data_2N9Q # _entry.id 2N9Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104599 RCSB ? ? 2N9Q PDB pdb_00002n9q 10.2210/pdb2n9q/pdb 25915 BMRB ? 10.13018/BMR25915 D_1000104599 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-02-17 2 'Structure model' 1 1 2016-03-02 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_conn_type 8 3 'Structure model' struct_site 9 4 'Structure model' chem_comp_atom 10 4 'Structure model' chem_comp_bond 11 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.value' 18 3 'Structure model' '_struct_conn.conn_type_id' 19 3 'Structure model' '_struct_conn.id' 20 3 'Structure model' '_struct_conn.pdbx_dist_value' 21 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 3 'Structure model' '_struct_conn_type.id' 37 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 38 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 39 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 40 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N9Q _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-12-02 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # _pdbx_database_related.db_id 25915 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Thevarpadam, J.' 1 'Bessi, I.' 2 'Binas, O.' 3 'Goncalves, D.P.N.' 4 'Slavov, C.' 5 'Jonker, H.R.A.' 6 'Richter, C.' 7 'Wachtveitl, J.' 8 'Schwalbe, H.' 9 'Heckel, A.' 10 # _citation.id primary _citation.title 'Photoresponsive Formation of an Intermolecular Minimal G-Quadruplex Motif.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 55 _citation.page_first 2738 _citation.page_last 2742 _citation.year 2016 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26805928 _citation.pdbx_database_id_DOI 10.1002/anie.201510269 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thevarpadam, J.' 1 ? primary 'Bessi, I.' 2 ? primary 'Binas, O.' 3 ? primary 'Goncalves, D.P.' 4 ? primary 'Slavov, C.' 5 ? primary 'Jonker, H.R.' 6 ? primary 'Richter, C.' 7 ? primary 'Wachtveitl, J.' 8 ? primary 'Schwalbe, H.' 9 ? primary 'Heckel, A.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3') ; 1576.104 4 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(AZW)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGXGG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'POTASSIUM ION' _pdbx_entity_nonpoly.comp_id K # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 AZW n 1 4 DG n 1 5 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AZW non-polymer . '4-{(E)-[4-(hydroxymethyl)phenyl]diazenyl}benzyl dihydrogen phosphate' ? 'C14 H15 N2 O5 P' 322.253 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 AZW 3 3 3 AZW AZW A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n B 1 1 DG 1 1 1 DG DG B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 AZW 3 3 3 AZW AZW B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DG 5 5 5 DG DG B . n C 1 1 DG 1 1 1 DG DG C . n C 1 2 DG 2 2 2 DG DG C . n C 1 3 AZW 3 3 3 AZW AZW C . n C 1 4 DG 4 4 4 DG DG C . n C 1 5 DG 5 5 5 DG DG C . n D 1 1 DG 1 1 1 DG DG D . n D 1 2 DG 2 2 2 DG DG D . n D 1 3 AZW 3 3 3 AZW AZW D . n D 1 4 DG 4 4 4 DG DG D . n D 1 5 DG 5 5 5 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 K 1 101 1 K K A . F 2 K 1 102 2 K K A . G 2 K 1 101 3 K K C . