data_2N9F
# 
_entry.id   2N9F 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.392 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_code 
_database_2.database_id 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
RCSB104588   RCSB  ?            ?                   
2N9F         PDB   pdb_00002n9f 10.2210/pdb2n9f/pdb 
25903        BMRB  ?            10.13018/BMR25903   
D_1000104588 WWPDB ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2016-08-31 
2 'Structure model' 1 1 2020-07-29 
3 'Structure model' 1 2 2023-06-14 
4 'Structure model' 1 3 2024-05-15 
# 
loop_
_pdbx_audit_revision_details.ordinal 
_pdbx_audit_revision_details.revision_ordinal 
_pdbx_audit_revision_details.data_content_type 
_pdbx_audit_revision_details.provider 
_pdbx_audit_revision_details.type 
_pdbx_audit_revision_details.description 
_pdbx_audit_revision_details.details 
1 1 'Structure model' repository 'Initial release' ?                          ? 
2 2 'Structure model' repository Remediation       'Carbohydrate remediation' ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Data collection'      
2 2 'Structure model' 'Derived calculations' 
3 2 'Structure model' 'Source and taxonomy'  
4 3 'Structure model' 'Database references'  
5 3 'Structure model' Other                  
6 3 'Structure model' 'Structure summary'    
7 4 'Structure model' 'Data collection'      
8 4 'Structure model' 'Database references'  
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1  2 'Structure model' chem_comp             
2  2 'Structure model' pdbx_entity_src_syn   
3  2 'Structure model' pdbx_nmr_software     
4  2 'Structure model' pdbx_nmr_spectrometer 
5  2 'Structure model' struct_conn           
6  3 'Structure model' chem_comp             
7  3 'Structure model' database_2            
8  3 'Structure model' pdbx_database_status  
9  4 'Structure model' chem_comp_atom        
10 4 'Structure model' chem_comp_bond        
11 4 'Structure model' database_2            
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  2 'Structure model' '_chem_comp.mon_nstd_flag'                   
2  2 'Structure model' '_chem_comp.type'                            
3  2 'Structure model' '_pdbx_nmr_software.name'                    
4  2 'Structure model' '_pdbx_nmr_spectrometer.model'               
5  2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'        
6  3 'Structure model' '_chem_comp.pdbx_synonyms'                   
7  3 'Structure model' '_database_2.pdbx_DOI'                       
8  3 'Structure model' '_database_2.pdbx_database_accession'        
9  3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 
10 4 'Structure model' '_database_2.pdbx_DOI'                       
# 
_pdbx_database_status.deposit_site                    BMRB 
_pdbx_database_status.entry_id                        2N9F 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.recvd_initial_deposition_date   2015-11-20 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.status_code_mr                  REL 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  REL 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            REL 
# 
loop_
_pdbx_database_related.db_id 
_pdbx_database_related.db_name 
_pdbx_database_related.content_type 
_pdbx_database_related.details 
25903 BMRB unspecified . 
2N9H  PDB  unspecified . 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Gomez-Pinto, I.'     1  
'Vengut-Climent, E.'  2  
'Lucas, R.'           3  
'Avino, A.'           4  
'Eritja, R.'          5  
'Gonzalez-Ibanez, C.' 6  
'Morales, J.'         7  
'Penalver, P.'        8  
'Fonseca-Guerra, C.'  9  
'Bickelhaupt, M.'     10 
# 
_citation.id                        primary 
_citation.title                     'Glucose-Nucleobase Pseudo Base Pairs: Biomolecular Interactions within DNA.' 
_citation.journal_abbrev            Angew.Chem.Int.Ed.Engl. 
_citation.journal_volume            55 
_citation.page_first                8643 
_citation.page_last                 8647 
_citation.year                      2016 
_citation.journal_id_ASTM           ? 
_citation.country                   GE 
_citation.journal_id_ISSN           1433-7851 
_citation.journal_id_CSD            9999 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   27328804 
_citation.pdbx_database_id_DOI      10.1002/anie.201603510 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Vengut-Climent, E.' 1  ? 
primary 'Gomez-Pinto, I.'    2  ? 
primary 'Lucas, R.'          3  ? 
primary 'Penalver, P.'       4  ? 
primary 'Avino, A.'          5  ? 
primary 'Fonseca Guerra, C.' 6  ? 
primary 'Bickelhaupt, F.M.'  7  ? 
primary 'Eritja, R.'         8  ? 
primary 'Gonzalez, C.'       9  ? 
primary 'Morales, J.C.'      10 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 
;DNA (5'-D(*CP*TP*AP*GP*CP*GP*GP*TP*CP*AP*TP*C)-3')
;
3638.379 1 ? ? ? ? 
2 polymer syn 
;DNA (5'-D(*GP*AP*TP*GP*AP*CP*(4JA)P*GP*CP*TP*AP*G)-3')
;
3698.435 1 ? ? ? ? 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 polydeoxyribonucleotide no no  '(DC)(DT)(DA)(DG)(DC)(DG)(DG)(DT)(DC)(DA)(DT)(DC)'  CTAGCGGTCATC A ? 
2 polydeoxyribonucleotide no yes '(DG)(DA)(DT)(DG)(DA)(DC)(4JA)(DG)(DC)(DT)(DA)(DG)' GATGACXGCTAG B ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC  n 
1 2  DT  n 
1 3  DA  n 
1 4  DG  n 
1 5  DC  n 
1 6  DG  n 
1 7  DG  n 
1 8  DT  n 
1 9  DC  n 
1 10 DA  n 
1 11 DT  n 
1 12 DC  n 
2 1  DG  n 
2 2  DA  n 
2 3  DT  n 
2 4  DG  n 
2 5  DA  n 
2 6  DC  n 
2 7  4JA n 
2 8  DG  n 
2 9  DC  n 
2 10 DT  n 
2 11 DA  n 
2 12 DG  n 
# 
loop_
_pdbx_entity_src_syn.entity_id 
_pdbx_entity_src_syn.pdbx_src_id 
_pdbx_entity_src_syn.pdbx_alt_source_flag 
_pdbx_entity_src_syn.pdbx_beg_seq_num 
_pdbx_entity_src_syn.pdbx_end_seq_num 
_pdbx_entity_src_syn.organism_scientific 
_pdbx_entity_src_syn.organism_common_name 
_pdbx_entity_src_syn.ncbi_taxonomy_id 
_pdbx_entity_src_syn.details 
1 1 sample ? ? 'synthetic construct' ? 32630 ? 
2 1 sample ? ? 'synthetic construct' ? 32630 ? 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
4JA D-saccharide  n '(2S)-3-[(6-deoxy-beta-D-glucopyranosyl)oxy]-2-hydroxypropyl dihydrogen phosphate' 
;(2S)-3-[(6-deoxy-beta-D-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate; (2S)-3-[(6-deoxy-D-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate; (2S)-3-[(6-deoxy-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate
;
'C9 H19 O10 P'    318.215 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"                                               ? 'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"                                                ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"                                               ? 'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"                                                       ? 'C10 H15 N2 O8 P' 322.208 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC  1  1  1  DC  DC  A . n 
A 1 2  DT  2  2  2  DT  DT  A . n 
A 1 3  DA  3  3  3  DA  DA  A . n 
A 1 4  DG  4  4  4  DG  DG  A . n 
A 1 5  DC  5  5  5  DC  DC  A . n 
A 1 6  DG  6  6  6  DG  DG  A . n 
A 1 7  DG  7  7  7  DG  DG  A . n 
A 1 8  DT  8  8  8  DT  DT  A . n 
A 1 9  DC  9  9  9  DC  DC  A . n 
A 1 10 DA  10 10 10 DA  DA  A . n 
A 1 11 DT  11 11 11 DT  DT  A . n 
A 1 12 DC  12 12 12 DC  DC  A . n 
B 2 1  DG  1  13 13 DG  DG  B . n 
B 2 2  DA  2  14 14 DA  DA  B . n 
B 2 3  DT  3  15 15 DT  DT  B . n 
B 2 4  DG  4  16 16 DG  DG  B . n 
B 2 5  DA  5  17 17 DA  DA  B . n 
B 2 6  DC  6  18 18 DC  DC  B . n 
B 2 7  4JA 7  19 19 4JA GL6 B . n 
B 2 8  DG  8  20 20 DG  DG  B . n 
B 2 9  DC  9  21 21 DC  DC  B . n 
B 2 10 DT  10 22 22 DT  DT  B . n 
B 2 11 DA  11 23 23 DA  DA  B . n 
B 2 12 DG  12 24 24 DG  DG  B . n 
# 
_exptl.absorpt_coefficient_mu     ? 
_exptl.absorpt_correction_T_max   ? 
_exptl.absorpt_correction_T_min   ? 
