HEADER NEUROPEPTIDE 11-NOV-15 2N99 TITLE SOLUTION STRUCTURE OF THE SLURP-2, A SECRETED ISOFORM OF LYNX1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LY-6/NEUROTOXIN-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 57-131; COMPND 5 SYNONYM: SECRETED LY-6/UPAR DOMAIN-CONTAINING PROTEIN 2, SECRETED LY- COMPND 6 6/UPAR-RELATED PROTEIN 2, SLURP-2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LYNX1, SLURP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-22B(+) KEYWDS NEUROMODULATOR, CELL PROLIFERATION, THREE-FINGER PROTEIN, NICOTINIC KEYWDS 2 ACETYLCHOLINE RECEPTOR, MUSCARINIC ACETYLCHOLINE RECEPTOR, KEYWDS 3 EPITHELIUM, KERATINOCYTE, NEUROPEPTIDE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.S.PARAMONOV,Z.O.SHENKAREV,E.N.LYUKMANOVA,A.S.ARSENIEV REVDAT 2 14-JUN-23 2N99 1 REMARK SEQADV REVDAT 1 21-SEP-16 2N99 0 JRNL AUTH E.N.LYUKMANOVA,M.A.SHULEPKO,Z.O.SHENKAREV,M.L.BYCHKOV, JRNL AUTH 2 A.S.PARAMONOV,A.O.CHUGUNOV,D.S.KULBATSKII,M.ARVANITI, JRNL AUTH 3 E.DOLEJSI,T.SCHAER,A.S.ARSENIEV,R.G.EFREMOV,M.S.THOMSEN, JRNL AUTH 4 V.DOLEZAL,D.BERTRAND,D.A.DOLGIKH,M.P.KIRPICHNIKOV JRNL TITL SECRETED ISOFORM OF HUMAN LYNX1 (SLURP-2): SPATIAL STRUCTURE JRNL TITL 2 AND PHARMACOLOGY OF INTERACTIONS WITH DIFFERENT TYPES OF JRNL TITL 3 ACETYLCHOLINE RECEPTORS. JRNL REF SCI REP V. 6 30698 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27485575 JRNL DOI 10.1038/SREP30698 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CYANA REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000104582. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 315 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 SLURP, 95% H2O/5% D2O/5% DIOXANE- REMARK 210 D6 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HCCH-TOCSY; 3D HNHA; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-15N TOCSY; REMARK 210 3D HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 112 176.74 -55.09 REMARK 500 1 HIS A 114 92.18 -174.90 REMARK 500 1 MET A 145 -167.66 -163.12 REMARK 500 1 ILE A 148 43.42 -90.65 REMARK 500 1 CYS A 150 75.98 -164.76 REMARK 500 1 PRO A 151 -169.93 -69.73 REMARK 500 1 PRO A 160 -163.44 -69.81 REMARK 500 1 GLN A 168 49.35 -92.26 REMARK 500 1 HIS A 174 -177.68 -63.56 REMARK 500 2 CYS A 112 178.11 -55.44 REMARK 500 2 HIS A 114 87.69 -176.02 REMARK 500 2 ASP A 138 -63.83 -95.25 REMARK 500 2 ILE A 148 45.10 -90.74 REMARK 500 2 CYS A 150 73.42 -163.49 REMARK 500 2 GLN A 168 48.78 -92.05 REMARK 500 3 HIS A 114 99.38 -174.48 REMARK 500 3 SER A 134 -78.99 -95.35 REMARK 500 3 PRO A 140 -174.39 -69.73 REMARK 500 3 MET A 145 -168.93 -163.22 REMARK 500 3 ILE A 148 41.40 -91.38 REMARK 500 3 CYS A 150 78.79 -165.15 REMARK 500 3 ILE A 153 77.10 50.54 REMARK 500 3 GLN A 168 46.28 -91.23 REMARK 500 4 HIS A 114 99.09 -175.14 REMARK 500 4 PRO A 140 -164.25 -69.74 REMARK 500 4 MET A 145 -166.54 -162.28 REMARK 500 4 ILE A 148 42.59 -91.25 REMARK 500 4 PRO A 151 77.53 -69.81 REMARK 500 4 TYR A 161 63.39 64.16 REMARK 500 4 GLN A 168 36.26 -90.63 REMARK 500 4 HIS A 174 -175.56 -63.40 REMARK 500 5 GLN A 105 44.33 -102.04 REMARK 500 5 THR A 107 -82.08 -73.42 REMARK 500 5 HIS A 114 90.83 -174.35 REMARK 500 5 ILE A 148 48.30 -90.20 REMARK 500 5 CYS A 150 77.53 -164.35 REMARK 500 5 GLN A 168 45.00 -91.16 REMARK 500 6 GLN A 105 34.50 -95.42 REMARK 500 6 PHE A 109 42.28 -155.02 REMARK 500 6 CYS A 112 172.12 -56.37 REMARK 500 6 HIS A 114 82.22 -175.06 REMARK 500 6 LEU A 139 152.99 63.27 REMARK 500 6 ILE A 148 40.54 -91.09 REMARK 500 6 CYS A 150 82.16 -157.22 REMARK 500 6 ASP A 152 -74.76 -110.69 REMARK 500 6 ILE A 153 77.90 47.33 REMARK 500 6 GLN A 168 45.92 -90.98 REMARK 500 7 PHE A 109 76.09 -151.88 REMARK 500 7 CYS A 112 177.79 -55.40 REMARK 500 7 HIS A 114 83.50 -171.32 REMARK 500 REMARK 500 THIS ENTRY HAS 167 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25887 RELATED DB: BMRB DBREF 2N99 A 101 175 UNP Q9BZG9 LYNX1_HUMAN 57 131 SEQADV 2N99 MET A 100 UNP Q9BZG9 INITIATING METHIONINE SEQRES 1 A 76 MET ILE TRP CYS HIS GLN CYS THR GLY PHE GLY GLY CYS SEQRES 2 A 76 SER HIS GLY SER ARG CYS LEU ARG ASP SER THR HIS CYS SEQRES 3 A 76 VAL THR THR ALA THR ARG VAL LEU SER ASN THR GLU ASP SEQRES 4 A 76 LEU PRO LEU VAL THR LYS MET CYS HIS ILE GLY CYS PRO SEQRES 5 A 76 ASP ILE PRO SER LEU GLY LEU GLY PRO TYR VAL SER ILE SEQRES 6 A 76 ALA CYS CYS GLN THR SER LEU CYS ASN HIS ASP HELIX 1 1 ILE A 153 GLY A 157 5 5 SHEET 1 A 2 TRP A 102 HIS A 104 0 SHEET 2 A 2 GLY A 115 ARG A 117 -1 O SER A 116 N CYS A 103 SHEET 1 B 3 LEU A 141 HIS A 147 0 SHEET 2 B 3 HIS A 124 THR A 130 -1 N VAL A 126 O MET A 145 SHEET 3 B 3 SER A 163 CYS A 167 -1 O ALA A 165 N THR A 127 SSBOND 1 CYS A 103 CYS A 125 1555 1555 1.91 SSBOND 2 CYS A 106 CYS A 112 1555 1555 1.97 SSBOND 3 CYS A 118 CYS A 146 1555 1555 2.00 SSBOND 4 CYS A 150 CYS A 166 1555 1555 2.13 SSBOND 5 CYS A 167 CYS A 172 1555 1555 1.92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1