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Tetramolecular G-quadruplex motif with a photoresponsive azobenzene linker' _exptl.entry_id 2N9Q _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N9Q _struct.title 'Photoswitchable G-quadruplex' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N9Q _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'quadruplex, photoswitch, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2N9Q _struct_ref.pdbx_db_accession 2N9Q _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2N9Q A 1 ? 5 ? 2N9Q 1 ? 5 ? 1 5 2 1 2N9Q B 1 ? 5 ? 2N9Q 1 ? 5 ? 1 5 3 1 2N9Q C 1 ? 5 ? 2N9Q 1 ? 5 ? 1 5 4 1 2N9Q D 1 ? 5 ? 2N9Q 1 ? 5 ? 1 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 2 "O3'" ? ? ? 1_555 A AZW 3 P ? ? A DG 2 A AZW 3 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale2 covale one ? A AZW 3 "O3'" ? ? ? 1_555 A DG 4 P ? ? A AZW 3 A DG 4 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale both ? B DG 2 "O3'" ? ? ? 1_555 B AZW 3 P ? ? B DG 2 B AZW 3 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale4 covale one ? B AZW 3 "O3'" ? ? ? 1_555 B DG 4 P ? ? B AZW 3 B DG 4 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale5 covale both ? C DG 2 "O3'" ? ? ? 1_555 C AZW 3 P ? ? C DG 2 C AZW 3 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale6 covale one ? C AZW 3 "O3'" ? ? ? 1_555 C DG 4 P ? ? C AZW 3 C DG 4 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale7 covale both ? D DG 2 "O3'" ? ? ? 1_555 D AZW 3 P ? ? D DG 2 D AZW 3 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale8 covale one ? D AZW 3 "O3'" ? ? ? 1_555 D DG 4 P ? ? D AZW 3 D DG 4 1_555 ? ? ? ? ? ? ? 1.606 ? ? metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 E K . K ? ? A DG 1 A K 101 1_555 ? ? ? ? ? ? ? 2.737 ? ? metalc2 metalc ? ? A DG 1 O6 ? ? ? 1_555 F K . K ? ? A DG 1 A K 102 1_555 ? ? ? ? ? ? ? 2.718 ? ? metalc3 metalc ? ? A DG 2 O6 ? ? ? 1_555 E K . K ? ? A DG 2 A K 101 1_555 ? ? ? ? ? ? ? 2.629 ? ? metalc4 metalc ? ? A DG 4 O6 ? ? ? 1_555 E K . K ? ? A DG 4 A K 101 1_555 ? ? ? ? ? ? ? 2.656 ? ? metalc5 metalc ? ? A DG 5 O6 ? ? ? 1_555 E K . K ? ? A DG 5 A K 101 1_555 ? ? ? ? ? ? ? 3.130 ? ? metalc6 metalc ? ? A DG 5 O6 ? ? ? 1_555 F K . K ? ? A DG 5 A K 102 1_555 ? ? ? ? ? ? ? 2.905 ? ? metalc7 metalc ? ? E K . K ? ? ? 1_555 B DG 1 O6 ? ? A K 101 B DG 1 1_555 ? ? ? ? ? ? ? 2.724 ? ? metalc8 metalc ? ? E K . K ? ? ? 1_555 B DG 2 O6 ? ? A K 101 B DG 2 1_555 ? ? ? ? ? ? ? 2.656 ? ? metalc9 metalc ? ? E K . K ? ? ? 1_555 B DG 4 O6 ? ? A K 101 B DG 4 1_555 ? ? ? ? ? ? ? 2.655 ? ? metalc10 metalc ? ? E K . K ? ? ? 1_555 B DG 5 O6 ? ? A K 101 B DG 5 1_555 ? ? ? ? ? ? ? 3.118 ? ? metalc11 metalc ? ? F K . K ? ? ? 1_555 B DG 1 O6 ? ? A K 102 B DG 1 1_555 ? ? ? ? ? ? ? 2.761 ? ? metalc12 metalc ? ? F K . K ? ? ? 1_555 B DG 5 O6 ? ? A K 102 B DG 5 1_555 ? ? ? ? ? ? ? 2.929 ? ? metalc13 metalc ? ? F K . K ? ? ? 1_555 C DG 1 O6 ? ? A K 102 C DG 1 1_555 ? ? ? ? ? ? ? 2.782 ? ? metalc14 metalc ? ? F K . K ? ? ? 1_555 C DG 5 O6 ? ? A K 102 C DG 5 1_555 ? ? ? ? ? ? ? 3.087 ? ? metalc15 metalc ? ? F K . K ? ? ? 1_555 D DG 1 O6 ? ? A K 102 D DG 1 1_555 ? ? ? ? ? ? ? 2.727 ? ? metalc16 metalc ? ? F K . K ? ? ? 1_555 D DG 5 O6 ? ? A K 102 D DG 5 1_555 ? ? ? ? ? ? ? 2.914 ? ? metalc17 metalc ? ? C DG 1 O6 ? ? ? 1_555 G K . K ? ? C DG 1 C K 101 1_555 ? ? ? ? ? ? ? 2.686 ? ? metalc18 metalc ? ? C DG 2 O6 ? ? ? 