_exptl.absorpt_correction_type    ? 
_exptl.absorpt_process_details    ? 
_exptl.crystals_number            ? 
_exptl.details                    ? 
_exptl.entry_id                   2N9F 
_exptl.method                     'SOLUTION NMR' 
_exptl.method_details             ? 
# 
_struct.entry_id                  2N9F 
_struct.title                     'Glucose as non natural nucleobase' 
_struct.pdbx_model_details        'lowest energy, model1' 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        2N9F 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'Carbohydrate-DNA interaction, carbohydrate nucleobase, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
# 
loop_
_struct_ref.id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.pdbx_db_accession 
_struct_ref.entity_id 
_struct_ref.pdbx_align_begin 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_db_isoform 
1 PDB 2N9F 2N9F 1 ? ? ? 
2 PDB 2N9F 2N9F 2 ? ? ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 2N9F A 1 ? 12 ? 2N9F 1  ? 12 ? 1  12 
2 2 2N9F B 1 ? 12 ? 2N9F 13 ? 24 ? 13 24 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? B DC  6  "O3'" ? ? ? 1_555 B 4JA 7  P  ? ? B DC  18 B 4JA 19 1_555 ? ? ? ? ? ? ?            1.608 ? ? 
covale2  covale both ? B 4JA 7  "O3'" ? ? ? 1_555 B DG  8  P  ? ? B 4JA 19 B DG  20 1_555 ? ? ? ? ? ? ?            1.612 ? ? 
hydrog1  hydrog ?    ? A DC  1  N3    ? ? ? 1_555 B DG  12 N1 ? ? A DC  1  B DG  24 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A DC  1  N4    ? ? ? 1_555 B DG  12 O6 ? ? A DC  1  B DG  24 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A DC  1  O2    ? ? ? 1_555 B DG  12 N2 ? ? A DC  1  B DG  24 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A DT  2  N3    ? ? ? 1_555 B DA  11 N1 ? ? A DT  2  B DA  23 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A DT  2  O4    ? ? ? 1_555 B DA  11 N6 ? ? A DT  2  B DA  23 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A DA  3  N1    ? ? ? 1_555 B DT  10 N3 ? ? A DA  3  B DT  22 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A DA  3  N6    ? ? ? 1_555 B DT  10 O4 ? ? A DA  3  B DT  22 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A DG  4  N1    ? ? ? 1_555 B DC  9  N3 ? ? A DG  4  B DC  21 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A DG  4  N2    ? ? ? 1_555 B DC  9  O2 ? ? A DG  4  B DC  21 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DG  4  O6    ? ? ? 1_555 B DC  9  N4 ? ? A DG  4  B DC  21 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DC  5  N3    ? ? ? 1_555 B DG  8  N1 ? ? A DC  5  B DG  20 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A DC  5  N4    ? ? ? 1_555 B DG  8  O6 ? ? A DC  5  B DG  20 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A DC  5  O2    ? ? ? 1_555 B DG  8  N2 ? ? A DC  5  B DG  20 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A DG  7  N1    ? ? ? 1_555 B DC  6  N3 ? ? A DG  7  B DC  18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A DG  7  N2    ? ? ? 1_555 B DC  6  O2 ? ? A DG  7  B DC  18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A DG  7  O6    ? ? ? 1_555 B DC  6  N4 ? ? A DG  7  B DC  18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A DT  8  N3    ? ? ? 1_555 B DA  5  N1 ? ? A DT  8  B DA  17 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A DT  8  O4    ? ? ? 1_555 B DA  5  N6 ? ? A DT  8  B DA  17 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ?    ? A DC  9  N3    ? ? ? 1_555 B DG  4  N1 ? ? A DC  9  B DG  16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ?    ? A DC  9  N4    ? ? ? 1_555 B DG  4  O6 ? ? A DC  9  B DG  16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ?    ? A DC  9  O2    ? ? ? 1_555 B DG  4  N2 ? ? A DC  9  B DG  16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ?    ? A DA  10 N1    ? ? ? 1_555 B DT  3  N3 ? ? A DA  10 B DT  15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ?    ? A DA  10 N6    ? ? ? 1_555 B DT  3  O4 ? ? A DA  10 B DT  15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ?    ? A DT  11 N3    ? ? ? 1_555 B DA  2  N1 ? ? A DT  11 B DA  14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ?    ? A DT  11 O4    ? ? ? 1_555 B DA  2  N6 ? ? A DT  11 B DA  14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ?    ? A DC  12 N3    ? ? ? 1_555 B DG  1  N1 ? ? A DC  12 B DG  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog27 hydrog ?    ? A DC  12 N4    ? ? ? 1_555 B DG  1  O6 ? ? A DC  12 B DG  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog28 hydrog ?    ? A DC  12 O2    ? ? ? 1_555 B DG  1  N2 ? ? A DC  12 B DG  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1   1  C4    A DA 3  ? ? C5    A DA 3  ? ? C6    A DA 3  ? ? 113.91 117.00 -3.09 0.50 N 
2   1  N1    A DA 3  ? ? C6    A DA 3  ? ? N6    A DA 3  ? ? 114.66 118.60 -3.94 0.60 N 
3   1  N1    A DG 6  ? ? C6    A DG 6  ? ? O6    A DG 6  ? ? 116.04 119.90 -3.86 0.60 N 
4   1  C6    A DT 8  ? ? C5    A DT 8  ? ? C7    A DT 8  ? ? 118.67 122.90 -4.23 0.60 N 
5   1  "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 110.76 108.30 2.46  0.30 N 
6   1  C4    A DA 10 ? ? C5    A DA 10 ? ? C6    A DA 10 ? ? 113.93 117.00 -3.07 0.50 N 
7   1  N1    A DA 10 ? ? C6    A DA 10 ? ? N6    A DA 10 ? ? 114.89 118.60 -3.71 0.60 N 
8   1  "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1    A DT 11 ? ? 111.15 108.30 2.85  0.30 N 
9   1  "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1    B DT 15 ? ? 110.17 108.30 1.87  0.30 N 
10  1  C6    B DT 15 ? ? C5    B DT 15 ? ? C7    B DT 15 ? ? 118.79 122.90 -4.11 0.60 N 
11  1  C4    B DA 17 ? ? C5    B DA 17 ? ? C6    B DA 17 ? ? 113.82 117.00 -3.18 0.50 N 
12  1  "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 110.90 108.30 2.60  0.30 N 
13  1  "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 113.34 108.30 5.04  0.30 N 
14  1  N3    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 117.60 121.90 -4.30 0.70 N 
15  1  "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1    B DT 22 ? ? 111.00 108.30 2.70  0.30 N 
16  1  C6    B DT 22 ? ? C5    B DT 22 ? ? C7    B DT 22 ? ? 118.21 122.90 -4.69 0.60 N 
17  1  "C3'" B DA 23 ? ? "C2'" B DA 23 ? ? "C1'" B DA 23 ? ? 97.51  102.40 -4.89 0.80 N 
18  1  "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9    B DA 23 ? ? 111.65 108.30 3.35  0.30 N 
19  2  "O4'" A DA 3  ? ? "C1'" A DA 3  ? ? N9    A DA 3  ? ? 111.21 108.30 2.91  0.30 N 
20  2  C4    A DA 3  ? ? C5    A DA 3  ? ? C6    A DA 3  ? ? 113.93 117.00 -3.07 0.50 N 
