data_2N9F # _entry.id 2N9F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104588 RCSB ? ? 2N9F PDB pdb_00002n9f 10.2210/pdb2n9f/pdb 25903 BMRB ? 10.13018/BMR25903 D_1000104588 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-31 2 'Structure model' 1 1 2020-07-29 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Database references' 5 3 'Structure model' Other 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' pdbx_entity_src_syn 3 2 'Structure model' pdbx_nmr_software 4 2 'Structure model' pdbx_nmr_spectrometer 5 2 'Structure model' struct_conn 6 3 'Structure model' chem_comp 7 3 'Structure model' database_2 8 3 'Structure model' pdbx_database_status 9 4 'Structure model' chem_comp_atom 10 4 'Structure model' chem_comp_bond 11 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.mon_nstd_flag' 2 2 'Structure model' '_chem_comp.type' 3 2 'Structure model' '_pdbx_nmr_software.name' 4 2 'Structure model' '_pdbx_nmr_spectrometer.model' 5 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 3 'Structure model' '_chem_comp.pdbx_synonyms' 7 3 'Structure model' '_database_2.pdbx_DOI' 8 3 'Structure model' '_database_2.pdbx_database_accession' 9 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 10 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N9F _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-11-20 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 25903 BMRB unspecified . 2N9H PDB unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gomez-Pinto, I.' 1 'Vengut-Climent, E.' 2 'Lucas, R.' 3 'Avino, A.' 4 'Eritja, R.' 5 'Gonzalez-Ibanez, C.' 6 'Morales, J.' 7 'Penalver, P.' 8 'Fonseca-Guerra, C.' 9 'Bickelhaupt, M.' 10 # _citation.id primary _citation.title 'Glucose-Nucleobase Pseudo Base Pairs: Biomolecular Interactions within DNA.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 55 _citation.page_first 8643 _citation.page_last 8647 _citation.year 2016 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27328804 _citation.pdbx_database_id_DOI 10.1002/anie.201603510 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vengut-Climent, E.' 1 ? primary 'Gomez-Pinto, I.' 2 ? primary 'Lucas, R.' 3 ? primary 'Penalver, P.' 4 ? primary 'Avino, A.' 5 ? primary 'Fonseca Guerra, C.' 6 ? primary 'Bickelhaupt, F.M.' 7 ? primary 'Eritja, R.' 8 ? primary 'Gonzalez, C.' 9 ? primary 'Morales, J.C.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*AP*GP*CP*GP*GP*TP*CP*AP*TP*C)-3') ; 3638.379 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*AP*TP*GP*AP*CP*(4JA)P*GP*CP*TP*AP*G)-3') ; 3698.435 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DT)(DA)(DG)(DC)(DG)(DG)(DT)(DC)(DA)(DT)(DC)' CTAGCGGTCATC A ? 2 polydeoxyribonucleotide no yes '(DG)(DA)(DT)(DG)(DA)(DC)(4JA)(DG)(DC)(DT)(DA)(DG)' GATGACXGCTAG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DA n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DA n 1 11 DT n 1 12 DC n 2 1 DG n 2 2 DA n 2 3 DT n 2 4 DG n 2 5 DA n 2 6 DC n 2 7 4JA n 2 8 DG n 2 9 DC n 2 10 DT n 2 11 DA n 2 12 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4JA D-saccharide n '(2S)-3-[(6-deoxy-beta-D-glucopyranosyl)oxy]-2-hydroxypropyl dihydrogen phosphate' ;(2S)-3-[(6-deoxy-beta-D-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate; (2S)-3-[(6-deoxy-D-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate; (2S)-3-[(6-deoxy-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate ; 'C9 H19 O10 P' 318.215 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DC 12 12 12 DC DC A . n B 2 1 DG 1 13 13 DG DG B . n B 2 2 DA 2 14 14 DA DA B . n B 2 3 DT 3 15 15 DT DT B . n B 2 4 DG 4 16 16 DG DG B . n B 2 5 DA 5 17 17 DA DA B . n B 2 6 DC 6 18 18 DC DC B . n B 2 7 4JA 7 19 19 4JA GL6 B . n B 2 8 DG 8 20 20 DG DG B . n B 2 9 DC 9 21 21 DC DC B . n B 2 10 DT 10 22 22 DT DT B . n B 2 11 DA 11 23 23 DA DA B . n B 2 12 DG 12 24 24 DG DG B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2N9F _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N9F _struct.title 'Glucose as non natural nucleobase' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N9F _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Carbohydrate-DNA interaction, carbohydrate nucleobase, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2N9F 2N9F 1 ? ? ? 2 PDB 2N9F 2N9F 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2N9F A 1 ? 12 ? 2N9F 1 ? 12 ? 1 12 2 2 2N9F B 1 ? 12 ? 2N9F 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DC 6 "O3'" ? ? ? 1_555 B 4JA 7 P ? ? B DC 18 B 4JA 19 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale both ? B 4JA 7 "O3'" ? ? ? 