HEADER TRANSFERASE 29-OCT-15 2N90 TITLE TRKA TRANSMEMBRANE DOMAIN NMR STRUCTURE IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NEUROTROPHIC TYROSINE KINASE RECEPTOR TYPE 1, TRK1- COMPND 5 TRANSFORMING TYROSINE KINASE PROTEIN, TROPOMYOSIN-RELATED KINASE A, COMPND 6 TYROSINE KINASE RECEPTOR, TYROSINE KINASE RECEPTOR A, TRK-A, COMPND 7 GP140TRK, P140-TRKA; COMPND 8 EC: 2.7.10.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NTRK1, MTC, TRK, TRKA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEMEX-1 KEYWDS NEUROTROPHIN RECEPTOR, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.NADEZHDIN,S.GONCHARUK,A.ARSENIEV REVDAT 3 14-JUN-23 2N90 1 REMARK REVDAT 2 10-FEB-21 2N90 1 JRNL REMARK SEQADV REVDAT 1 09-NOV-16 2N90 0 JRNL AUTH M.L.FRANCO,K.D.NADEZHDIN,S.A.GONCHARUK,K.S.MINEEV, JRNL AUTH 2 A.S.ARSENIEV,M.VILAR JRNL TITL STRUCTURAL BASIS OF THE TRANSMEMBRANE DOMAIN DIMERIZATION JRNL TITL 2 AND ROTATION IN THE ACTIVATION MECHANISM OF THE TRKA JRNL TITL 3 RECEPTOR BY NERVE GROWTH FACTOR. JRNL REF J.BIOL.CHEM. V. 295 275 2020 JRNL REFN ESSN 1083-351X JRNL PMID 31801826 JRNL DOI 10.1074/JBC.RA119.011312 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N90 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000104573. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 5.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 1 MM PROTEIN, 40 MM [U- REMARK 210 100% 2H] DPC, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HNHA; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HN(CO)CA REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CYANA, MOLMOL, CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 4 -177.65 -68.79 REMARK 500 1 GLU A 5 76.24 -167.36 REMARK 500 1 GLU B 105 73.68 -171.03 REMARK 500 2 GLU A 5 -70.95 -58.35 REMARK 500 2 ALA A 34 102.30 -161.06 REMARK 500 2 ALA B 134 101.26 -162.94 REMARK 500 3 PHE A 8 114.30 -178.25 REMARK 500 3 PHE B 108 114.15 -179.07 REMARK 500 5 GLU A 5 74.30 -172.93 REMARK 500 5 ALA A 34 104.77 -164.87 REMARK 500 5 GLU B 105 72.20 -174.37 REMARK 500 5 ALA B 134 106.35 -174.74 REMARK 500 6 GLU A 5 79.23 -167.56 REMARK 500 6 GLU B 105 76.80 -168.78 REMARK 500 7 GLU A 5 83.71 -170.89 REMARK 500 7 GLU B 105 81.94 -171.91 REMARK 500 8 ALA B 134 94.72 -161.15 REMARK 500 9 GLU A 5 90.54 -166.06 REMARK 500 9 GLU B 105 89.01 -168.72 REMARK 500 10 GLU A 5 84.58 -172.16 REMARK 500 10 GLU B 105 79.95 -173.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25872 RELATED DB: BMRB DBREF 2N90 A 2 39 UNP P04629 NTRK1_HUMAN 410 447 DBREF 2N90 B 102 139 UNP P04629 NTRK1_HUMAN 410 447 SEQADV 2N90 MET A 1 UNP P04629 EXPRESSION TAG SEQADV 2N90 ALA A 34 UNP P04629 CYS 442 CONFLICT SEQADV 2N90 MET B 101 UNP P04629 EXPRESSION TAG SEQADV 2N90 ALA B 134 UNP P04629 CYS 442 CONFLICT SEQRES 1 A 39 MET LYS LYS ASP GLU THR PRO PHE GLY VAL SER VAL ALA SEQRES 2 A 39 VAL GLY LEU ALA VAL PHE ALA CYS LEU PHE LEU SER THR SEQRES 3 A 39 LEU LEU LEU VAL LEU ASN LYS ALA GLY ARG ARG ASN LYS SEQRES 1 B 39 MET LYS LYS ASP GLU THR PRO PHE GLY VAL SER VAL ALA SEQRES 2 B 39 VAL GLY LEU ALA VAL PHE ALA CYS LEU PHE LEU SER THR SEQRES 3 B 39 LEU LEU LEU VAL LEU ASN LYS ALA GLY ARG ARG ASN LYS HELIX 1 1 GLY A 9 ALA A 34 1 26 HELIX 2 2 GLY B 109 ALA B 134 1 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1