21  2  N1    A DA 3  ? ? C6    A DA 3  ? ? N6    A DA 3  ? ? 112.90 118.60 -5.70 0.60 N 
22  2  "O4'" A DG 4  ? ? "C1'" A DG 4  ? ? N9    A DG 4  ? ? 111.14 108.30 2.84  0.30 N 
23  2  "O4'" A DC 5  ? ? "C1'" A DC 5  ? ? N1    A DC 5  ? ? 111.08 108.30 2.78  0.30 N 
24  2  "O4'" A DG 6  ? ? "C1'" A DG 6  ? ? N9    A DG 6  ? ? 110.70 108.30 2.40  0.30 N 
25  2  "O4'" A DG 7  ? ? "C1'" A DG 7  ? ? N9    A DG 7  ? ? 110.73 108.30 2.43  0.30 N 
26  2  "O4'" A DT 8  ? ? "C1'" A DT 8  ? ? N1    A DT 8  ? ? 111.87 108.30 3.57  0.30 N 
27  2  C6    A DT 8  ? ? C5    A DT 8  ? ? C7    A DT 8  ? ? 119.30 122.90 -3.60 0.60 N 
28  2  "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 111.11 108.30 2.81  0.30 N 
29  2  "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1    A DT 11 ? ? 111.25 108.30 2.95  0.30 N 
30  2  "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1    B DT 15 ? ? 110.70 108.30 2.40  0.30 N 
31  2  C6    B DT 15 ? ? C5    B DT 15 ? ? C7    B DT 15 ? ? 118.53 122.90 -4.37 0.60 N 
32  2  "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9    B DA 17 ? ? 110.72 108.30 2.42  0.30 N 
33  2  "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 113.40 108.30 5.10  0.30 N 
34  2  "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 112.69 108.30 4.39  0.30 N 
35  2  N3    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 117.40 121.90 -4.50 0.70 N 
36  2  "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1    B DT 22 ? ? 111.81 108.30 3.51  0.30 N 
37  2  C6    B DT 22 ? ? C5    B DT 22 ? ? C7    B DT 22 ? ? 118.30 122.90 -4.60 0.60 N 
38  2  "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9    B DA 23 ? ? 113.97 108.30 5.67  0.30 N 
39  2  N1    B DA 23 ? ? C6    B DA 23 ? ? N6    B DA 23 ? ? 114.93 118.60 -3.67 0.60 N 
40  2  "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9    B DG 24 ? ? 110.31 108.30 2.01  0.30 N 
41  3  "O4'" A DA 3  ? ? "C1'" A DA 3  ? ? N9    A DA 3  ? ? 110.26 108.30 1.96  0.30 N 
42  3  C4    A DA 3  ? ? C5    A DA 3  ? ? C6    A DA 3  ? ? 113.62 117.00 -3.38 0.50 N 
43  3  N1    A DA 3  ? ? C6    A DA 3  ? ? N6    A DA 3  ? ? 114.53 118.60 -4.07 0.60 N 
44  3  "O4'" A DT 8  ? ? "C1'" A DT 8  ? ? N1    A DT 8  ? ? 110.88 108.30 2.58  0.30 N 
45  3  C6    A DT 8  ? ? C5    A DT 8  ? ? C7    A DT 8  ? ? 118.15 122.90 -4.75 0.60 N 
46  3  "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 110.72 108.30 2.42  0.30 N 
47  3  N1    A DA 10 ? ? C6    A DA 10 ? ? N6    A DA 10 ? ? 114.84 118.60 -3.76 0.60 N 
48  3  "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1    A DT 11 ? ? 111.03 108.30 2.73  0.30 N 
49  3  C6    A DT 11 ? ? C5    A DT 11 ? ? C7    A DT 11 ? ? 118.63 122.90 -4.27 0.60 N 
50  3  C5    B DA 14 ? ? C6    B DA 14 ? ? N1    B DA 14 ? ? 120.73 117.70 3.03  0.50 N 
51  3  C6    B DT 15 ? ? C5    B DT 15 ? ? C7    B DT 15 ? ? 118.07 122.90 -4.83 0.60 N 
52  3  "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9    B DG 16 ? ? 110.42 108.30 2.12  0.30 N 
53  3  C4    B DA 17 ? ? C5    B DA 17 ? ? C6    B DA 17 ? ? 114.00 117.00 -3.00 0.50 N 
54  3  N1    B DA 17 ? ? C6    B DA 17 ? ? N6    B DA 17 ? ? 114.61 118.60 -3.99 0.60 N 
55  3  "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 112.33 108.30 4.03  0.30 N 
56  3  "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 112.02 108.30 3.72  0.30 N 
57  3  N1    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 122.76 118.90 3.86  0.60 N 
58  3  N3    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 117.18 121.90 -4.72 0.70 N 
59  3  "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1    B DT 22 ? ? 111.55 108.30 3.25  0.30 N 
60  3  C6    B DT 22 ? ? C5    B DT 22 ? ? C7    B DT 22 ? ? 117.87 122.90 -5.03 0.60 N 
61  3  C4    B DA 23 ? ? C5    B DA 23 ? ? C6    B DA 23 ? ? 113.91 117.00 -3.09 0.50 N 
62  4  "O4'" A DG 6  ? ? "C1'" A DG 6  ? ? N9    A DG 6  ? ? 112.24 108.30 3.94  0.30 N 
63  4  "O4'" A DT 8  ? ? "C1'" A DT 8  ? ? N1    A DT 8  ? ? 111.11 108.30 2.81  0.30 N 
64  4  C6    A DT 8  ? ? C5    A DT 8  ? ? C7    A DT 8  ? ? 118.90 122.90 -4.00 0.60 N 
65  4  "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 111.05 108.30 2.75  0.30 N 
66  4  N3    A DC 9  ? ? C2    A DC 9  ? ? O2    A DC 9  ? ? 117.60 121.90 -4.30 0.70 N 
67  4  "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1    A DT 11 ? ? 110.98 108.30 2.68  0.30 N 
68  4  C6    B DT 15 ? ? C5    B DT 15 ? ? C7    B DT 15 ? ? 118.87 122.90 -4.03 0.60 N 
69  4  "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9    B DG 16 ? ? 110.52 108.30 2.22  0.30 N 
70  4  N1    B DA 17 ? ? C6    B DA 17 ? ? N6    B DA 17 ? ? 114.84 118.60 -3.76 0.60 N 
71  4  "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 113.07 108.30 4.77  0.30 N 
72  4  "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 113.49 108.30 5.19  0.30 N 
73  4  N1    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 122.61 118.90 3.71  0.60 N 
74  4  N3    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 116.90 121.90 -5.00 0.70 N 
75  4  "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1    B DT 22 ? ? 113.22 108.30 4.92  0.30 N 
76  4  N1    B DA 23 ? ? C6    B DA 23 ? ? N6    B DA 23 ? ? 114.68 118.60 -3.92 0.60 N 
77  5  "O4'" A DA 3  ? ? "C1'" A DA 3  ? ? N9    A DA 3  ? ? 111.01 108.30 2.71  0.30 N 
78  5  N1    A DA 3  ? ? C6    A DA 3  ? ? N6    A DA 3  ? ? 114.56 118.60 -4.04 0.60 N 
79  5  "O4'" A DG 4  ? ? "C1'" A DG 4  ? ? N9    A DG 4  ? ? 110.84 108.30 2.54  0.30 N 
80  5  "O4'" A DG 6  ? ? "C1'" A DG 6  ? ? N9    A DG 6  ? ? 111.14 108.30 2.84  0.30 N 
81  5  "O4'" A DT 8  ? ? "C1'" A DT 8  ? ? N1    A DT 8  ? ? 110.72 108.30 2.42  0.30 N 
82  5  C6    A DT 8  ? ? C5    A DT 8  ? ? C7    A DT 8  ? ? 118.34 122.90 -4.56 0.60 N 
83  5  "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 111.00 108.30 2.70  0.30 N 
84  5  N3    A DC 9  ? ? C2    A DC 9  ? ? O2    A DC 9  ? ? 117.66 121.90 -4.24 0.70 N 
85  5  N1    A DA 10 ? ? C6    A DA 10 ? ? N6    A DA 10 ? ? 114.65 118.60 -3.95 0.60 N 
86  5  "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1    A DT 11 ? ? 111.26 108.30 2.96  0.30 N 
87  5  C6    A DT 11 ? ? C5    A DT 11 ? ? C7    A DT 11 ? ? 119.22 122.90 -3.68 0.60 N 
88  5  N1    B DA 14 ? ? C6    B DA 14 ? ? N6    B DA 14 ? ? 114.94 118.60 -3.66 0.60 N 
89  5  "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1    B DT 15 ? ? 110.50 108.30 2.20  0.30 N 
90  5  C6    B DT 15 ? ? C5    B DT 15 ? ? C7    B DT 15 ? ? 118.69 122.90 -4.21 0.60 N 