1_555 B DG 8 P ? ? B 4JA 19 B DG 20 1_555 ? ? ? ? ? ? ? 1.612 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 2 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 2 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 3 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 3 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 10 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 10 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 11 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 11 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 113.91 117.00 -3.09 0.50 N 2 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.66 118.60 -3.94 0.60 N 3 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 116.04 119.90 -3.86 0.60 N 4 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.67 122.90 -4.23 0.60 N 5 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.76 108.30 2.46 0.30 N 6 1 C4 A DA 10 ? ? C5 A DA 10 ? ? C6 A DA 10 ? ? 113.93 117.00 -3.07 0.50 N 7 1 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 114.89 118.60 -3.71 0.60 N 8 1 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.15 108.30 2.85 0.30 N 9 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 110.17 108.30 1.87 0.30 N 10 1 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 118.79 122.90 -4.11 0.60 N 11 1 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.82 117.00 -3.18 0.50 N 12 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.90 108.30 2.60 0.30 N 13 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 113.34 108.30 5.04 0.30 N 14 1 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 117.60 121.90 -4.30 0.70 N 15 1 "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1 B DT 22 ? ? 111.00 108.30 2.70 0.30 N 16 1 C6 B DT 22 ? ? C5 B DT 22 ? ? C7 B DT 22 ? ? 118.21 122.90 -4.69 0.60 N 17 1 "C3'" B DA 23 ? ? "C2'" B DA 23 ? ? "C1'" B DA 23 ? ? 97.51 102.40 -4.89 0.80 N 18 1 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 111.65 108.30 3.35 0.30 N 19 2 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.21 108.30 2.91 0.30 N 20 2 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 113.93 117.00 -3.07 0.50 N 21 2 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 112.90 118.60 -5.70 0.60 N 22 2 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.14 108.30 2.84 0.30 N 23 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.08 108.30 2.78 0.30 N 24 2 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.70 108.30 2.40 0.30 N 25 2 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.73 108.30 2.43 0.30 N 26 2 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.87 108.30 3.57 0.30 N 27 2 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.30 122.90 -3.60 0.60 N 28 2 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 111.11 108.30 2.81 0.30 N 29 2 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.25 108.30 2.95 0.30 N 30 2 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 110.70 108.30 2.40 0.30 N 31 2 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 118.53 122.90 -4.37 0.60 N 32 2 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 110.72 108.30 2.42 0.30 N 33 2 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 113.40 108.30 5.10 0.30 N 34 2 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 112.69 108.30 4.39 0.30 N 35 2 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 117.40 121.90 -4.50 0.70 N 36 2 "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1 B DT 22 ? ? 111.81 108.30 3.51 0.30 N 37 2 C6 B DT 22 ? ? C5 B DT 22 ? ? C7 B DT 22 ? ? 118.30 122.90 -4.60 0.60 N 38 2 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 113.97 108.30 5.67 0.30 N 39 2 N1 B DA 23 ? ? C6 B DA 23 ? ? N6 B DA 23 ? ? 114.93 118.60 -3.67 0.60 N 40 2 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 110.31 108.30 2.01 0.30 N 41 3 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.26 108.30 1.96 0.30 N 42 3 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 113.62 117.00 -3.38 0.50 N 43 3 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.53 118.60 -4.07 0.60 N 44 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.88 108.30 2.58 0.30 N 45 3 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.15 122.90 -4.75 0.60 N 46 3 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.72 108.30 2.42 0.30 N 47 3 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 114.84 118.60 -3.76 0.60 N 48 3 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.03 108.30 2.73 0.30 N 49 3 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.63 122.90 -4.27 0.60 N 50 3 C5 B DA 14 ? ? C6 B DA 14 ? ? N1 B DA 14 ? ? 