HEADER MEMBRANE PROTEIN 17-SEP-15 2N7Q TITLE STRUCTURE OF THE TRANSMEMBRANE DOMAIN OF HUMAN NICASTRIN IN SDS TITLE 2 MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICASTRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 664-709; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET29B KEYWDS DETERGENT MICELLES, GAMMA-SECRETASE, NICASTRIN, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.LI,L.LIEW,Q.LI,C.KANG REVDAT 2 01-MAY-24 2N7Q 1 REMARK SEQADV REVDAT 1 27-APR-16 2N7Q 0 JRNL AUTH Y.LI,L.S.LIEW,Q.LI,C.KANG JRNL TITL STRUCTURE OF THE TRANSMEMBRANE DOMAIN OF HUMAN NICASTRIN-A JRNL TITL 2 COMPONENT OF GAMMA-SECRETASE JRNL REF SCI REP V. 6 19522 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26776682 JRNL DOI 10.1038/SREP19522 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, XPLOR-NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATION ANNEALING WAS CONDUCTED. THE REMARK 3 STRUCTURES WERE THEN ENERGY MINIMIZED. REMARK 4 REMARK 4 2N7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000104527. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 TRANSMEMBRANE DOMAIN OF HUMAN REMARK 210 NICASTRIN-1, 20 MM SODIUM REMARK 210 PHOSPHATE-2, 100 MM SDS-3, 1 MM REMARK 210 DTT-4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCACB; 3D HN(COCA)CB; 3D HNCO; REMARK 210 3D 1H-15N NOESY; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 36 70.89 1.51 REMARK 500 1 ALA A 43 23.45 48.84 REMARK 500 2 SER A 2 -0.24 75.47 REMARK 500 2 ILE A 36 29.53 36.22 REMARK 500 2 ALA A 37 160.63 -46.05 REMARK 500 2 PRO A 41 139.90 -38.88 REMARK 500 2 VAL A 44 154.11 58.80 REMARK 500 2 SER A 45 160.29 60.10 REMARK 500 3 ILE A 36 70.51 -0.21 REMARK 500 3 ALA A 37 160.23 -40.15 REMARK 500 3 PRO A 41 29.20 -71.85 REMARK 500 3 VAL A 44 100.07 -52.44 REMARK 500 4 ILE A 36 64.17 35.03 REMARK 500 4 ALA A 37 162.14 -42.77 REMARK 500 4 PRO A 41 90.45 -64.73 REMARK 500 5 ILE A 36 28.30 35.71 REMARK 500 5 ALA A 37 160.61 -46.65 REMARK 500 5 PRO A 41 14.37 -66.76 REMARK 500 5 VAL A 44 -129.93 40.48 REMARK 500 6 ILE A 36 66.19 2.70 REMARK 500 6 PRO A 38 171.14 -53.42 REMARK 500 6 GLU A 40 156.83 -44.69 REMARK 500 6 PRO A 41 -83.87 -63.10 REMARK 500 6 SER A 45 57.80 -94.48 REMARK 500 7 SER A 2 -3.95 -58.01 REMARK 500 7 PHE A 35 -157.44 -133.96 REMARK 500 7 ALA A 37 162.73 -43.25 REMARK 500 7 PRO A 41 -16.72 -41.24 REMARK 500 8 ILE A 36 64.40 32.22 REMARK 500 8 ALA A 37 162.42 -42.40 REMARK 500 8 ALA A 43 -7.51 -59.26 REMARK 500 9 PHE A 35 -155.78 -133.97 REMARK 500 9 ALA A 37 159.98 -41.54 REMARK 500 9 PRO A 41 93.82 -68.60 REMARK 500 10 ILE A 36 72.34 -0.97 REMARK 500 10 ALA A 37 161.30 -46.46 REMARK 500 10 PRO A 41 99.91 -68.24 REMARK 500 10 ALA A 43 104.15 -41.20 REMARK 500 10 VAL A 44 -87.17 51.52 REMARK 500 10 SER A 45 177.94 65.95 REMARK 500 11 ILE A 36 61.13 32.91 REMARK 500 11 ALA A 37 161.89 -40.54 REMARK 500 11 ALA A 43 -89.50 47.89 REMARK 500 11 SER A 45 -45.51 -154.96 REMARK 500 12 ILE A 36 72.36 -0.70 REMARK 500 12 ALA A 37 163.00 -39.09 REMARK 500 12 PRO A 38 136.38 -39.73 REMARK 500 12 PRO A 41 94.94 -39.99 REMARK 500 12 ALA A 43 20.51 45.53 REMARK 500 13 ILE A 36 73.29 -1.39 REMARK 500 REMARK 500 THIS ENTRY HAS 89 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25818 RELATED DB: BMRB REMARK 900 RELATED ID: 2N7R RELATED DB: PDB REMARK 900 RELATED ID: 25817 RELATED DB: BMRB DBREF 2N7Q A 1 46 UNP Q92542 NICA_HUMAN 664 709 SEQADV 2N7Q MET A -7 UNP Q92542 EXPRESSION TAG SEQADV 2N7Q ALA A -6 UNP Q92542 EXPRESSION TAG SEQADV 2N7Q HIS A -5 UNP Q92542 EXPRESSION TAG SEQADV 2N7Q HIS A -4 UNP Q92542 EXPRESSION TAG SEQADV 2N7Q HIS A -3 UNP Q92542 EXPRESSION TAG SEQADV 2N7Q HIS A -2 UNP Q92542 EXPRESSION TAG SEQADV 2N7Q HIS A -1 UNP Q92542 EXPRESSION TAG SEQADV 2N7Q HIS A 0 UNP Q92542 EXPRESSION TAG SEQRES 1 A 54 MET ALA HIS HIS HIS HIS HIS HIS ALA SER LYS GLU LEU SEQRES 2 A 54 GLU LEU ILE THR LEU THR VAL GLY PHE GLY ILE LEU ILE SEQRES 3 A 54 PHE SER LEU ILE VAL THR TYR CYS ILE ASN ALA LYS ALA SEQRES 4 A 54 ASP VAL LEU PHE ILE ALA PRO ARG GLU PRO GLY ALA VAL SEQRES 5 A 54 SER TYR HELIX 1 1 ALA A 1 PHE A 35 1 35 HELIX 2 2 GLU A 40 VAL A 44 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1