91  5  "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 114.13 108.30 5.83  0.30 N 
92  5  "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 111.76 108.30 3.46  0.30 N 
93  5  N3    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 117.27 121.90 -4.63 0.70 N 
94  5  "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1    B DT 22 ? ? 111.65 108.30 3.35  0.30 N 
95  5  C6    B DT 22 ? ? C5    B DT 22 ? ? C7    B DT 22 ? ? 118.73 122.90 -4.17 0.60 N 
96  5  "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9    B DA 23 ? ? 113.20 108.30 4.90  0.30 N 
97  6  "O4'" A DA 3  ? ? "C1'" A DA 3  ? ? N9    A DA 3  ? ? 110.21 108.30 1.91  0.30 N 
98  6  N1    A DA 3  ? ? C6    A DA 3  ? ? N6    A DA 3  ? ? 114.97 118.60 -3.63 0.60 N 
99  6  "O4'" A DG 7  ? ? "C1'" A DG 7  ? ? N9    A DG 7  ? ? 110.19 108.30 1.89  0.30 N 
100 6  N1    A DG 7  ? ? C6    A DG 7  ? ? O6    A DG 7  ? ? 116.29 119.90 -3.61 0.60 N 
101 6  "O4'" A DT 8  ? ? "C1'" A DT 8  ? ? N1    A DT 8  ? ? 110.40 108.30 2.10  0.30 N 
102 6  C6    A DT 8  ? ? C5    A DT 8  ? ? C7    A DT 8  ? ? 118.68 122.90 -4.22 0.60 N 
103 6  "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 110.92 108.30 2.62  0.30 N 
104 6  N1    A DA 10 ? ? C6    A DA 10 ? ? N6    A DA 10 ? ? 114.47 118.60 -4.13 0.60 N 
105 6  "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1    A DT 11 ? ? 111.36 108.30 3.06  0.30 N 
106 6  C6    A DT 11 ? ? C5    A DT 11 ? ? C7    A DT 11 ? ? 119.29 122.90 -3.61 0.60 N 
107 6  "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1    B DT 15 ? ? 110.42 108.30 2.12  0.30 N 
108 6  C6    B DT 15 ? ? C5    B DT 15 ? ? C7    B DT 15 ? ? 118.49 122.90 -4.41 0.60 N 
109 6  N1    B DA 17 ? ? C6    B DA 17 ? ? N6    B DA 17 ? ? 114.69 118.60 -3.91 0.60 N 
110 6  "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 112.48 108.30 4.18  0.30 N 
111 6  N1    B DC 18 ? ? C2    B DC 18 ? ? O2    B DC 18 ? ? 122.80 118.90 3.90  0.60 N 
112 6  N3    B DC 18 ? ? C2    B DC 18 ? ? O2    B DC 18 ? ? 116.72 121.90 -5.18 0.70 N 
113 6  "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 111.20 108.30 2.90  0.30 N 
114 6  N3    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 117.24 121.90 -4.66 0.70 N 
115 6  "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1    B DT 22 ? ? 110.82 108.30 2.52  0.30 N 
116 6  C6    B DT 22 ? ? C5    B DT 22 ? ? C7    B DT 22 ? ? 118.45 122.90 -4.45 0.60 N 
117 6  "C3'" B DA 23 ? ? "C2'" B DA 23 ? ? "C1'" B DA 23 ? ? 97.28  102.40 -5.12 0.80 N 
118 6  "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9    B DA 23 ? ? 111.55 108.30 3.25  0.30 N 
119 6  "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9    B DG 24 ? ? 110.61 108.30 2.31  0.30 N 
120 6  N1    B DG 24 ? ? C6    B DG 24 ? ? O6    B DG 24 ? ? 116.15 119.90 -3.75 0.60 N 
121 7  "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 110.94 108.30 2.64  0.30 N 
122 7  N1    A DA 3  ? ? C6    A DA 3  ? ? N6    A DA 3  ? ? 114.78 118.60 -3.82 0.60 N 
123 7  "O4'" A DG 6  ? ? "C1'" A DG 6  ? ? N9    A DG 6  ? ? 111.17 108.30 2.87  0.30 N 
124 7  N9    A DG 6  ? ? C4    A DG 6  ? ? C5    A DG 6  ? ? 107.82 105.40 2.42  0.40 N 
125 7  N3    A DG 6  ? ? C2    A DG 6  ? ? N2    A DG 6  ? ? 113.87 119.90 -6.03 0.70 N 
126 7  "O4'" A DG 7  ? ? "C1'" A DG 7  ? ? N9    A DG 7  ? ? 110.36 108.30 2.06  0.30 N 
127 7  N1    A DG 7  ? ? C6    A DG 7  ? ? O6    A DG 7  ? ? 116.27 119.90 -3.63 0.60 N 
128 7  "O4'" A DT 8  ? ? "C1'" A DT 8  ? ? N1    A DT 8  ? ? 110.50 108.30 2.20  0.30 N 
129 7  C6    A DT 8  ? ? C5    A DT 8  ? ? C7    A DT 8  ? ? 119.23 122.90 -3.67 0.60 N 
130 7  "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 110.60 108.30 2.30  0.30 N 
131 7  N1    A DA 10 ? ? C6    A DA 10 ? ? N6    A DA 10 ? ? 114.65 118.60 -3.95 0.60 N 
132 7  "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1    A DT 11 ? ? 110.37 108.30 2.07  0.30 N 
133 7  N1    B DA 14 ? ? C6    B DA 14 ? ? N6    B DA 14 ? ? 114.96 118.60 -3.64 0.60 N 
134 7  C6    B DT 15 ? ? C5    B DT 15 ? ? C7    B DT 15 ? ? 118.88 122.90 -4.02 0.60 N 
135 7  "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9    B DG 16 ? ? 110.96 108.30 2.66  0.30 N 
136 7  C4    B DA 17 ? ? C5    B DA 17 ? ? C6    B DA 17 ? ? 113.97 117.00 -3.03 0.50 N 
137 7  N1    B DA 17 ? ? C6    B DA 17 ? ? N6    B DA 17 ? ? 114.95 118.60 -3.65 0.60 N 
138 7  "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 112.89 108.30 4.59  0.30 N 
139 7  "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 112.92 108.30 4.62  0.30 N 
140 7  N3    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 117.16 121.90 -4.74 0.70 N 
141 7  "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1    B DT 22 ? ? 112.45 108.30 4.15  0.30 N 
142 7  "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9    B DA 23 ? ? 110.46 108.30 2.16  0.30 N 
143 7  N1    B DA 23 ? ? C6    B DA 23 ? ? N6    B DA 23 ? ? 114.76 118.60 -3.84 0.60 N 
144 8  "O4'" A DA 3  ? ? "C1'" A DA 3  ? ? N9    A DA 3  ? ? 110.83 108.30 2.53  0.30 N 
145 8  C4    A DA 3  ? ? C5    A DA 3  ? ? C6    A DA 3  ? ? 113.86 117.00 -3.14 0.50 N 
146 8  C5    A DA 3  ? ? C6    A DA 3  ? ? N1    A DA 3  ? ? 121.04 117.70 3.34  0.50 N 
147 8  N1    A DA 3  ? ? C6    A DA 3  ? ? N6    A DA 3  ? ? 114.60 118.60 -4.00 0.60 N 
148 8  N1    A DG 7  ? ? C6    A DG 7  ? ? O6    A DG 7  ? ? 116.25 119.90 -3.65 0.60 N 
149 8  "O4'" A DT 8  ? ? "C1'" A DT 8  ? ? N1    A DT 8  ? ? 110.56 108.30 2.26  0.30 N 
150 8  C6    A DT 8  ? ? C5    A DT 8  ? ? C7    A DT 8  ? ? 117.71 122.90 -5.19 0.60 N 
151 8  "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 110.63 108.30 2.33  0.30 N 
152 8  N3    A DC 9  ? ? C2    A DC 9  ? ? O2    A DC 9  ? ? 117.69 121.90 -4.21 0.70 N 
153 8  C5    A DA 10 ? ? C6    A DA 10 ? ? N1    A DA 10 ? ? 120.80 117.70 3.10  0.50 N 
154 8  N1    A DA 10 ? ? C6    A DA 10 ? ? N6    A DA 10 ? ? 114.36 118.60 -4.24 0.60 N 
155 8  "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1    A DT 11 ? ? 110.57 108.30 2.27  0.30 N 
156 8  C6    A DT 11 ? ? C5    A DT 11 ? ? C7    A DT 11 ? ? 118.75 122.90 -4.15 0.60 N 
157 8  N1    B DA 14 ? ? C6    B DA 14 ? ? N6    B DA 14 ? ? 114.75 118.60 -3.85 0.60 N 
158 8  C6    B DT 15 ? ? C5    B DT 15 ? ? C7    B DT 15 ? ? 118.03 122.90 -4.87 0.60 N 
159 8  C4    B DA 17 ? ? C5    B DA 17 ? ? C6    B DA 17 ? ? 113.81 117.00 -3.19 0.50 N 
160 8  C5    B DA 17 ? ? C6    B DA 17 ? ? N1    B DA 17 ? ? 121.02 117.70 3.32  0.50 N 