120.73 117.70 3.03 0.50 N 51 3 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 118.07 122.90 -4.83 0.60 N 52 3 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.42 108.30 2.12 0.30 N 53 3 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 114.00 117.00 -3.00 0.50 N 54 3 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 114.61 118.60 -3.99 0.60 N 55 3 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 112.33 108.30 4.03 0.30 N 56 3 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 112.02 108.30 3.72 0.30 N 57 3 N1 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 122.76 118.90 3.86 0.60 N 58 3 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 117.18 121.90 -4.72 0.70 N 59 3 "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1 B DT 22 ? ? 111.55 108.30 3.25 0.30 N 60 3 C6 B DT 22 ? ? C5 B DT 22 ? ? C7 B DT 22 ? ? 117.87 122.90 -5.03 0.60 N 61 3 C4 B DA 23 ? ? C5 B DA 23 ? ? C6 B DA 23 ? ? 113.91 117.00 -3.09 0.50 N 62 4 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.24 108.30 3.94 0.30 N 63 4 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.11 108.30 2.81 0.30 N 64 4 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.90 122.90 -4.00 0.60 N 65 4 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 111.05 108.30 2.75 0.30 N 66 4 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 117.60 121.90 -4.30 0.70 N 67 4 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.98 108.30 2.68 0.30 N 68 4 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 118.87 122.90 -4.03 0.60 N 69 4 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.52 108.30 2.22 0.30 N 70 4 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 114.84 118.60 -3.76 0.60 N 71 4 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 113.07 108.30 4.77 0.30 N 72 4 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 113.49 108.30 5.19 0.30 N 73 4 N1 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 122.61 118.90 3.71 0.60 N 74 4 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 116.90 121.90 -5.00 0.70 N 75 4 "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1 B DT 22 ? ? 113.22 108.30 4.92 0.30 N 76 4 N1 B DA 23 ? ? C6 B DA 23 ? ? N6 B DA 23 ? ? 114.68 118.60 -3.92 0.60 N 77 5 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.01 108.30 2.71 0.30 N 78 5 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.56 118.60 -4.04 0.60 N 79 5 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.84 108.30 2.54 0.30 N 80 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.14 108.30 2.84 0.30 N 81 5 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.72 108.30 2.42 0.30 N 82 5 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.34 122.90 -4.56 0.60 N 83 5 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 111.00 108.30 2.70 0.30 N 84 5 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 117.66 121.90 -4.24 0.70 N 85 5 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 114.65 118.60 -3.95 0.60 N 86 5 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.26 108.30 2.96 0.30 N 87 5 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.22 122.90 -3.68 0.60 N 88 5 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 114.94 118.60 -3.66 0.60 N 89 5 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 110.50 108.30 2.20 0.30 N 90 5 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 118.69 122.90 -4.21 0.60 N 91 5 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 114.13 108.30 5.83 0.30 N 92 5 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 111.76 108.30 3.46 0.30 N 93 5 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 117.27 121.90 -4.63 0.70 N 94 5 "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1 B DT 22 ? ? 111.65 108.30 3.35 0.30 N 95 5 C6 B DT 22 ? ? C5 B DT 22 ? ? C7 B DT 22 ? ? 118.73 122.90 -4.17 0.60 N 96 5 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 113.20 108.30 4.90 0.30 N 97 6 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.21 108.30 1.91 0.30 N 98 6 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.97 118.60 -3.63 0.60 N 99 6 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.19 108.30 1.89 0.30 N 100 6 N1 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 116.29 119.90 -3.61 0.60 N 101 6 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.40 108.30 2.10 0.30 N 102 6 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.68 122.90 -4.22 0.60 N 103 6 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.92 108.30 2.62 0.30 N 104 6 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 114.47 118.60 -4.13 0.60 N 105 6 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.36 108.30 3.06 0.30 N 106 6 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.29 122.90 -3.61 0.60 N 107 6 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 110.42 108.30 2.12 0.30 N 108 6 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 118.49 122.90 -4.41 0.60 N 109 6 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 114.69 118.60 -3.91 0.60 N 110 6 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 112.48 108.30 4.18 0.30 N 111 6 N1 B DC 18 ? ? C2 B DC 18 ? ? O2 B DC 18 ? ? 