 66 -73.32 -57.44 REMARK 500 8 GLU B 166 -82.57 -54.97 REMARK 500 8 GLU B 171 -66.87 -95.76 REMARK 500 9 ASP A 2 -80.15 -120.05 REMARK 500 9 GLU A 72 87.00 64.47 REMARK 500 9 ASP B 102 -80.69 -120.15 REMARK 500 9 GLU B 172 88.78 73.82 REMARK 500 10 GLU A 66 -74.30 -56.01 REMARK 500 10 GLU A 72 -3.74 -148.73 REMARK 500 10 GLU B 166 -84.77 -53.34 REMARK 500 10 GLU B 171 -75.91 -81.67 REMARK 500 11 ASP A 29 -153.39 -119.00 REMARK 500 11 GLU A 66 -70.95 -56.72 REMARK 500 11 ASP B 129 -153.71 -119.15 REMARK 500 11 THR B 149 -71.08 -54.50 REMARK 500 11 GLU B 166 -79.00 -54.33 REMARK 500 13 GLU A 66 -72.63 -55.26 REMARK 500 13 GLU A 72 22.64 48.58 REMARK 500 13 GLU B 166 -80.22 -52.97 REMARK 500 14 VAL A 65 -61.19 -91.81 REMARK 500 14 GLU A 66 -71.78 -54.04 REMARK 500 14 GLU B 166 -79.33 -52.10 REMARK 500 15 SER A 3 -60.44 73.96 REMARK 500 15 GLU A 66 -71.93 -56.59 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25793 RELATED DB: BMRB DBREF 2N74 A 1 73 UNP Q99AU3 NS1_I18A0 1 73 DBREF 2N74 B 101 173 UNP Q99AU3 NS1_I18A0 1 73 SEQRES 1 A 73 MET ASP SER ASN THR VAL SER SER PHE GLN VAL ASP CYS SEQRES 2 A 73 PHE LEU TRP HIS VAL ARG LYS ARG PHE ALA ASP GLN GLU SEQRES 3 A 73 LEU GLY ASP ALA PRO PHE LEU ASP ARG LEU ARG ARG ASP SEQRES 4 A 73 GLN LYS SER LEU ARG GLY ARG GLY SER THR LEU GLY LEU SEQRES 5 A 73 ASP ILE GLU THR ALA THR ARG ALA GLY LYS GLN ILE VAL SEQRES 6 A 73 GLU ARG ILE LEU LYS GLU GLU SER SEQRES 1 B 73 MET ASP SER ASN THR VAL SER SER PHE GLN VAL ASP CYS SEQRES 2 B 73 PHE LEU TRP HIS VAL ARG LYS ARG PHE ALA ASP GLN GLU SEQRES 3 B 73 LEU GLY ASP ALA PRO PHE LEU ASP ARG LEU ARG ARG ASP SEQRES 4 B 73 GLN LYS SER LEU ARG GLY ARG GLY SER THR LEU GLY LEU SEQRES 5 B 73 ASP ILE GLU THR ALA THR ARG ALA GLY LYS GLN ILE VAL SEQRES 6 B 73 GLU ARG ILE LEU LYS GLU GLU SER HELIX 1 1 SER A 3 ASP A 24 1 22 HELIX 2 2 ALA A 30 GLY A 51 1 22 HELIX 3 3 ASP A 53 GLU A 72 1 20 HELIX 4 4 SER B 103 ASP B 124 1 22 HELIX 5 5 ALA B 130 GLY B 151 1 22 HELIX 6 6 ASP B 153 GLU B 172 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1