HEADER TRANSLATION 04-SEP-15 2N78 TITLE NMR STRUCTURE OF IF1 FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR IF-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: INFA, ERS445055_02430, PA257_2936, PA8380_26730, PAMH19_6240, SOURCE 5 YQ19_15045; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS TRANSLATION EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR Y.ZHANG REVDAT 4 15-MAY-24 2N78 1 REMARK REVDAT 3 14-JUN-23 2N78 1 REMARK REVDAT 2 12-OCT-16 2N78 1 JRNL REVDAT 1 07-SEP-16 2N78 0 JRNL AUTH A.BERNAL,Y.HU,S.O.PALMER,A.SILVA,J.BULLARD,Y.ZHANG JRNL TITL (1)H, (13)C AND (15)N RESONANCE ASSIGNMENTS AND SECONDARY JRNL TITL 2 STRUCTURE ANALYSIS OF TRANSLATION INITIATION FACTOR 1 FROM JRNL TITL 3 PSEUDOMONAS AERUGINOSA. JRNL REF BIOMOL.NMR ASSIGN. V. 10 249 2016 JRNL REFN ISSN 1874-2718 JRNL PMID 26983940 JRNL DOI 10.1007/S12104-016-9678-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N78 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000104509. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.1 REMARK 210 IONIC STRENGTH : 0.125 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 POTASSIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D 1H-15N REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 9 H VAL A 55 1.55 REMARK 500 H VAL A 24 O VAL A 32 1.57 REMARK 500 O VAL A 13 H GLY A 50 1.58 REMARK 500 O LEU A 26 H HIS A 30 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 HIS A 30 CG HIS A 30 ND1 -0.123 REMARK 500 1 HIS A 35 CG HIS A 35 ND1 -0.119 REMARK 500 2 HIS A 30 CG HIS A 30 ND1 -0.120 REMARK 500 2 HIS A 35 CG HIS A 35 ND1 -0.121 REMARK 500 3 HIS A 30 CG HIS A 30 ND1 -0.123 REMARK 500 3 HIS A 35 CG HIS A 35 ND1 -0.120 REMARK 500 4 HIS A 30 CG HIS A 30 ND1 -0.120 REMARK 500 4 HIS A 35 CG HIS A 35 ND1 -0.123 REMARK 500 5 HIS A 30 CG HIS A 30 ND1 -0.121 REMARK 500 5 HIS A 35 CG HIS A 35 ND1 -0.120 REMARK 500 6 HIS A 30 CG HIS A 30 ND1 -0.121 REMARK 500 6 HIS A 35 CG HIS A 35 ND1 -0.120 REMARK 500 7 HIS A 30 CG HIS A 30 ND1 -0.121 REMARK 500 7 HIS A 35 CG HIS A 35 ND1 -0.122 REMARK 500 8 HIS A 30 CG HIS A 30 ND1 -0.121 REMARK 500 8 HIS A 35 CG HIS A 35 ND1 -0.120 REMARK 500 9 HIS A 30 CG HIS A 30 ND1 -0.119 REMARK 500 9 HIS A 35 CG HIS A 35 ND1 -0.120 REMARK 500 10 HIS A 30 CG HIS A 30 ND1 -0.120 REMARK 500 10 HIS A 35 CG HIS A 35 ND1 -0.121 REMARK 500 11 HIS A 30 CG HIS A 30 ND1 -0.117 REMARK 500 11 HIS A 35 CG HIS A 35 ND1 -0.120 REMARK 500 12 HIS A 30 CG HIS A 30 ND1 -0.120 REMARK 500 12 HIS A 35 CG HIS A 35 ND1 -0.120 REMARK 500 13 HIS A 30 CG HIS A 30 ND1 -0.121 REMARK 500 13 HIS A 35 CG HIS A 35 ND1 -0.120 REMARK 500 14 HIS A 30 CG HIS A 30 ND1 -0.123 REMARK 500 14 HIS A 35 CG HIS A 35 ND1 -0.122 REMARK 500 15 HIS A 30 CG HIS A 30 ND1 -0.120 REMARK 500 15 HIS A 35 CG HIS A 35 ND1 -0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 15.02 -163.98 REMARK 500 1 ASP A 5 -145.28 -132.87 REMARK 500 1 ASP A 15 149.36 171.06 REMARK 500 1 THR A 20 60.95 72.62 REMARK 500 1 GLU A 27 -6.20 -36.91 REMARK 500 1 ASN A 28 25.77 -71.02 REMARK 500 1 LEU A 48 174.39 -56.31 REMARK 500 1 ASP A 61 87.26 165.42 REMARK 500 1 SER A 63 -2.45 -57.19 REMARK 500 1 THR A 68 86.10 -160.27 REMARK 500 1 TYR A 69 124.07 119.14 REMARK 500 2 SER A 2 -164.57 -71.56 REMARK 500 2 GLU A 4 130.31 -173.43 REMARK 500 2 ASP A 15 142.86 169.23 REMARK 500 2 ASN A 19 32.98 77.34 REMARK 500 2 GLU A 27 -5.21 -36.17 REMARK 500 2 ASN A 28 25.70 -71.18 REMARK 500 2 ASP A 61 81.40 -170.95 REMARK 500 2 SER A 63 -4.55 -56.00 REMARK 500 2 THR A 68 87.20 -162.16 REMARK 500 2 TYR A 69 116.87 116.23 REMARK 500 3 GLU A 4 87.25 53.31 REMARK 500 3 VAL A 14 84.98 -151.80 REMARK 500 3 ASP A 15 136.63 172.14 REMARK 500 3 THR A 20 62.93 65.56 REMARK 500 3 GLU A 27 -4.66 -37.19 REMARK 500 3 ASN A 28 25.64 -70.97 REMARK 500 3 TYR A 44 139.93 -170.67 REMARK 500 3 ILE A 45 168.90 -49.57 REMARK 500 3 ASP A 61 81.99 171.86 REMARK 500 3 SER A 63 -3.28 -56.59 REMARK 500 3 THR A 68 87.15 -162.89 REMARK 500 3 TYR A 69 123.17 119.70 REMARK 500 4 SER A 2 -165.76 61.55 REMARK 500 4 GLU A 4 -118.49 -144.24 REMARK 500 4 ASP A 5 57.15 -153.33 REMARK 500 4 ASP A 15 138.87 173.20 REMARK 500 4 ASN A 19 23.15 80.46 REMARK 500 4 THR A 20 61.08 75.51 REMARK 500 4 GLU A 27 -3.52 -36.88 REMARK 500 4 ASN A 28 25.32 -70.74 REMARK 500 4 ASP A 61 87.28 -168.74 REMARK 500 4 SER A 63 -2.22 -56.59 REMARK 500 4 THR A 68 87.80 -162.70 REMARK 500 4 TYR A 69 124.80 111.28 REMARK 500 5 SER A 2 87.61 52.17 REMARK 500 5 LYS A 3 -96.23 -67.09 REMARK 500 5 GLU A 4 -89.75 -120.27 REMARK 500 5 SER A 6 -175.06 -65.54 REMARK 500 5 ASP A 15 139.39 173.03 REMARK 500 REMARK 500 THIS ENTRY HAS 196 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 23 0.26 SIDE CHAIN REMARK 500 1 ARG A 41 0.32 SIDE CHAIN REMARK 500 1 ARG A 46 0.14 SIDE CHAIN REMARK 500 1 ARG A 66 0.16 SIDE CHAIN REMARK 500 1 ARG A 70 0.32 SIDE CHAIN REMARK 500 1 ARG A 72 0.29 SIDE CHAIN REMARK 500 2 ARG A 23 0.24 SIDE CHAIN REMARK 500 2 ARG A 41 0.26 SIDE CHAIN REMARK 500 2 ARG A 46 0.32 SIDE CHAIN REMARK 