122.80 118.90 3.90 0.60 N 112 6 N3 B DC 18 ? ? C2 B DC 18 ? ? O2 B DC 18 ? ? 116.72 121.90 -5.18 0.70 N 113 6 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 111.20 108.30 2.90 0.30 N 114 6 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 117.24 121.90 -4.66 0.70 N 115 6 "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1 B DT 22 ? ? 110.82 108.30 2.52 0.30 N 116 6 C6 B DT 22 ? ? C5 B DT 22 ? ? C7 B DT 22 ? ? 118.45 122.90 -4.45 0.60 N 117 6 "C3'" B DA 23 ? ? "C2'" B DA 23 ? ? "C1'" B DA 23 ? ? 97.28 102.40 -5.12 0.80 N 118 6 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 111.55 108.30 3.25 0.30 N 119 6 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 110.61 108.30 2.31 0.30 N 120 6 N1 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 116.15 119.90 -3.75 0.60 N 121 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.94 108.30 2.64 0.30 N 122 7 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.78 118.60 -3.82 0.60 N 123 7 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.17 108.30 2.87 0.30 N 124 7 N9 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 107.82 105.40 2.42 0.40 N 125 7 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 113.87 119.90 -6.03 0.70 N 126 7 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.36 108.30 2.06 0.30 N 127 7 N1 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 116.27 119.90 -3.63 0.60 N 128 7 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.50 108.30 2.20 0.30 N 129 7 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.23 122.90 -3.67 0.60 N 130 7 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.60 108.30 2.30 0.30 N 131 7 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 114.65 118.60 -3.95 0.60 N 132 7 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.37 108.30 2.07 0.30 N 133 7 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 114.96 118.60 -3.64 0.60 N 134 7 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 118.88 122.90 -4.02 0.60 N 135 7 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.96 108.30 2.66 0.30 N 136 7 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.97 117.00 -3.03 0.50 N 137 7 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 114.95 118.60 -3.65 0.60 N 138 7 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 112.89 108.30 4.59 0.30 N 139 7 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 112.92 108.30 4.62 0.30 N 140 7 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 117.16 121.90 -4.74 0.70 N 141 7 "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1 B DT 22 ? ? 112.45 108.30 4.15 0.30 N 142 7 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 110.46 108.30 2.16 0.30 N 143 7 N1 B DA 23 ? ? C6 B DA 23 ? ? N6 B DA 23 ? ? 114.76 118.60 -3.84 0.60 N 144 8 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.83 108.30 2.53 0.30 N 145 8 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 113.86 117.00 -3.14 0.50 N 146 8 C5 A DA 3 ? ? C6 A DA 3 ? ? N1 A DA 3 ? ? 121.04 117.70 3.34 0.50 N 147 8 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.60 118.60 -4.00 0.60 N 148 8 N1 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 116.25 119.90 -3.65 0.60 N 149 8 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.56 108.30 2.26 0.30 N 150 8 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.71 122.90 -5.19 0.60 N 151 8 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.63 108.30 2.33 0.30 N 152 8 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 117.69 121.90 -4.21 0.70 N 153 8 C5 A DA 10 ? ? C6 A DA 10 ? ? N1 A DA 10 ? ? 