161 8  N1    B DA 17 ? ? C6    B DA 17 ? ? N6    B DA 17 ? ? 114.45 118.60 -4.15 0.60 N 
162 8  "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 112.85 108.30 4.55  0.30 N 
163 8  "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 112.61 108.30 4.31  0.30 N 
164 8  N1    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 122.81 118.90 3.91  0.60 N 
165 8  N3    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 116.98 121.90 -4.92 0.70 N 
166 8  "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1    B DT 22 ? ? 112.66 108.30 4.36  0.30 N 
167 8  "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9    B DA 23 ? ? 112.65 108.30 4.35  0.30 N 
168 8  C4    B DA 23 ? ? C5    B DA 23 ? ? C6    B DA 23 ? ? 113.85 117.00 -3.15 0.50 N 
169 8  C5    B DA 23 ? ? C6    B DA 23 ? ? N1    B DA 23 ? ? 120.78 117.70 3.08  0.50 N 
170 8  N1    B DA 23 ? ? C6    B DA 23 ? ? N6    B DA 23 ? ? 114.98 118.60 -3.62 0.60 N 
171 9  "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 110.12 108.30 1.82  0.30 N 
172 9  "O4'" A DA 3  ? ? "C1'" A DA 3  ? ? N9    A DA 3  ? ? 110.59 108.30 2.29  0.30 N 
173 9  N1    A DA 3  ? ? C6    A DA 3  ? ? N6    A DA 3  ? ? 114.33 118.60 -4.27 0.60 N 
174 9  "O4'" A DG 4  ? ? "C1'" A DG 4  ? ? N9    A DG 4  ? ? 110.36 108.30 2.06  0.30 N 
175 9  "O4'" A DG 6  ? ? "C1'" A DG 6  ? ? N9    A DG 6  ? ? 110.11 108.30 1.81  0.30 N 
176 9  N1    A DG 6  ? ? C6    A DG 6  ? ? O6    A DG 6  ? ? 116.13 119.90 -3.77 0.60 N 
177 9  "O4'" A DG 7  ? ? "C1'" A DG 7  ? ? N9    A DG 7  ? ? 110.53 108.30 2.23  0.30 N 
178 9  N1    A DG 7  ? ? C6    A DG 7  ? ? O6    A DG 7  ? ? 116.21 119.90 -3.69 0.60 N 
179 9  "O4'" A DT 8  ? ? "C1'" A DT 8  ? ? N1    A DT 8  ? ? 110.74 108.30 2.44  0.30 N 
180 9  C6    A DT 8  ? ? C5    A DT 8  ? ? C7    A DT 8  ? ? 119.25 122.90 -3.65 0.60 N 
181 9  "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 110.36 108.30 2.06  0.30 N 
182 9  "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1    A DT 11 ? ? 111.00 108.30 2.70  0.30 N 
183 9  C6    B DT 15 ? ? C5    B DT 15 ? ? C7    B DT 15 ? ? 118.52 122.90 -4.38 0.60 N 
184 9  "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9    B DA 17 ? ? 110.15 108.30 1.85  0.30 N 
185 9  "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 113.24 108.30 4.94  0.30 N 
186 9  "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 113.84 108.30 5.54  0.30 N 
187 9  N1    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 122.52 118.90 3.62  0.60 N 
188 9  N3    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 116.94 121.90 -4.96 0.70 N 
189 9  "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1    B DT 22 ? ? 113.28 108.30 4.98  0.30 N 
190 9  "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9    B DA 23 ? ? 112.80 108.30 4.50  0.30 N 
191 9  "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9    B DG 24 ? ? 110.60 108.30 2.30  0.30 N 
192 9  N1    B DG 24 ? ? C6    B DG 24 ? ? O6    B DG 24 ? ? 116.06 119.90 -3.84 0.60 N 
193 10 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 110.17 108.30 1.87  0.30 N 
194 10 "O4'" A DA 3  ? ? "C1'" A DA 3  ? ? N9    A DA 3  ? ? 110.29 108.30 1.99  0.30 N 
195 10 N1    A DA 3  ? ? C6    A DA 3  ? ? N6    A DA 3  ? ? 114.29 118.60 -4.31 0.60 N 
196 10 N1    A DG 6  ? ? C6    A DG 6  ? ? O6    A DG 6  ? ? 116.15 119.90 -3.75 0.60 N 
197 10 "O4'" A DG 7  ? ? "C1'" A DG 7  ? ? N9    A DG 7  ? ? 110.48 108.30 2.18  0.30 N 
198 10 "C3'" A DG 7  ? ? "O3'" A DG 7  ? ? P     A DT 8  ? ? 126.90 119.70 7.20  1.20 Y 
199 10 "O4'" A DT 8  ? ? "C1'" A DT 8  ? ? N1    A DT 8  ? ? 110.33 108.30 2.03  0.30 N 
200 10 "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 110.39 108.30 2.09  0.30 N 
201 10 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1    A DT 11 ? ? 111.06 108.30 2.76  0.30 N 
202 10 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9    B DG 13 ? ? 110.37 108.30 2.07  0.30 N 
203 10 C6    B DT 15 ? ? C5    B DT 15 ? ? C7    B DT 15 ? ? 118.94 122.90 -3.96 0.60 N 
204 10 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9    B DG 16 ? ? 110.56 108.30 2.26  0.30 N 
205 10 N1    B DA 17 ? ? C6    B DA 17 ? ? N6    B DA 17 ? ? 114.80 118.60 -3.80 0.60 N 
206 10 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 113.30 108.30 5.00  0.30 N 
207 10 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 114.64 108.30 6.34  0.30 N 
208 10 N1    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 122.54 118.90 3.64  0.60 N 
209 10 N3    B DC 21 ? ? C2    B DC 21 ? ? O2    B DC 21 ? ? 117.08 121.90 -4.82 0.70 N 
210 10 "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1    B DT 22 ? ? 112.65 108.30 4.35  0.30 N 
211 10 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9    B DA 23 ? ? 112.66 108.30 4.36  0.30 N 
212 10 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9    B DG 24 ? ? 110.76 108.30 2.46  0.30 N 
213 10 N1    B DG 24 ? ? C6    B DG 24 ? ? O6    B DG 24 ? ? 116.24 119.90 -3.66 0.60 N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1  1  DG B 20 ? ? 0.071 'SIDE CHAIN' 
2  2  DG A 6  ? ? 0.065 'SIDE CHAIN' 
3  2  DG B 20 ? ? 0.068 'SIDE CHAIN' 
4  2  DA B 23 ? ? 0.052 'SIDE CHAIN' 
5  3  DG B 20 ? ? 0.071 'SIDE CHAIN' 
6  3  DG B 24 ? ? 0.048 'SIDE CHAIN' 
7  4  DA A 3  ? ? 0.099 'SIDE CHAIN' 
8  4  DG B 20 ? ? 0.054 'SIDE CHAIN' 
9  5  DG B 20 ? ? 0.064 'SIDE CHAIN' 
10 5  DA B 23 ? ? 0.053 'SIDE CHAIN' 
11 6  DG B 20 ? ? 0.063 'SIDE CHAIN' 
12 7  DC A 1  ? ? 0.059 'SIDE CHAIN' 
13 7  DA A 3  ? ? 0.075 'SIDE CHAIN' 
14 7  DG A 7  ? ? 0.066 'SIDE CHAIN' 
15 7  DG B 20 ? ? 0.054 'SIDE CHAIN' 
16 8  DC A 1  ? ? 0.059 'SIDE CHAIN' 
17 8  DG B 20 ? ? 0.052 'SIDE CHAIN' 
18 8  DA B 23 ? ? 0.053 'SIDE CHAIN' 
19 9  DA B 23 ? ? 0.054 'SIDE CHAIN' 
20 10 DA A 3  ? ? 0.059 'SIDE CHAIN' 
21 10 DG B 20 ? ? 0.061 'SIDE CHAIN' 
22 10 DA B 23 ? ? 0.057 'SIDE CHAIN' 
# 
_pdbx_nmr_ensemble.average_constraint_violations_per_residue     ? 
_pdbx_nmr_ensemble.average_constraints_per_residue               ? 
_pdbx_nmr_ensemble.average_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.conformer_selection_criteria                  'structures with the lowest energy' 
_pdbx_nmr_ensemble.conformers_calculated_total_number            10 
_pdbx_nmr_ensemble.conformers_submitted_total_number             10 
_pdbx_nmr_ensemble.distance_constraint_violation_method          ? 
_pdbx_nmr_ensemble.entry_id                                      2N9F 
_pdbx_nmr_ensemble.maximum_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method     ? 