1_555 G K . K ? ? C DG 2 C K 101 1_555 ? ? ? ? ? ? ? 2.770 ? ? metalc19 metalc ? ? C DG 4 O6 ? ? ? 1_555 G K . K ? ? C DG 4 C K 101 1_555 ? ? ? ? ? ? ? 2.605 ? ? metalc20 metalc ? ? C DG 5 O6 ? ? ? 1_555 G K . K ? ? C DG 5 C K 101 1_555 ? ? ? ? ? ? ? 3.191 ? ? metalc21 metalc ? ? G K . K ? ? ? 1_555 D DG 1 O6 ? ? C K 101 D DG 1 1_555 ? ? ? ? ? ? ? 2.757 ? ? metalc22 metalc ? ? G K . K ? ? ? 1_555 D DG 2 O6 ? ? C K 101 D DG 2 1_555 ? ? ? ? ? ? ? 2.682 ? ? metalc23 metalc ? ? G K . K ? ? ? 1_555 D DG 4 O6 ? ? C K 101 D DG 4 1_555 ? ? ? ? ? ? ? 2.626 ? ? metalc24 metalc ? ? G K . K ? ? ? 1_555 D DG 5 O6 ? ? C K 101 D DG 5 1_555 ? ? ? ? ? ? ? 3.128 ? ? hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 5 N2 ? ? A DG 1 A DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 5 N1 ? ? A DG 1 A DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DG 5 O6 ? ? A DG 1 B DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DG 5 N7 ? ? A DG 1 B DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 4 O6 ? ? A DG 2 A DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 4 N7 ? ? A DG 2 A DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 B DG 4 N2 ? ? A DG 2 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DG 4 N1 ? ? A DG 2 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DG 2 O6 ? ? A DG 4 B DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DG 2 N7 ? ? A DG 4 B DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 5 N7 ? ? ? 1_555 B DG 1 N2 ? ? A DG 5 B DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DG 1 N1 ? ? A DG 5 B DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? B DG 1 N7 ? ? ? 1_555 B DG 5 N2 ? ? B DG 1 B DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? B DG 1 O6 ? ? ? 1_555 B DG 5 N1 ? ? B DG 1 B DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DG 4 O6 ? ? B DG 2 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DG 4 N7 ? ? B DG 2 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? C DG 1 N7 ? ? ? 1_555 C DG 5 N2 ? ? C DG 1 C DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? C DG 1 O6 ? ? ? 1_555 C DG 5 N1 ? ? C DG 1 C DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DG 5 O6 ? ? C DG 1 D DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DG 5 N7 ? ? C DG 1 D DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? C DG 2 N1 ? ? ? 1_555 C DG 4 O6 ? ? C DG 2 C DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? C DG 2 N2 ? ? ? 1_555 C DG 4 N7 ? ? C DG 2 C DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? C DG 2 N7 ? ? ? 1_555 D DG 4 N2 ? ? C DG 2 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DG 4 N1 ? ? C DG 2 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DG 2 O6 ? ? C DG 4 D DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DG 2 N7 ? ? C DG 4 D DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? C DG 5 N7 ? ? ? 1_555 D DG 1 N2 ? ? C DG 5 D DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DG 1 N1 ? ? C DG 5 D DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? D DG 1 N7 ? ? ? 1_555 D DG 5 N2 ? ? D DG 1 D DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? D DG 1 O6 ? ? ? 1_555 D DG 5 N1 ? ? D DG 1 D DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? D DG 2 N1 ? ? ? 1_555 D DG 4 O6 ? ? D DG 2 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? D DG 2 N2 ? ? ? 