HEADER PROTEIN BINDING, DE NOVO PROTEIN 10-OCT-15 2N8C TITLE CYSTEIN KNOT WITH 2FP INTEGRIN AVB6 CANCER RECOGNITION SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE KNOT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS CANCER, IMAGING, PROTEIN BINDING, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.V.FILIPP,R.KIMURA,S.TIKOLE REVDAT 4 30-OCT-24 2N8C 1 REMARK REVDAT 3 27-DEC-23 2N8C 1 REMARK LINK REVDAT 2 14-JUN-23 2N8C 1 REMARK LINK REVDAT 1 02-NOV-16 2N8C 0 JRNL AUTH F.V.FILIPP,R.KIMURA,S.TIKOLE JRNL TITL CYSTEIN KNOT WITH 2-FP LABEL AND INTEGRIN AVB6 CANCER JRNL TITL 2 RECOGNITION SITE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW 5.2.2, CYANA 3.0 REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), GUNTERT, REMARK 3 MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000104549. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM KNOT_2FP, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 90% H2O/10% D2O; 2 MM REMARK 210 KNOT_2FP, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 5.5 M [U-2H] D2O, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, NMRPIPE X, TOPSPIN REMARK 210 3.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 24 SG CYS A 36 0.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 4 141.59 64.96 REMARK 500 1 LEU A 5 -158.23 46.11 REMARK 500 1 ASN A 6 156.10 67.91 REMARK 500 1 ARG A 8 95.40 64.69 REMARK 500 1 ASP A 10 83.29 42.79 REMARK 500 1 LEU A 11 -85.24 -130.25 REMARK 500 1 ARG A 17 25.46 47.35 REMARK 500 1 CYS A 18 104.85 -10.60 REMARK 500 1 ARG A 20 152.51 163.58 REMARK 500 1 CYS A 24 75.86 -119.59 REMARK 500 1 TYR A 35 164.40 175.89 REMARK 500 2 ILE A 4 73.87 53.78 REMARK 500 2 LEU A 5 96.20 64.01 REMARK 500 2 ASN A 6 28.71 -176.34 REMARK 500 2 ARG A 8 102.57 62.65 REMARK 500 2 THR A 9 -172.55 -58.16 REMARK 500 2 ASP A 10 77.73 42.36 REMARK 500 2 LEU A 11 -77.37 -131.58 REMARK 500 2 ARG A 17 27.15 46.49 REMARK 500 2 CYS A 18 116.76 -15.05 REMARK 500 2 ARG A 20 157.86 165.14 REMARK 500 2 CYS A 28 164.61 -48.33 REMARK 500 2 TYR A 35 164.31 175.57 REMARK 500 2 CYS A 36 74.40 -69.93 REMARK 500 3 ILE A 4 74.80 49.56 REMARK 500 3 LEU A 5 149.97 67.81 REMARK 500 3 ASN A 6 98.64 66.22 REMARK 500 3 THR A 9 132.61 66.53 REMARK 500 3 ASP A 10 87.05 47.63 REMARK 500 3 LEU A 11 -80.42 -113.67 REMARK 500 3 ARG A 17 28.99 45.72 REMARK 500 3 CYS A 18 119.59 -17.80 REMARK 500 3 ARG A 20 151.40 166.14 REMARK 500 3 CYS A 28 158.88 -44.54 REMARK 500 3 TYR A 35 164.76 175.54 REMARK 500 4 ILE A 4 103.63 62.28 REMARK 500 4 LEU A 5 93.56 61.49 REMARK 500 4 ARG A 8 97.80 64.70 REMARK 500 4 ASP A 10 79.09 39.48 REMARK 500 4 LEU A 11 -76.01 -131.64 REMARK 500 4 ARG A 17 27.26 46.81 REMARK 500 4 CYS A 18 115.21 -15.42 REMARK 500 4 ARG A 20 148.46 161.84 REMARK 500 4 CYS A 28 153.31 -47.89 REMARK 500 4 TYR A 35 164.68 175.77 REMARK 500 4 CYS A 36 70.97 -68.98 REMARK 500 5 CYS A 3 38.52 -169.42 REMARK 500 5 ILE A 4 88.48 50.89 REMARK 500 5 LEU A 5 98.11 63.29 REMARK 500 5 ARG A 8 95.02 64.99 REMARK 500 REMARK 500 THIS ENTRY HAS 218 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HA9 RELATED DB: PDB REMARK 900 RELATED ID: 2N8B RELATED DB: PDB REMARK 900 RELATED ID: 25845 RELATED DB: BMRB DBREF 2N8C A 1 37 PDB 2N8C 2N8C 1 37 SEQRES 1 A 37 4LT GLY CYS ILE LEU ASN GLY ARG THR ASP LEU GLY THR SEQRES 2 A 37 LEU LEU PHE ARG CYS ARG ARG ASP SER ASP CYS PRO GLY SEQRES 3 A 37 ALA CYS ILE CYS ARG GLY ASN GLY TYR CYS GLY HET 4LT A 1 9 HETNAM 4LT (2R)-2-FLUOROPROPANOIC ACID FORMUL 1 4LT C3 H5 F O2 HELIX 1 1 GLY A 12 PHE A 16 5 5 HELIX 2 2 ARG A 20 CYS A 24 5 5 SHEET 1 A 2 ILE A 29 ARG A 31 0 SHEET 2 A 2 TYR A 35 GLY A 37 -1 O GLY A 37 N ILE A 29 SSBOND 1 CYS A 3 CYS A 28 1555 1555 1.96 SSBOND 2 CYS A 18 CYS A 30 1555 1555 2.27 SSBOND 3 CYS A 24 CYS A 28 1555 1555 2.97 LINK C 4LT A 1 N GLY A 2 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 C 4LT A 1 1.299 -1.232 -1.711 1.00 43.42 C HETATM 2 O 4LT A 1 2.058 -2.139 -1.373 1.00 61.13 O HETATM 3 CA 4LT A 1 1.271 0.000 -0.840 1.00 14.02 C HETATM 4 CB 4LT A 1 0.000 0.000 0.000 1.00 0.00 C HETATM 5 F 4LT A 1 2.381 0.000 0.000 1.00 1.00 F HETATM 6 HA 4LT A 1 1.291 0.910 -1.482 1.00 30.41 H HETATM 7 HB3 4LT A 1 -0.020 -0.909 0.642 1.00 2.22 H HETATM 8 HB2 4LT A 1 -0.888 0.000 -0.671 1.00 41.22 H HETATM 9 HB1 4LT A 1 -0.021 0.908 0.643 1.00 52.43 H