# 
_pdbx_nmr_representative.conformer_id         1 
_pdbx_nmr_representative.entry_id             2N9F 
_pdbx_nmr_representative.selection_criteria   'lowest energy' 
# 
_pdbx_nmr_sample_details.contents         
;1 mM DNA (5'-D(*CP*TP*AP*GP*CP*GP*GP*TP*CP*AP*TP*C)-3'), 1 mM DNA (5'-D(*GP*AP*TP*GP*AP*CP*(GL6)P*GP*CP*TP*AP*G)-3'), 90% H2O/10% D2O
;
_pdbx_nmr_sample_details.solution_id      1 
_pdbx_nmr_sample_details.solvent_system   '90% H2O/10% D2O' 
# 
loop_
_pdbx_nmr_exptl_sample.component 
_pdbx_nmr_exptl_sample.concentration 
_pdbx_nmr_exptl_sample.concentration_range 
_pdbx_nmr_exptl_sample.concentration_units 
_pdbx_nmr_exptl_sample.isotopic_labeling 
_pdbx_nmr_exptl_sample.solution_id 
;DNA (5'-D(*CP*TP*AP*GP*CP*GP*GP*TP*CP*AP*TP*C)-3')-1
;
1 ? mM ? 1 
;DNA (5'-D(*GP*AP*TP*GP*AP*CP*(GL6)P*GP*CP*TP*AP*G)-3')-2
;
1 ? mM ? 1 
# 
_pdbx_nmr_exptl_sample_conditions.conditions_id       1 
_pdbx_nmr_exptl_sample_conditions.ionic_strength      'Potassium phosphate' 
_pdbx_nmr_exptl_sample_conditions.pH                  7 
_pdbx_nmr_exptl_sample_conditions.pressure            ambient 
_pdbx_nmr_exptl_sample_conditions.pressure_units      ? 
_pdbx_nmr_exptl_sample_conditions.temperature         279.6 
_pdbx_nmr_exptl_sample_conditions.temperature_units   K 
# 
loop_
_pdbx_nmr_exptl.conditions_id 
_pdbx_nmr_exptl.experiment_id 
_pdbx_nmr_exptl.solution_id 
_pdbx_nmr_exptl.type 
1 1 1 '2D 1H-1H NOESY' 
1 2 1 '2D 1H-1H NOESY' 
1 3 1 '2D 1H-1H TOCSY' 
1 4 1 '2D 1H-1H COSY'  
# 
_pdbx_nmr_details.entry_id   2N9F 
_pdbx_nmr_details.text       'The structure was determined using NOE data' 
# 
_pdbx_nmr_constraints.disulfide_bond_constraints_total_count        ? 
_pdbx_nmr_constraints.entry_id                                      2N9F 
_pdbx_nmr_constraints.hydrogen_bond_constraints_total_count         ? 
_pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count        ? 
_pdbx_nmr_constraints.NA_beta-angle_constraints_total_count         ? 
_pdbx_nmr_constraints.NA_chi-angle_constraints_total_count          ? 
_pdbx_nmr_constraints.NA_delta-angle_constraints_total_count        ? 
_pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count      ? 
_pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count        ? 
_pdbx_nmr_constraints.NA_other-angle_constraints_total_count        ? 
_pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count       ? 
_pdbx_nmr_constraints.NOE_constraints_total                         265 
_pdbx_nmr_constraints.NOE_interentity_total_count                   ? 
_pdbx_nmr_constraints.NOE_interproton_distance_evaluation           ? 
_pdbx_nmr_constraints.NOE_intraresidue_total_count                  131 
_pdbx_nmr_constraints.NOE_long_range_total_count                    16 
_pdbx_nmr_constraints.NOE_medium_range_total_count                  235 
_pdbx_nmr_constraints.NOE_motional_averaging_correction             ? 
_pdbx_nmr_constraints.NOE_pseudoatom_corrections                    ? 
_pdbx_nmr_constraints.NOE_sequential_total_count                    104 
_pdbx_nmr_constraints.protein_chi_angle_constraints_total_count     ? 
_pdbx_nmr_constraints.protein_other_angle_constraints_total_count   ? 
_pdbx_nmr_constraints.protein_phi_angle_constraints_total_count     ? 
_pdbx_nmr_constraints.protein_psi_angle_constraints_total_count     ? 
# 
_pdbx_nmr_refine.entry_id           2N9F 
_pdbx_nmr_refine.method             'molecular dynamics' 
_pdbx_nmr_refine.details            ? 
_pdbx_nmr_refine.software_ordinal   1 
# 
loop_
_pdbx_nmr_software.authors 
_pdbx_nmr_software.classification 
_pdbx_nmr_software.name 
_pdbx_nmr_software.version 
_pdbx_nmr_software.ordinal 
'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' refinement                  Amber ? 1 
'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' 'chemical shift assignment' Amber ? 2 
'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' processing                  Amber ? 3 
Goddard                                                                 refinement                  Amber ? 4 
Goddard                                                                 'chemical shift assignment' Amber ? 5 
Goddard                                                                 processing                  Amber ? 6 
'Bruker Biospin'                                                        refinement                  Amber ? 7 
'Bruker Biospin'                                                        'chemical shift assignment' Amber ? 8 
'Bruker Biospin'                                                        processing                  Amber ? 9 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
4JA P      P N N 1   
4JA O2     O N N 2   
4JA O3     O N N 3   
4JA O4     O N N 4   
4JA O5     O N N 5   
4JA C1     C N R 6   
4JA C2     C N R 7   
4JA C3     C N S 8   
4JA C4     C N S 9   
4JA C5     C N R 10  
4JA C6     C N N 11  
4JA OP1    O N N 12  
4JA OP2    O N N 13  
4JA "O5'"  O N N 14  
4JA "C5'"  C N N 15  
4JA "C3'"  C N S 16  
4JA "C2'"  C N N 17  
4JA O1     O N N 18  
4JA "O3'"  O N N 19  
4JA HO2    H N N 20  
4JA HO3    H N N 21  
4JA HO4    H N N 22  
4JA H1     H N N 23  
4JA H2     H N N 24  
4JA H3     H N N 25  
4JA H4     H N N 26  
4JA H5     H N N 27  
4JA H61    H N N 28  
4JA H62    H N N 29  
4JA H63    H N N 30  
4JA HOP2   H N N 31  
4JA "H5''" H N N 32  
4JA "H5'"  H N N 33  
4JA "H3'"  H N N 34  
4JA "H2''" H N N 35  
4JA "H2'"  H N N 36  
4JA "HO3'" H N N 37  
4JA OP3    O N N 38  
4JA HOP3   H N N 39  
DA  OP3    O N N 40  
DA  P      P N N 41  
DA  OP1    O N N 42  
DA  OP2    O N N 43  
DA  "O5'"  O N N 44  
DA  "C5'"  C N N 45  
DA  "C4'"  C N R 46  
DA  "O4'"  O N N 47  
DA  "C3'"  C N S 48  
DA  "O3'"  O N N 49  
DA  "C2'"  C N N 50  
DA  "C1'"  C N R 51  
DA  N9     N Y N 52  
DA  C8     C Y N 53  
DA  N7     N Y N 54  
DA  C5     C Y N 55  
DA  C6     C Y N 56  
DA  N6     N N N 57  
DA  N1     N Y N 58  
DA  C2     C Y N 59  
DA  N3     N Y N 60  
DA  C4     C Y N 61  
DA  HOP3   H N N 62  
DA  HOP2   H N N 63  
DA  "H5'"  H N N 64  
DA  "H5''" H N N 65  