1_555 D DG 4 N7 ? ? D DG 2 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 1_555 77.6 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 114.5 ? 3 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 76.3 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 59.3 ? 5 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 109.4 ? 6 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 75.1 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 87.3 ? 8 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 164.9 ? 9 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 110.7 ? 10 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 61.6 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 164.4 ? 12 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 118.0 ? 13 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 73.1 ? 14 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 112.6 ? 15 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 77.1 ? 16 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 113.5 ? 17 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 74.2 ? 18 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 115.1 ? 19 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 169.9 ? 20 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 112.7 ? 21 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 72.3 ? 22 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 60.7 ? 23 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 111.5 ? 24 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 168.1 ? 25 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 93.5 ? 26 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 59.6 ? 27 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 109.1 ? 28 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 76.4 ? 29 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 62.6 ? 30 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 86.9 ? 31 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 64.3 ? 32 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 63.4 ? 33 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 102.6 ? 34 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 61.7 ? 35 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? C DG 1 ? C DG 1 ? 1_555 123.8 ? 36 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? C DG 1 ? C DG 1 ? 1_555 82.9 ? 37 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? C DG 1 ? C DG 1 ? 1_555 117.7 ? 38 O6 ? B DG 5 ? B DG 5 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? C DG 1 ? C DG 1 ? 1_555 172.7 ? 39 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? C DG 5 ? C DG 5 ? 1_555 85.6 ? 40 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? C DG 5 ? C DG 5 ? 1_555 108.1 ? 41 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? C DG 5 ? C DG 5 ? 1_555 171.3 ? 42 O6 ? B DG 5 ? B DG 5 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? C DG 5 ? C DG 5 ? 1_555 118.2 ? 43 O6 ? C DG 1 ? C DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? C DG 5 ? C DG 5 ? 1_555 63.6 ? 44 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? D DG 1 ? D DG 1 ? 1_555 119.7 ? 45 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? D DG 1 ? D DG 1 ? 1_555 168.3 ? 46 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? D DG 1 ? D DG 1 ? 1_555 126.2 ? 