500 2 ARG A 54 0.30 SIDE CHAIN REMARK 500 2 ARG A 66 0.25 SIDE CHAIN REMARK 500 2 ARG A 70 0.30 SIDE CHAIN REMARK 500 3 ARG A 23 0.31 SIDE CHAIN REMARK 500 3 ARG A 41 0.24 SIDE CHAIN REMARK 500 3 ARG A 46 0.28 SIDE CHAIN REMARK 500 3 ARG A 54 0.32 SIDE CHAIN REMARK 500 3 ARG A 66 0.31 SIDE CHAIN REMARK 500 3 ARG A 70 0.29 SIDE CHAIN REMARK 500 3 ARG A 72 0.30 SIDE CHAIN REMARK 500 4 ARG A 23 0.27 SIDE CHAIN REMARK 500 4 ARG A 41 0.30 SIDE CHAIN REMARK 500 4 ARG A 54 0.10 SIDE CHAIN REMARK 500 4 ARG A 66 0.16 SIDE CHAIN REMARK 500 4 ARG A 70 0.26 SIDE CHAIN REMARK 500 4 ARG A 72 0.24 SIDE CHAIN REMARK 500 5 ARG A 23 0.30 SIDE CHAIN REMARK 500 5 ARG A 41 0.22 SIDE CHAIN REMARK 500 5 ARG A 46 0.21 SIDE CHAIN REMARK 500 5 ARG A 54 0.30 SIDE CHAIN REMARK 500 5 ARG A 66 0.23 SIDE CHAIN REMARK 500 5 ARG A 70 0.30 SIDE CHAIN REMARK 500 5 ARG A 72 0.31 SIDE CHAIN REMARK 500 6 ARG A 23 0.15 SIDE CHAIN REMARK 500 6 ARG A 41 0.31 SIDE CHAIN REMARK 500 6 ARG A 46 0.27 SIDE CHAIN REMARK 500 6 ARG A 54 0.32 SIDE CHAIN REMARK 500 6 ARG A 66 0.32 SIDE CHAIN REMARK 500 6 ARG A 70 0.31 SIDE CHAIN REMARK 500 6 ARG A 72 0.32 SIDE CHAIN REMARK 500 7 ARG A 23 0.32 SIDE CHAIN REMARK 500 7 ARG A 41 0.32 SIDE CHAIN REMARK 500 7 ARG A 46 0.29 SIDE CHAIN REMARK 500 7 ARG A 54 0.32 SIDE CHAIN REMARK 500 7 ARG A 70 0.30 SIDE CHAIN REMARK 500 7 ARG A 72 0.32 SIDE CHAIN REMARK 500 8 ARG A 23 0.31 SIDE CHAIN REMARK 500 8 ARG A 41 0.28 SIDE CHAIN REMARK 500 8 ARG A 46 0.30 SIDE CHAIN REMARK 500 8 ARG A 54 0.28 SIDE CHAIN REMARK 500 8 ARG A 66 0.25 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 96 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26649 RELATED DB: BMRB DBREF1 2N78 A 1 72 UNP A0A072ZPH3_PSEAI DBREF2 2N78 A A0A072ZPH3 1 72 SEQRES 1 A 72 MET SER LYS GLU ASP SER PHE GLU MET GLU GLY THR VAL SEQRES 2 A 72 VAL ASP THR LEU PRO ASN THR MET PHE ARG VAL GLU LEU SEQRES 3 A 72 GLU ASN GLY HIS VAL VAL THR ALA HIS ILE SER GLY LYS SEQRES 4 A 72 MET ARG LYS ASN TYR ILE ARG ILE LEU THR GLY ASP LYS SEQRES 5 A 72 VAL ARG VAL GLU LEU THR PRO TYR ASP LEU SER LYS GLY SEQRES 6 A 72 ARG ILE THR TYR ARG ALA ARG HELIX 1 1 SER A 37 TYR A 44 1 8 SHEET 1 A 6 PHE A 7 VAL A 13 0 SHEET 2 A 6 PHE A 22 LEU A 26 -1 O GLU A 25 N THR A 12 SHEET 3 A 6 HIS A 30 ALA A 34 -1 O HIS A 30 N LEU A 26 SHEET 4 A 6 ASP A 61 ALA A 71 1 O GLY A 65 N THR A 33 SHEET 5 A 6 LYS A 52 THR A 58 -1 N LYS A 52 O ALA A 71 SHEET 6 A 6 PHE A 7 VAL A 13 -1 N MET A 9 O VAL A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1