DA  "H4'"  H N N 66  
DA  "H3'"  H N N 67  
DA  "HO3'" H N N 68  
DA  "H2'"  H N N 69  
DA  "H2''" H N N 70  
DA  "H1'"  H N N 71  
DA  H8     H N N 72  
DA  H61    H N N 73  
DA  H62    H N N 74  
DA  H2     H N N 75  
DC  OP3    O N N 76  
DC  P      P N N 77  
DC  OP1    O N N 78  
DC  OP2    O N N 79  
DC  "O5'"  O N N 80  
DC  "C5'"  C N N 81  
DC  "C4'"  C N R 82  
DC  "O4'"  O N N 83  
DC  "C3'"  C N S 84  
DC  "O3'"  O N N 85  
DC  "C2'"  C N N 86  
DC  "C1'"  C N R 87  
DC  N1     N N N 88  
DC  C2     C N N 89  
DC  O2     O N N 90  
DC  N3     N N N 91  
DC  C4     C N N 92  
DC  N4     N N N 93  
DC  C5     C N N 94  
DC  C6     C N N 95  
DC  HOP3   H N N 96  
DC  HOP2   H N N 97  
DC  "H5'"  H N N 98  
DC  "H5''" H N N 99  
DC  "H4'"  H N N 100 
DC  "H3'"  H N N 101 
DC  "HO3'" H N N 102 
DC  "H2'"  H N N 103 
DC  "H2''" H N N 104 
DC  "H1'"  H N N 105 
DC  H41    H N N 106 
DC  H42    H N N 107 
DC  H5     H N N 108 
DC  H6     H N N 109 
DG  OP3    O N N 110 
DG  P      P N N 111 
DG  OP1    O N N 112 
DG  OP2    O N N 113 
DG  "O5'"  O N N 114 
DG  "C5'"  C N N 115 
DG  "C4'"  C N R 116 
DG  "O4'"  O N N 117 
DG  "C3'"  C N S 118 
DG  "O3'"  O N N 119 
DG  "C2'"  C N N 120 
DG  "C1'"  C N R 121 
DG  N9     N Y N 122 
DG  C8     C Y N 123 
DG  N7     N Y N 124 
DG  C5     C Y N 125 
DG  C6     C N N 126 
DG  O6     O N N 127 
DG  N1     N N N 128 
DG  C2     C N N 129 
DG  N2     N N N 130 
DG  N3     N N N 131 
DG  C4     C Y N 132 
DG  HOP3   H N N 133 
DG  HOP2   H N N 134 
DG  "H5'"  H N N 135 
DG  "H5''" H N N 136 
DG  "H4'"  H N N 137 
DG  "H3'"  H N N 138 
DG  "HO3'" H N N 139 
DG  "H2'"  H N N 140 
DG  "H2''" H N N 141 
DG  "H1'"  H N N 142 
DG  H8     H N N 143 
DG  H1     H N N 144 
DG  H21    H N N 145 
DG  H22    H N N 146 
DT  OP3    O N N 147 
DT  P      P N N 148 
DT  OP1    O N N 149 
DT  OP2    O N N 150 
DT  "O5'"  O N N 151 
DT  "C5'"  C N N 152 
DT  "C4'"  C N R 153 
DT  "O4'"  O N N 154 
DT  "C3'"  C N S 155 
DT  "O3'"  O N N 156 
DT  "C2'"  C N N 157 
DT  "C1'"  C N R 158 
DT  N1     N N N 159 
DT  C2     C N N 160 
DT  O2     O N N 161 
DT  N3     N N N 162 
DT  C4     C N N 163 
DT  O4     O N N 164 
DT  C5     C N N 165 
DT  C7     C N N 166 
DT  C6     C N N 167 
DT  HOP3   H N N 168 
DT  HOP2   H N N 169 
DT  "H5'"  H N N 170 
DT  "H5''" H N N 171 
DT  "H4'"  H N N 172 
DT  "H3'"  H N N 173 
DT  "HO3'" H N N 174 
DT  "H2'"  H N N 175 
DT  "H2''" H N N 176 
DT  "H1'"  H N N 177 
DT  H3     H N N 178 
DT  H71    H N N 179 
DT  H72    H N N 180 
DT  H73    H N N 181 
DT  H6     H N N 182 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4JA OP2   P      sing N N 1   
4JA C6    C5     sing N N 2   
4JA P     "O5'"  sing N N 3   
4JA P     OP1    doub N N 4   
4JA "O5'" "C5'"  sing N N 5   
4JA C5    O5     sing N N 6   
4JA C5    C4     sing N N 7   
4JA O5    C1     sing N N 8   
4JA "C5'" "C3'"  sing N N 9   
4JA "C3'" "C2'"  sing N N 10  
4JA "C3'" "O3'"  sing N N 11  
4JA "C2'" O1     sing N N 12  
4JA O4    C4     sing N N 13  
4JA C4    C3     sing N N 14  
4JA C1    O1     sing N N 15  
4JA C1    C2     sing N N 16  
4JA C3    C2     sing N N 17  
4JA C3    O3     sing N N 18  
4JA C2    O2     sing N N 19  
4JA O2    HO2    sing N N 20  
4JA O3    HO3    sing N N 21  
4JA O4    HO4    sing N N 22  
4JA C1    H1     sing N N 23  
4JA C2    H2     sing N N 24  
4JA C3    H3     sing N N 25  
4JA C4    H4     sing N N 26  
4JA C5    H5     sing N N 27  
4JA C6    H61    sing N N 28  
4JA C6    H62    sing N N 29  
4JA C6    H63    sing N N 30  
4JA OP2   HOP2   sing N N 31  
4JA "C5'" "H5''" sing N N 32  
4JA "C5'" "H5'"  sing N N 33  
4JA "C3'" "H3'"  sing N N 34  
4JA "C2'" "H2''" sing N N 35  
4JA "C2'" "H2'"  sing N N 36  
4JA "O3'" "HO3'" sing N N 37  
4JA P     OP3    sing N N 38  
4JA OP3   HOP3   sing N N 39  
DA  OP3   P      sing N N 40  
DA  OP3   HOP3   sing N N 41  
DA  P     OP1    doub N N 42  
DA  P     OP2    sing N N 43  
DA  P     "O5'"  sing N N 44  
DA  OP2   HOP2   sing N N 45  
DA  "O5'" "C5'"  sing N N 46  
DA  "C5'" "C4'"  sing N N 47  
DA  "C5'" "H5'"  sing N N 48  
DA  "C5'" "H5''" sing N N 49  
DA  "C4'" "O4'"  sing N N 50  
DA  "C4'" "C3'"  sing N N 51  
DA  "C4'" "H4'"  sing N N 52  
DA  "O4'" "C1'"  sing N N 53  
DA  "C3'" "O3'"  sing N N 54  
DA  "C3'" "C2'"  sing N N 55  
DA  "C3'" "H3'"  sing N N 56  
DA  "O3'" "HO3'" sing N N 57  
DA  "C2'" "C1'"  sing N N 58  
DA  "C2'" "H2'"  sing N N 59  
DA  "C2'" "H2''" sing N N 60  
DA  "C1'" N9     sing N N 61  
DA  "C1'" "H1'"  sing N N 62  
DA  N9    C8     sing Y N 63  
DA  N9    C4     sing Y N 64  
DA  C8    N7     doub Y N 65  
DA  C8    H8     sing N N 66  
DA  N7    C5     sing Y N 67  
DA  C5    C6     sing Y N 68  
DA  C5    C4     doub Y N 69  
DA  C6    N6     sing N N 70  
DA  C6    N1     doub Y N 71  
DA  N6    H61    sing N N 72  
DA  N6    H62    sing N N 73  
DA  N1    C2     sing Y N 74  
DA  C2    N3     doub Y N 75  
DA  C2    H2     sing N N 76  
DA  N3    C4     sing Y N 77  
DC  OP3   P      sing N N 78  
DC  OP3   HOP3   sing N N 79  
DC  P     OP1    doub N N 80  
DC  P     OP2    sing N N 81  
DC  P     "O5'"  sing N N 82  
DC  OP2   HOP2   sing N N 83  
DC  "O5'" "C5'"  sing N N 84  
DC  "C5'" "C4'"  sing N N 85  
DC  "C5'" "H5'"  sing N N 86  
DC  "C5'" "H5''" sing N N 87  
DC  "C4'" "O4'"  sing N N 88  
DC  "C4'" "C3'"  sing N N 89  
DC  "C4'" "H4'"  sing N N 90  
DC  "O4'" "C1'"  sing N N 91  
DC  "C3'" "O3'"  sing N N 92  
DC  "C3'" "C2'"  sing N N 93  
DC  "C3'" "H3'"  sing N N 94  
DC  "O3'" "HO3'" sing N N 95  
DC  "C2'" "C1'"  sing N N 96  
DC  "C2'" "H2'"  sing N N 97  
DC  "C2'" "H2''" sing N N 98  
DC  "C1'" N1     sing N N 99  
DC  "C1'" "H1'"  sing N N 100 
DC  N1    C2     sing N N 101 
DC  N1    C6     sing N N 102 
DC  C2    O2     doub N N 103 
DC  C2    N3     sing N N 104 
DC  N3    C4     doub N N 105 
DC  C4    N4     sing N N 106 
DC  C4    C5     sing N N 107 
DC  N4    H41    sing N N 108 
DC  N4    H42    sing N N 109 
DC  C5    C6     doub N N 110 
DC  C5    H5     sing N N 111 
DC  C6    H6     sing N N 112 