120.80 117.70 3.10 0.50 N 154 8 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 114.36 118.60 -4.24 0.60 N 155 8 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.57 108.30 2.27 0.30 N 156 8 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.75 122.90 -4.15 0.60 N 157 8 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 114.75 118.60 -3.85 0.60 N 158 8 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 118.03 122.90 -4.87 0.60 N 159 8 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.81 117.00 -3.19 0.50 N 160 8 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.02 117.70 3.32 0.50 N 161 8 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 114.45 118.60 -4.15 0.60 N 162 8 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 112.85 108.30 4.55 0.30 N 163 8 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 112.61 108.30 4.31 0.30 N 164 8 N1 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 122.81 118.90 3.91 0.60 N 165 8 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 116.98 121.90 -4.92 0.70 N 166 8 "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1 B DT 22 ? ? 112.66 108.30 4.36 0.30 N 167 8 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 112.65 108.30 4.35 0.30 N 168 8 C4 B DA 23 ? ? C5 B DA 23 ? ? C6 B DA 23 ? ? 113.85 117.00 -3.15 0.50 N 169 8 C5 B DA 23 ? ? C6 B DA 23 ? ? N1 B DA 23 ? ? 120.78 117.70 3.08 0.50 N 170 8 N1 B DA 23 ? ? C6 B DA 23 ? ? N6 B DA 23 ? ? 114.98 118.60 -3.62 0.60 N 171 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.12 108.30 1.82 0.30 N 172 9 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.59 108.30 2.29 0.30 N 173 9 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.33 118.60 -4.27 0.60 N 174 9 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.36 108.30 2.06 0.30 N 175 9 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.11 108.30 1.81 0.30 N 176 9 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 116.13 119.90 -3.77 0.60 N 177 9 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.53 108.30 2.23 0.30 N 178 9 N1 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 116.21 119.90 -3.69 0.60 N 179 9 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.74 108.30 2.44 0.30 N 180 9 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.25 122.90 -3.65 0.60 N 181 9 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.36 108.30 2.06 0.30 N 182 9 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.00 108.30 2.70 0.30 N 183 9 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 118.52 122.90 -4.38 0.60 N 184 9 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 110.15 108.30 1.85 0.30 N 185 9 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 113.24 108.30 4.94 0.30 N 186 9 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 113.84 108.30 5.54 0.30 N 187 9 N1 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 122.52 118.90 3.62 0.60 N 188 9 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 116.94 121.90 -4.96 0.70 N 189 9 "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1 B DT 22 ? ? 113.28 108.30 4.98 0.30 N 190 9 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 112.80 108.30 4.50 0.30 N 191 9 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 110.60 108.30 2.30 0.30 N 192 9 N1 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 116.06 119.90 -3.84 0.60 N 193 10 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.17 108.30 1.87 0.30 N 194 10 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.29 108.30 1.99 0.30 N 195 10 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.29 118.60 -4.31 0.60 N 196 10 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 116.15 119.90 -3.75 0.60 N 197 10 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.48 108.30 2.18 0.30 N 198 10 "C3'" A DG 7 ? ? "O3'" A DG 7 ? ? P A DT 8 ? ? 126.90 119.70 7.20 1.20 Y 199 10 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.33 108.30 2.03 0.30 N 200 10 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.39 108.30 2.09 0.30 N 201 10 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.06 108.30 2.76 0.30 N 202 10 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.37 108.30 2.07 0.30 N 203 10 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 118.94 122.90 -3.96 0.60 N 204 10 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.56 108.30 2.26 0.30 N 205 10 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 114.80 118.60 -3.80 0.60 N 206 10 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 113.30 108.30 5.00 0.30 N 207 10 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 114.64 108.30 6.34 0.30 N 208 10 N1 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 122.54 118.90 3.64 0.60 N 209 10 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 117.08 121.90 -4.82 0.70 N 210 10 "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1 B DT 22 ? ? 112.65 108.30 4.35 0.30 N 211 10 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 112.66 108.30 4.36 0.30 N 212 10 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 110.76 108.30 2.46 0.30 N 213 10 N1 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 116.24 119.90 -3.66 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG B 20 ? ? 