47 O6 ? B DG 5 ? B DG 5 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? D DG 1 ? D DG 1 ? 1_555 88.0 ? 48 O6 ? C DG 1 ? C DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? D DG 1 ? D DG 1 ? 1_555 86.9 ? 49 O6 ? C DG 5 ? C DG 5 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? D DG 1 ? D DG 1 ? 1_555 61.9 ? 50 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 170.3 ? 51 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 116.1 ? 52 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 84.1 ? 53 O6 ? B DG 5 ? B DG 5 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 108.8 ? 54 O6 ? C DG 1 ? C DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 64.2 ? 55 O6 ? C DG 5 ? C DG 5 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 103.7 ? 56 O6 ? D DG 1 ? D DG 1 ? 1_555 K ? F K . ? A K 102 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 63.8 ? 57 O6 ? C DG 1 ? C DG 1 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? C DG 2 ? C DG 2 ? 1_555 78.2 ? 58 O6 ? C DG 1 ? C DG 1 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? C DG 4 ? C DG 4 ? 1_555 112.2 ? 59 O6 ? C DG 2 ? C DG 2 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? C DG 4 ? C DG 4 ? 1_555 75.6 ? 60 O6 ? C DG 1 ? C DG 1 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? C DG 5 ? C DG 5 ? 1_555 63.1 ? 61 O6 ? C DG 2 ? C DG 2 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? C DG 5 ? C DG 5 ? 1_555 114.0 ? 62 O6 ? C DG 4 ? C DG 4 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? C DG 5 ? C DG 5 ? 1_555 73.1 ? 63 O6 ? C DG 1 ? C DG 1 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 1 ? D DG 1 ? 1_555 88.2 ? 64 O6 ? C DG 2 ? C DG 2 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 1 ? D DG 1 ? 1_555 166.3 ? 65 O6 ? C DG 4 ? C DG 4 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 1 ? D DG 1 ? 1_555 112.1 ? 66 O6 ? C DG 5 ? C DG 5 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 1 ? D DG 1 ? 1_555 60.2 ? 67 O6 ? C DG 1 ? C DG 1 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 2 ? D DG 2 ? 1_555 160.7 ? 68 O6 ? C DG 2 ? C DG 2 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 2 ? D DG 2 ? 1_555 120.2 ? 69 O6 ? C DG 4 ? C DG 4 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 2 ? D DG 2 ? 1_555 70.6 ? 70 O6 ? C DG 5 ? C DG 5 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 2 ? D DG 2 ? 1_555 101.3 ? 71 O6 ? D DG 1 ? D DG 1 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 2 ? D DG 2 ? 1_555 73.5 ? 72 O6 ? C DG 1 ? C DG 1 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 114.5 ? 73 O6 ? C DG 2 ? C DG 2 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 74.9 ? 74 O6 ? C DG 4 ? C DG 4 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 116.8 ? 75 O6 ? C DG 5 ? C DG 5 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 168.8 ? 76 O6 ? D DG 1 ? D DG 1 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 109.5 ? 77 O6 ? D DG 2 ? D DG 2 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 78.5 ? 78 O6 ? C DG 1 ? C DG 1 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 62.2 ? 79 O6 ? C DG 2 ? C DG 2 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 110.2 ? 80 O6 ? C DG 4 ? C DG 4 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 169.7 ? 81 O6 ? C DG 5 ? C DG 5 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 96.6 ? 