DG  OP3   P      sing N N 113 
DG  OP3   HOP3   sing N N 114 
DG  P     OP1    doub N N 115 
DG  P     OP2    sing N N 116 
DG  P     "O5'"  sing N N 117 
DG  OP2   HOP2   sing N N 118 
DG  "O5'" "C5'"  sing N N 119 
DG  "C5'" "C4'"  sing N N 120 
DG  "C5'" "H5'"  sing N N 121 
DG  "C5'" "H5''" sing N N 122 
DG  "C4'" "O4'"  sing N N 123 
DG  "C4'" "C3'"  sing N N 124 
DG  "C4'" "H4'"  sing N N 125 
DG  "O4'" "C1'"  sing N N 126 
DG  "C3'" "O3'"  sing N N 127 
DG  "C3'" "C2'"  sing N N 128 
DG  "C3'" "H3'"  sing N N 129 
DG  "O3'" "HO3'" sing N N 130 
DG  "C2'" "C1'"  sing N N 131 
DG  "C2'" "H2'"  sing N N 132 
DG  "C2'" "H2''" sing N N 133 
DG  "C1'" N9     sing N N 134 
DG  "C1'" "H1'"  sing N N 135 
DG  N9    C8     sing Y N 136 
DG  N9    C4     sing Y N 137 
DG  C8    N7     doub Y N 138 
DG  C8    H8     sing N N 139 
DG  N7    C5     sing Y N 140 
DG  C5    C6     sing N N 141 
DG  C5    C4     doub Y N 142 
DG  C6    O6     doub N N 143 
DG  C6    N1     sing N N 144 
DG  N1    C2     sing N N 145 
DG  N1    H1     sing N N 146 
DG  C2    N2     sing N N 147 
DG  C2    N3     doub N N 148 
DG  N2    H21    sing N N 149 
DG  N2    H22    sing N N 150 
DG  N3    C4     sing N N 151 
DT  OP3   P      sing N N 152 
DT  OP3   HOP3   sing N N 153 
DT  P     OP1    doub N N 154 
DT  P     OP2    sing N N 155 
DT  P     "O5'"  sing N N 156 
DT  OP2   HOP2   sing N N 157 
DT  "O5'" "C5'"  sing N N 158 
DT  "C5'" "C4'"  sing N N 159 
DT  "C5'" "H5'"  sing N N 160 
DT  "C5'" "H5''" sing N N 161 
DT  "C4'" "O4'"  sing N N 162 
DT  "C4'" "C3'"  sing N N 163 
DT  "C4'" "H4'"  sing N N 164 
DT  "O4'" "C1'"  sing N N 165 
DT  "C3'" "O3'"  sing N N 166 
DT  "C3'" "C2'"  sing N N 167 
DT  "C3'" "H3'"  sing N N 168 
DT  "O3'" "HO3'" sing N N 169 
DT  "C2'" "C1'"  sing N N 170 
DT  "C2'" "H2'"  sing N N 171 
DT  "C2'" "H2''" sing N N 172 
DT  "C1'" N1     sing N N 173 
DT  "C1'" "H1'"  sing N N 174 
DT  N1    C2     sing N N 175 
DT  N1    C6     sing N N 176 
DT  C2    O2     doub N N 177 
DT  C2    N3     sing N N 178 
DT  N3    C4     sing N N 179 
DT  N3    H3     sing N N 180 
DT  C4    O4     doub N N 181 
DT  C4    C5     sing N N 182 
DT  C5    C7     sing N N 183 
DT  C5    C6     doub N N 184 
DT  C7    H71    sing N N 185 
DT  C7    H72    sing N N 186 
DT  C7    H73    sing N N 187 
DT  C6    H6     sing N N 188 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
2N9F 'double helix'         
2N9F 'b-form double helix'  
2N9F 'mismatched base pair' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 12 1_555 0.047  -0.124 0.407 -10.590 -8.963  0.638  1  A_DC1:DG24_B  A 1  ? B 24 ? 19 1 
1 A DT 2  1_555 B DA 11 1_555 -0.178 -0.134 0.115 -6.132  -5.126  -3.474 2  A_DT2:DA23_B  A 2  ? B 23 ? 20 1 
1 A DA 3  1_555 B DT 10 1_555 0.006  -0.099 0.240 -5.919  -18.364 0.475  3  A_DA3:DT22_B  A 3  ? B 22 ? 20 1 
1 A DG 4  1_555 B DC 9  1_555 -0.012 -0.169 0.018 -13.888 -19.292 -2.049 4  A_DG4:DC21_B  A 4  ? B 21 ? 19 1 
1 A DC 5  1_555 B DG 8  1_555 -0.026 -0.180 0.313 -2.082  -22.993 -0.138 5  A_DC5:DG20_B  A 5  ? B 20 ? 19 1 
1 A DG 7  1_555 B DC 6  1_555 -0.145 -0.174 0.400 15.409  -14.029 -1.144 6  A_DG7:DC18_B  A 7  ? B 18 ? 19 1 
1 A DT 8  1_555 B DA 5  1_555 -0.032 -0.165 0.103 7.204   -18.268 1.088  7  A_DT8:DA17_B  A 8  ? B 17 ? 20 1 
1 A DC 9  1_555 B DG 4  1_555 0.154  -0.242 0.015 0.159   -19.843 -0.167 8  A_DC9:DG16_B  A 9  ? B 16 ? 19 1 
1 A DA 10 1_555 B DT 3  1_555 -0.035 -0.195 0.145 -0.132  -12.328 2.648  9  A_DA10:DT15_B A 10 ? B 15 ? 20 1 
1 A DT 11 1_555 B DA 2  1_555 -0.122 -0.136 0.263 -9.910  -12.725 -1.032 10 A_DT11:DA14_B A 11 ? B 14 ? 20 1 
1 A DC 12 1_555 B DG 1  1_555 0.274  -0.193 0.143 -15.982 -7.392  0.111  11 A_DC12:DG13_B A 12 ? B 13 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1  1_555 B DG 12 1_555 A DT 2  1_555 B DA 11 1_555 0.246  -0.158 3.180 4.091  0.948  38.772 -0.348 0.113  3.184 1.423  
-6.140 38.990 1  AA_DC1DT2:DA23DG24_BB   A 1  ? B 24 ? A 2  ? B 23 ? 
1 A DT 2  1_555 B DA 11 1_555 A DA 3  1_555 B DT 10 1_555 -0.149 -0.881 3.216 -2.390 7.276  26.985 -3.454 -0.228 2.886 15.206 
4.996  28.032 2  AA_DT2DA3:DT22DA23_BB   A 2  ? B 23 ? A 3  ? B 22 ? 
1 A DA 3  1_555 B DT 10 1_555 A DG 4  1_555 B DC 9  1_555 -0.161 -0.603 3.457 1.378  7.589  32.772 -2.326 0.511  3.232 13.223 
-2.401 33.644 3  AA_DA3DG4:DC21DT22_BB   A 3  ? B 22 ? A 4  ? B 21 ? 
1 A DG 4  1_555 B DC 9  1_555 A DC 5  1_555 B DG 8  1_555 -1.006 -0.613 3.009 -3.647 0.221  29.814 -1.227 1.239  3.102 0.428  
7.054  30.032 4  AA_DG4DC5:DG20DC21_BB   A 4  ? B 21 ? A 5  ? B 20 ? 
1 A DC 5  1_555 B DG 8  1_555 A DG 7  1_555 B DC 6  1_555 -0.870 1.247  6.775 -3.522 7.642  63.370 0.484  0.502  6.905 7.241  
3.337  63.869 5  AA_DC5DG7:DC18DG20_BB   A 5  ? B 20 ? A 7  ? B 18 ? 
1 A DG 7  1_555 B DC 6  1_555 A DT 8  1_555 B DA 5  1_555 -0.033 -1.076 3.410 1.330  1.713  32.846 -2.202 0.293  3.347 3.025  
-2.349 32.916 6  AA_DG7DT8:DA17DC18_BB   A 7  ? B 18 ? A 8  ? B 17 ? 
1 A DT 8  1_555 B DA 5  1_555 A DC 9  1_555 B DG 4  1_555 0.048  -0.552 3.240 1.698  4.277  37.240 -1.407 0.143  3.159 6.666  
-2.646 37.513 7  AA_DT8DC9:DG16DA17_BB   A 8  ? B 17 ? A 9  ? B 16 ? 
1 A DC 9  1_555 B DG 4  1_555 A DA 10 1_555 B DT 3  1_555 -0.050 -0.035 3.204 -1.890 10.899 36.463 -1.413 -0.159 3.068 16.944 
2.938  38.049 8  AA_DC9DA10:DT15DG16_BB  A 9  ? B 16 ? A 10 ? B 15 ? 
1 A DA 10 1_555 B DT 3  1_555 A DT 11 1_555 B DA 2  1_555 -0.093 -0.868 3.448 -0.364 -2.462 31.986 -1.100 0.100  3.504 -4.459 
0.658  32.080 9  AA_DA10DT11:DA14DT15_BB A 10 ? B 15 ? A 11 ? B 14 ? 
1 A DT 11 1_555 B DA 2  1_555 A DC 12 1_555 B DG 1  1_555 -0.113 -0.599 3.376 2.997  0.008  39.327 -0.888 0.532  3.359 0.011  
-4.445 39.436 10 AA_DT11DC12:DG13DA14_BB A 11 ? B 14 ? A 12 ? B 13 ? 
# 
loop_
_pdbx_nmr_spectrometer.field_strength 
_pdbx_nmr_spectrometer.manufacturer 
_pdbx_nmr_spectrometer.model 
_pdbx_nmr_spectrometer.spectrometer_id 
_pdbx_nmr_spectrometer.type 
600 Bruker AVANCE 1 'Bruker Avance' 
800 Bruker AVANCE 2 'Bruker Avance' 
# 
_atom_sites.entry_id                    2N9F 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
P 
# 
loop_