0.071 'SIDE CHAIN' 2 2 DG A 6 ? ? 0.065 'SIDE CHAIN' 3 2 DG B 20 ? ? 0.068 'SIDE CHAIN' 4 2 DA B 23 ? ? 0.052 'SIDE CHAIN' 5 3 DG B 20 ? ? 0.071 'SIDE CHAIN' 6 3 DG B 24 ? ? 0.048 'SIDE CHAIN' 7 4 DA A 3 ? ? 0.099 'SIDE CHAIN' 8 4 DG B 20 ? ? 0.054 'SIDE CHAIN' 9 5 DG B 20 ? ? 0.064 'SIDE CHAIN' 10 5 DA B 23 ? ? 0.053 'SIDE CHAIN' 11 6 DG B 20 ? ? 0.063 'SIDE CHAIN' 12 7 DC A 1 ? ? 0.059 'SIDE CHAIN' 13 7 DA A 3 ? ? 0.075 'SIDE CHAIN' 14 7 DG A 7 ? ? 0.066 'SIDE CHAIN' 15 7 DG B 20 ? ? 0.054 'SIDE CHAIN' 16 8 DC A 1 ? ? 0.059 'SIDE CHAIN' 17 8 DG B 20 ? ? 0.052 'SIDE CHAIN' 18 8 DA B 23 ? ? 0.053 'SIDE CHAIN' 19 9 DA B 23 ? ? 0.054 'SIDE CHAIN' 20 10 DA A 3 ? ? 0.059 'SIDE CHAIN' 21 10 DG B 20 ? ? 0.061 'SIDE CHAIN' 22 10 DA B 23 ? ? 0.057 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N9F _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N9F _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents ;1 mM DNA (5'-D(*CP*TP*AP*GP*CP*GP*GP*TP*CP*AP*TP*C)-3'), 1 mM DNA (5'-D(*GP*AP*TP*GP*AP*CP*(GL6)P*GP*CP*TP*AP*G)-3'), 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;DNA (5'-D(*CP*TP*AP*GP*CP*GP*GP*TP*CP*AP*TP*C)-3')-1 ; 1 ? mM ? 1 ;DNA (5'-D(*GP*AP*TP*GP*AP*CP*(GL6)P*GP*CP*TP*AP*G)-3')-2 ; 1 ? mM ? 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 'Potassium phosphate' _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 279.6 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-1H TOCSY' 1 4 1 '2D 1H-1H COSY' # _pdbx_nmr_details.entry_id 2N9F _pdbx_nmr_details.text 'The structure was determined using NOE data' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2N9F _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 265 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 131 _pdbx_nmr_constraints.NOE_long_range_total_count 16 _pdbx_nmr_constraints.NOE_medium_range_total_count 235 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 104 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2N9F _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' refinement Amber ? 1 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' 'chemical shift assignment' Amber ? 2 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' processing Amber ? 3 Goddard refinement Amber ? 4 Goddard 'chemical shift assignment' Amber ? 5 Goddard processing Amber ? 6 'Bruker Biospin' refinement Amber ? 7 'Bruker Biospin' 'chemical shift assignment' Amber ? 8 'Bruker Biospin' processing Amber ? 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4JA P P N N 1 4JA O2 O N N 2 4JA O3 O N N 3 4JA O4 O N N 4 4JA O5 O N N 5 4JA C1 C N R 6 4JA C2 C N R 7 4JA C3 C N S 8 4JA C4 C N S 9 4JA C5 C N R 10 4JA C6 C N N 11 4JA OP1 O N N 12 4JA OP2 O N N 13 4JA "O5'" O N N 14 4JA "C5'" C N N 15 4JA "C3'" C N S 16 4JA "C2'" C N N 17 4JA O1 O N N 18 4JA "O3'" O N N 19 4JA HO2 H N N 20 4JA HO3 H N N 21 4JA HO4 H N N 22 4JA H1 H N N 23 4JA H2 H N N 24 4JA H3 H N N 25 4JA H4 H N N 26 4JA H5 H N N 27 4JA H61 H N N 28 4JA H62 H N N 29 4JA H63 H N N 30 4JA HOP2 H N N 31 4JA "H5''" H N N 32 4JA "H5'" H N N 33 4JA "H3'" H N N 34 4JA "H2''" H N N 35 4JA "H2'" H N N 36 4JA "HO3'" H N N 37 4JA OP3 O N N 38 4JA HOP3 H N N 39 DA OP3 O N N 40 DA P P N N 41 DA OP1 O N N 42 DA OP2 O N N 43 DA "O5'" O N N 44 DA "C5'" C N N 45 DA "C4'" C N R 46 DA "O4'" O N N 47 DA "C3'" C N S 48 DA "O3'" O N N 49 DA "C2'" C N N 50 DA "C1'" C N R 51 DA N9 N Y N 52 DA C8 C Y N 53 DA N7 N Y N 54 DA C5 C Y N 55 DA C6 C Y N 56 DA N6 N N N 57 DA N1 N Y N 58 DA C2 C Y N 59 DA N3 N Y N 60 DA C4 C Y N 61 DA HOP3 H N N 62 DA HOP2 H N N 63 DA "H5'" H N N 64 DA "H5''" H N N 65 DA "H4'" H N N 66 DA "H3'" H N N 67 DA "HO3'" H N N 68 DA "H2'" H N N 69 DA "H2''" H N N 70 DA "H1'" H N N 71 DA H8 H N N 72 DA H61 H N N 73 DA H62 H N N 74 DA H2 H N N 75 DC OP3 O N N 76 DC P P N N 77 DC OP1 O N N 78 DC OP2 O N N 79 DC "O5'" O N N 80 DC "C5'" C N N 81 DC "C4'" C N R 82 DC "O4'" O N N 83 DC "C3'" C N S 84 DC "O3'" O N N 85 DC "C2'" C N N 86 DC "C1'" C N R 87 DC N1 N N N 88 DC C2 C N N 89 DC O2 O N N 90 DC N3 N N N 91 DC C4 C N N 92 DC N4 N N N 93 DC C5 C N N 94 DC C6 C N N 95 DC HOP3 H N N 96 DC HOP2 H N N 97 DC "H5'" H N N 98 DC "H5''" H N N 99 DC "H4'" H N N 100 DC "H3'" H N N 101 DC "HO3'" H N N 102 DC "H2'" H N N 103 DC "H2''" H N N 104 DC "H1'" H N N 105 DC H41 H N N 106 DC H42 H N N 107 DC H5 H N N 108 DC H6 H N N 109 DG OP3 O N N 110 DG P P N N 111 DG OP1 O N N 112 DG OP2 O N N 113 DG "O5'" O N N 114 DG "C5'" C N N 115 