82 O6 ? D DG 1 ? D DG 1 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 60.5 ? 83 O6 ? D DG 2 ? D DG 2 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 111.7 ? 84 O6 ? D DG 4 ? D DG 4 ? 1_555 K ? G K . ? C K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 73.3 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 8 'BINDING SITE FOR RESIDUE K A 101' AC2 Software A K 102 ? 8 'BINDING SITE FOR RESIDUE K A 102' AC3 Software C K 101 ? 8 'BINDING SITE FOR RESIDUE K C 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DG A 1 ? DG A 1 . ? 1_555 ? 2 AC1 8 DG A 2 ? DG A 2 . ? 1_555 ? 3 AC1 8 DG A 4 ? DG A 4 . ? 1_555 ? 4 AC1 8 DG A 5 ? DG A 5 . ? 1_555 ? 5 AC1 8 DG B 1 ? DG B 1 . ? 1_555 ? 6 AC1 8 DG B 2 ? DG B 2 . ? 1_555 ? 7 AC1 8 DG B 4 ? DG B 4 . ? 1_555 ? 8 AC1 8 DG B 5 ? DG B 5 . ? 1_555 ? 9 AC2 8 DG A 1 ? DG A 1 . ? 1_555 ? 10 AC2 8 DG A 5 ? DG A 5 . ? 1_555 ? 11 AC2 8 DG B 1 ? DG B 1 . ? 1_555 ? 12 AC2 8 DG B 5 ? DG B 5 . ? 1_555 ? 13 AC2 8 DG C 1 ? DG C 1 . ? 1_555 ? 14 AC2 8 DG C 5 ? DG C 5 . ? 1_555 ? 15 AC2 8 DG D 1 ? DG D 1 . ? 1_555 ? 16 AC2 8 DG D 5 ? DG D 5 . ? 1_555 ? 17 AC3 8 DG C 1 ? DG C 1 . ? 1_555 ? 18 AC3 8 DG C 2 ? DG C 2 . ? 1_555 ? 19 AC3 8 DG C 4 ? DG C 4 . ? 1_555 ? 20 AC3 8 DG C 5 ? DG C 5 . ? 1_555 ? 21 AC3 8 DG D 1 ? DG D 1 . ? 1_555 ? 22 AC3 8 DG D 2 ? DG D 2 . ? 1_555 ? 23 AC3 8 DG D 4 ? DG D 4 . ? 1_555 ? 24 AC3 8 DG D 5 ? DG D 5 . ? 1_555 ? # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N9Q _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N9Q _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;550 uM DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3'), 25 mM Tris-HCl, 50 mM KCl, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;550 uM DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3'), 25 mM Tris-HCl, 50 mM KCl, 100% D2O ; 2 '100% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3')-1 ; 550 ? uM ? 1 Tris-HCl-2 25 ? mM ? 1 KCl-3 50 ? mM ? 1 ;DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3')-4 ; 550 ? uM ? 2 Tris-HCl-5 25 ? mM ? 2 KCl-6 50 ? mM ? 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 71 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 2 '2D 1H-13C HSQC' 1 2 1 '2D 1H-13C HMBC' 1 3 2 '2D 1H-31P TOCSY' 1 4 2 '2D 1H-1H P.E. COSY' 1 5 1 '2D 1H-1H NOESY' 1 6 2 '2D 1H-1H NOESY' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2N9Q _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 193 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 92 _pdbx_nmr_constraints.NOE_long_range_total_count 22 _pdbx_nmr_constraints.NOE_medium_range_total_count 1 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 42 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2N9Q _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'simulated annealing with cartesian angle dynamics' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.1 1 ;Linge, O'Donoghue and Nilges ; 'structure solution' ARIA 1.2 2 ;Linge, O'Donoghue and Nilges ; refinement ARIA 1.2 3 'Bruker Biospin' collection TopSpin 3.2 4 'Bruker Biospin' processing TopSpin 3.2 5 Goddard 'chemical shift assignment' Sparky 3.114 6 Goddard 'data analysis' Sparky 3.114 7 Goddard 'peak picking' Sparky 3.114 8 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AZW P P N N 1 AZW OP1 O N N 2 AZW OP2 O N N 3 AZW "O5'" O N N 4 AZW "C5'" C