DG "C4'" C N R 116 DG "O4'" O N N 117 DG "C3'" C N S 118 DG "O3'" O N N 119 DG "C2'" C N N 120 DG "C1'" C N R 121 DG N9 N Y N 122 DG C8 C Y N 123 DG N7 N Y N 124 DG C5 C Y N 125 DG C6 C N N 126 DG O6 O N N 127 DG N1 N N N 128 DG C2 C N N 129 DG N2 N N N 130 DG N3 N N N 131 DG C4 C Y N 132 DG HOP3 H N N 133 DG HOP2 H N N 134 DG "H5'" H N N 135 DG "H5''" H N N 136 DG "H4'" H N N 137 DG "H3'" H N N 138 DG "HO3'" H N N 139 DG "H2'" H N N 140 DG "H2''" H N N 141 DG "H1'" H N N 142 DG H8 H N N 143 DG H1 H N N 144 DG H21 H N N 145 DG H22 H N N 146 DT OP3 O N N 147 DT P P N N 148 DT OP1 O N N 149 DT OP2 O N N 150 DT "O5'" O N N 151 DT "C5'" C N N 152 DT "C4'" C N R 153 DT "O4'" O N N 154 DT "C3'" C N S 155 DT "O3'" O N N 156 DT "C2'" C N N 157 DT "C1'" C N R 158 DT N1 N N N 159 DT C2 C N N 160 DT O2 O N N 161 DT N3 N N N 162 DT C4 C N N 163 DT O4 O N N 164 DT C5 C N N 165 DT C7 C N N 166 DT C6 C N N 167 DT HOP3 H N N 168 DT HOP2 H N N 169 DT "H5'" H N N 170 DT "H5''" H N N 171 DT "H4'" H N N 172 DT "H3'" H N N 173 DT "HO3'" H N N 174 DT "H2'" H N N 175 DT "H2''" H N N 176 DT "H1'" H N N 177 DT H3 H N N 178 DT H71 H N N 179 DT H72 H N N 180 DT H73 H N N 181 DT H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4JA OP2 P sing N N 1 4JA C6 C5 sing N N 2 4JA P "O5'" sing N N 3 4JA P OP1 doub N N 4 4JA "O5'" "C5'" sing N N 5 4JA C5 O5 sing N N 6 4JA C5 C4 sing N N 7 4JA O5 C1 sing N N 8 4JA "C5'" "C3'" sing N N 9 4JA "C3'" "C2'" sing N N 10 4JA "C3'" "O3'" sing N N 11 4JA "C2'" O1 sing N N 12 4JA O4 C4 sing N N 13 4JA C4 C3 sing N N 14 4JA C1 O1 sing N N 15 4JA C1 C2 sing N N 16 4JA C3 C2 sing N N 17 4JA C3 O3 sing N N 18 4JA C2 O2 sing N N 19 4JA O2 HO2 sing N N 20 4JA O3 HO3 sing N N 21 4JA O4 HO4 sing N N 22 4JA C1 H1 sing N N 23 4JA C2 H2 sing N N 24 4JA C3 H3 sing N N 25 4JA C4 H4 sing N N 26 4JA C5 H5 sing N N 27 4JA C6 H61 sing N N 28 4JA C6 H62 sing N N 29 4JA C6 H63 sing N N 30 4JA OP2 HOP2 sing N N 31 4JA "C5'" "H5''" sing N N 32 4JA "C5'" "H5'" sing N N 33 4JA "C3'" "H3'" sing N N 34 4JA "C2'" "H2''" sing N N 35 4JA "C2'" "H2'" sing N N 36 4JA "O3'" "HO3'" sing N N 37 4JA P OP3 sing N N 38 4JA OP3 HOP3 sing N N 39 DA OP3 P sing N N 40 DA OP3 HOP3 sing N N 41 DA P OP1 doub N N 42 DA P OP2 sing N N 43 DA P "O5'" sing N N 44 DA OP2 HOP2 sing N N 45 DA "O5'" "C5'" sing N N 46 DA "C5'" "C4'" sing N N 47 DA "C5'" "H5'" sing N N 48 DA "C5'" "H5''" sing N N 49 DA "C4'" "O4'" sing N N 50 DA "C4'" "C3'" sing N N 51 DA "C4'" "H4'" sing N N 52 DA "O4'" "C1'" sing N N 53 DA "C3'" "O3'" sing N N 54 DA "C3'" "C2'" sing N N 55 DA "C3'" "H3'" sing N N 56 DA "O3'" "HO3'" sing N N 57 DA "C2'" "C1'" sing N N 58 DA "C2'" "H2'" sing N N 59 DA "C2'" "H2''" sing N N 60 DA "C1'" N9 sing N N 61 DA "C1'" "H1'" sing N N 62 DA N9 C8 sing Y N 63 DA N9 C4 sing Y N 64 DA C8 N7 doub Y N 65 DA C8 H8 sing N N 66 DA N7 C5 sing Y N 67 DA C5 C6 sing Y N 68 DA C5 C4 doub Y N 69 DA C6 N6 sing N N 70 DA C6 N1 doub Y N 71 DA N6 H61 sing N N 72 DA N6 H62 sing N N 73 DA N1 C2 sing Y N 74 DA C2 N3 doub Y N 75 DA C2 H2 sing N N 76 DA N3 C4 sing Y N 77 DC OP3 P sing N N 78 DC OP3 HOP3 sing N N 79 DC P OP1 doub N N 80 DC P OP2 sing N N 81 DC P "O5'" sing N N 82 DC OP2 HOP2 sing N N 83 DC "O5'" "C5'" sing N N 84 DC "C5'" "C4'" sing N N 85 DC "C5'" "H5'" sing N N 86 DC "C5'" "H5''" sing N N 87 DC "C4'" "O4'" sing N N 88 DC "C4'" "C3'" sing N N 89 DC "C4'" "H4'" sing N N 90 DC "O4'" "C1'" sing N N 91 DC "C3'" "O3'" sing N N 92 DC "C3'" "C2'" sing N N 93 DC "C3'" "H3'" sing N N 94 DC "O3'" "HO3'" sing N N 95 DC "C2'" "C1'" sing N N 96 DC "C2'" "H2'" sing N N 97 DC "C2'" "H2''" sing N N 98 DC "C1'" N1 sing N N 99 DC "C1'" "H1'" sing N N 100 DC N1 C2 sing N N 101 DC N1 C6 sing N N 102 DC C2 O2 doub N N 103 DC C2 N3 sing N N 104 DC N3 C4 doub N N 105 DC C4 N4 sing N N 106 DC C4 C5 sing N N 107 DC N4 H41 sing N N 108 DC N4 H42 sing N N 109 DC C5 C6 doub N N 110 DC C5 H5 sing N N 111 DC C6 H6 sing N N 112 DG OP3 P sing N N 113 DG OP3 HOP3 sing N N 114 DG P OP1 doub N N 115 DG P OP2 sing N N 116 DG P "O5'" sing N N 117 DG OP2 HOP2 sing N N 118 DG "O5'" "C5'" sing N N 119 DG "C5'" "C4'" sing N N 120 DG "C5'" "H5'" sing N N 121 DG "C5'" "H5''" sing N N 122 DG "C4'" "O4'" sing N N 123 DG "C4'" "C3'" sing N N 124 DG "C4'" "H4'" sing N N 125 DG "O4'" "C1'" sing N N 126 DG "C3'" "O3'" sing N N 127 DG "C3'" "C2'" sing N N 128 DG "C3'" "H3'" sing N N 129 DG "O3'" "HO3'" sing N N 130 DG "C2'" "C1'" sing N N 131 DG "C2'" "H2'" sing N N 132 DG "C2'" "H2''" sing N N 133 DG "C1'" N9 sing N N 134 DG "C1'" "H1'" sing N N 135 DG N9 C8 sing Y N 136 DG N9 C4 sing Y N 137 DG C8 N7 