N N 5 AZW C1A C Y N 6 AZW C2A C Y N 7 AZW C6A C Y N 8 AZW C3A C Y N 9 AZW C5A C Y N 10 AZW C4A C Y N 11 AZW N5A N N N 12 AZW C1B C Y N 13 AZW C2B C Y N 14 AZW C6B C Y N 15 AZW C3B C Y N 16 AZW C5B C Y N 17 AZW C4B C Y N 18 AZW N5B N N N 19 AZW "C3'" C N N 20 AZW "O3'" O N N 21 AZW H2 H N N 22 AZW "H5'" H N N 23 AZW "H5''" H N N 24 AZW H2A H N N 25 AZW H6A H N N 26 AZW H3A H N N 27 AZW H5A H N N 28 AZW H2B H N N 29 AZW H6B H N N 30 AZW H3B H N N 31 AZW H5B H N N 32 AZW "H3'" H N N 33 AZW "H3''" H N N 34 AZW H3 H N N 35 AZW OP3 O N N 36 AZW HOP3 H N N 37 DG OP3 O N N 38 DG P P N N 39 DG OP1 O N N 40 DG OP2 O N N 41 DG "O5'" O N N 42 DG "C5'" C N N 43 DG "C4'" C N R 44 DG "O4'" O N N 45 DG "C3'" C N S 46 DG "O3'" O N N 47 DG "C2'" C N N 48 DG "C1'" C N R 49 DG N9 N Y N 50 DG C8 C Y N 51 DG N7 N Y N 52 DG C5 C Y N 53 DG C6 C N N 54 DG O6 O N N 55 DG N1 N N N 56 DG C2 C N N 57 DG N2 N N N 58 DG N3 N N N 59 DG C4 C Y N 60 DG HOP3 H N N 61 DG HOP2 H N N 62 DG "H5'" H N N 63 DG "H5''" H N N 64 DG "H4'" H N N 65 DG "H3'" H N N 66 DG "HO3'" H N N 67 DG "H2'" H N N 68 DG "H2''" H N N 69 DG "H1'" H N N 70 DG H8 H N N 71 DG H1 H N N 72 DG H21 H N N 73 DG H22 H N N 74 K K K N N 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AZW OP1 P doub N N 1 AZW P OP2 sing N N 2 AZW P "O5'" sing N N 3 AZW "C5'" "O5'" sing N N 4 AZW "C5'" C1A sing N N 5 AZW C2A C1A doub Y N 6 AZW C2A C3A sing Y N 7 AZW C1A C6A sing Y N 8 AZW C3A C4A doub Y N 9 AZW C6A C5A doub Y N 10 AZW C4A C5A sing Y N 11 AZW C4A N5A sing N N 12 AZW N5B N5A doub N N 13 AZW N5B C4B sing N N 14 AZW C3B C4B doub Y N 15 AZW C3B C2B sing Y N 16 AZW C4B C5B sing Y N 17 AZW C2B C1B doub Y N 18 AZW C5B C6B doub Y N 19 AZW C1B C6B sing Y N 20 AZW C1B "C3'" sing N N 21 AZW "O3'" "C3'" sing N N 22 AZW OP2 H2 sing N N 23 AZW "C5'" "H5'" sing N N 24 AZW "C5'" "H5''" sing N N 25 AZW C2A H2A sing N N 26 AZW C6A H6A sing N N 27 AZW C3A H3A sing N N 28 AZW C5A H5A sing N N 29 AZW C2B H2B sing N N 30 AZW C6B H6B sing N N 31 AZW C3B H3B sing N N 32 AZW C5B H5B sing N N 33 AZW "C3'" "H3'" sing N N 34 AZW "C3'" "H3''" sing N N 35 AZW "O3'" H3 sing N N 36 AZW P OP3 sing N N 37 AZW OP3 HOP3 sing N N 38 DG OP3 P sing N N 39 DG OP3 HOP3 sing N N 40 DG P OP1 doub N N 41 DG P OP2 sing N N 42 DG P "O5'" sing N N 43 DG OP2 HOP2 sing N N 44 DG "O5'" "C5'" sing N N 45 DG "C5'" "C4'" sing N N 46 DG "C5'" "H5'" sing N N 47 DG "C5'" "H5''" sing N N 48 DG "C4'" "O4'" sing N N 49 DG "C4'" "C3'" sing N N 50 DG "C4'" "H4'" sing N N 51 DG "O4'" "C1'" sing N N 52 DG "C3'" "O3'" sing N N 53 DG "C3'" "C2'" sing N N 54 DG "C3'" "H3'" sing N N 55 DG "O3'" "HO3'" sing N N 56 DG "C2'" "C1'" sing N N 57 DG "C2'" "H2'" sing N N 58 DG "C2'" "H2''" sing N N 59 DG "C1'" N9 sing N N 60 DG "C1'" "H1'" sing N N 61 DG N9 C8 sing Y N 62 DG N9 C4 sing Y N 63 DG C8 N7 doub Y N 64 DG C8 H8 sing N N 65 DG N7 C5 sing Y N 66 DG C5 C6 sing N N 67 DG C5 C4 doub Y N 68 DG C6 O6 doub N N 69 DG C6 N1 sing N N 70 DG N1 C2 sing N N 71 DG N1 H1 sing N N 72 DG C2 N2 sing N N 73 DG C2 N3 doub N N 74 DG N2 H21 sing N N 75 DG N2 H22 sing N N 76 DG N3 C4 sing N N 77 # _ndb_struct_conf_na.entry_id 2N9Q _ndb_struct_conf_na.feature 'quadruple helix' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _atom_sites.entry_id 2N9Q _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H K N O P # loop_