doub Y N 138 DG C8 H8 sing N N 139 DG N7 C5 sing Y N 140 DG C5 C6 sing N N 141 DG C5 C4 doub Y N 142 DG C6 O6 doub N N 143 DG C6 N1 sing N N 144 DG N1 C2 sing N N 145 DG N1 H1 sing N N 146 DG C2 N2 sing N N 147 DG C2 N3 doub N N 148 DG N2 H21 sing N N 149 DG N2 H22 sing N N 150 DG N3 C4 sing N N 151 DT OP3 P sing N N 152 DT OP3 HOP3 sing N N 153 DT P OP1 doub N N 154 DT P OP2 sing N N 155 DT P "O5'" sing N N 156 DT OP2 HOP2 sing N N 157 DT "O5'" "C5'" sing N N 158 DT "C5'" "C4'" sing N N 159 DT "C5'" "H5'" sing N N 160 DT "C5'" "H5''" sing N N 161 DT "C4'" "O4'" sing N N 162 DT "C4'" "C3'" sing N N 163 DT "C4'" "H4'" sing N N 164 DT "O4'" "C1'" sing N N 165 DT "C3'" "O3'" sing N N 166 DT "C3'" "C2'" sing N N 167 DT "C3'" "H3'" sing N N 168 DT "O3'" "HO3'" sing N N 169 DT "C2'" "C1'" sing N N 170 DT "C2'" "H2'" sing N N 171 DT "C2'" "H2''" sing N N 172 DT "C1'" N1 sing N N 173 DT "C1'" "H1'" sing N N 174 DT N1 C2 sing N N 175 DT N1 C6 sing N N 176 DT C2 O2 doub N N 177 DT C2 N3 sing N N 178 DT N3 C4 sing N N 179 DT N3 H3 sing N N 180 DT C4 O4 doub N N 181 DT C4 C5 sing N N 182 DT C5 C7 sing N N 183 DT C5 C6 doub N N 184 DT C7 H71 sing N N 185 DT C7 H72 sing N N 186 DT C7 H73 sing N N 187 DT C6 H6 sing N N 188 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2N9F 'double helix' 2N9F 'b-form double helix' 2N9F 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.047 -0.124 0.407 -10.590 -8.963 0.638 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DT 2 1_555 B DA 11 1_555 -0.178 -0.134 0.115 -6.132 -5.126 -3.474 2 A_DT2:DA23_B A 2 ? B 23 ? 20 1 1 A DA 3 1_555 B DT 10 1_555 0.006 -0.099 0.240 -5.919 -18.364 0.475 3 A_DA3:DT22_B A 3 ? B 22 ? 20 1 1 A DG 4 1_555 B DC 9 1_555 -0.012 -0.169 0.018 -13.888 -19.292 -2.049 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DC 5 1_555 B DG 8 1_555 -0.026 -0.180 0.313 -2.082 -22.993 -0.138 5 A_DC5:DG20_B A 5 ? B 20 ? 19 1 1 A DG 7 1_555 B DC 6 1_555 -0.145 -0.174 0.400 15.409 -14.029 -1.144 6 A_DG7:DC18_B A 7 ? B 18 ? 19 1 1 A DT 8 1_555 B DA 5 1_555 -0.032 -0.165 0.103 7.204 -18.268 1.088 7 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.154 -0.242 0.015 0.159 -19.843 -0.167 8 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DA 10 1_555 B DT 3 1_555 -0.035 -0.195 0.145 -0.132 -12.328 2.648 9 A_DA10:DT15_B A 10 ? B 15 ? 20 1 1 A DT 11 1_555 B DA 2 1_555 -0.122 -0.136 0.263 -9.910 -12.725 -1.032 10 A_DT11:DA14_B A 11 ? B 14 ? 20 1 1 A DC 12 1_555 B DG 1 1_555 0.274 -0.193 0.143 -15.982 -7.392 0.111 11 A_DC12:DG13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DT 2 1_555 B DA 11 1_555 0.246 -0.158 3.180 4.091 0.948 38.772 -0.348 0.113 3.184 1.423 -6.140 38.990 1 AA_DC1DT2:DA23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DT 2 1_555 B DA 11 1_555 A DA 3 1_555 B DT 10 1_555 -0.149 -0.881 3.216 -2.390 7.276 26.985 -3.454 -0.228 2.886 15.206 4.996 28.032 2 AA_DT2DA3:DT22DA23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DA 3 1_555 B DT 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.161 -0.603 3.457 1.378 7.589 32.772 -2.326 0.511 3.232 13.223 -2.401 33.644 3 AA_DA3DG4:DC21DT22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DC 5 1_555 B DG 8 1_555 -1.006 -0.613 3.009 -3.647 0.221 29.814 -1.227 1.239 3.102 0.428 7.054 30.032 4 AA_DG4DC5:DG20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DC 5 1_555 B DG 8 1_555 A DG 7 1_555 B DC 6 1_555 -0.870 1.247 6.775 -3.522 7.642 63.370 0.484 0.502 6.905 7.241 3.337 63.869 5 AA_DC5DG7:DC18DG20_BB A 5 ? B 20 ? A 7 ? B 18 ? 1 A DG 7 1_555 B DC 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.033 -1.076 3.410 1.330 1.713 32.846 -2.202 0.293 3.347 3.025 -2.349 32.916 6 AA_DG7DT8:DA17DC18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.048 -0.552 3.240 1.698 4.277 37.240 -1.407 0.143 3.159 6.666 -2.646 37.513 7 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DA 10 1_555 B DT 3 1_555 -0.050 -0.035 3.204 -1.890 10.899 36.463 -1.413 -0.159 3.068 16.944 2.938 38.049 8 AA_DC9DA10:DT15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DA 10 1_555 B DT 3 1_555 A DT 11 1_555 B DA 2 1_555 -0.093 -0.868 3.448 -0.364 -2.462 31.986 -1.100 0.100 3.504 -4.459 0.658 32.080 9 AA_DA10DT11:DA14DT15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DT 11 1_555 B DA 2 1_555 A DC 12 1_555 B DG 1 1_555 -0.113 -0.599 3.376 2.997 0.008 39.327 -0.888 0.532 3.359 0.011 -4.445 39.436 10 AA_DT11DC12:DG13DA14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVANCE 1 'Bruker Avance' 800 Bruker AVANCE 2 'Bruker Avance' # _atom_sites.entry_id 2N9F _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_