HEADER TOXIN 12-DEC-15 2N9W TITLE SOLUTION NMR STRUCTURE OF THE MEMBRANE LOCALIZATION DOMAIN FROM THE TITLE 2 RAS/RAP1-SPECIFIC ENDOPEPTIDASE (RRSP) OF THE VIBRIO VULNIFICUS TITLE 3 MULTIFUNCTIONAL AUTOPROCESSING REPEATS-IN-TOXINS (MARTX) TOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RTX TOXIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 3591-3669; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 672; SOURCE 4 GENE: LO82_10955; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PYCPET KEYWDS BACTERIAL TOXIN, MEMBRANE LOCALIZATION DOMAINS, TOXIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.S.HISAO,M.C.BROTHERS,M.HO,B.A.WILSON,C.M.RIENSTRA REVDAT 5 15-MAY-24 2N9W 1 REMARK REVDAT 4 14-JUN-23 2N9W 1 REMARK SEQADV REVDAT 3 08-MAR-17 2N9W 1 JRNL REVDAT 2 28-DEC-16 2N9W 1 JRNL REVDAT 1 07-DEC-16 2N9W 0 JRNL AUTH G.S.HISAO,M.C.BROTHERS,M.HO,B.A.WILSON,C.M.RIENSTRA JRNL TITL THE MEMBRANE LOCALIZATION DOMAINS OF TWO DISTINCT BACTERIAL JRNL TITL 2 TOXINS FORM A 4-HELIX-BUNDLE IN SOLUTION. JRNL REF PROTEIN SCI. V. 26 497 2017 JRNL REFN ISSN 0961-8368 JRNL PMID 27977897 JRNL DOI 10.1002/PRO.3097 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ 2.3, X-PLOR NIH REMARK 3 AUTHORS : VARIAN (VNMRJ), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000104605. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.5 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 MLDVVRRSP, 20 MM TRIS, 500 MM REMARK 210 SODIUM CHLORIDE, 0.01 % DSS, 2 REMARK 210 MM EDTA, 90% H2O/10% D2O; 1 MM REMARK 210 [U-99% 13C; U-99% 15N] MLDVVRRSP, REMARK 210 20 MM TRIS, 500 MM SODIUM REMARK 210 CHLORIDE, 0.01 % DSS, 2 MM EDTA, REMARK 210 99% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCACB; 3D C(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D HNHA; 3D 1H- REMARK 210 15N NOESY; 3D 1H-15N TOCSY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, TALOS-N, REMARK 210 SPARKY, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 34 H GLN A 37 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 3 -63.11 -157.91 REMARK 500 1 VAL A 16 -87.67 45.88 REMARK 500 1 ALA A 23 -67.04 76.18 REMARK 500 1 VAL A 35 -19.28 -42.73 REMARK 500 1 ASN A 55 -19.94 -49.80 REMARK 500 1 ALA A 80 -5.81 -46.49 REMARK 500 1 GLU A 84 114.40 57.30 REMARK 500 2 VAL A 16 -107.22 39.66 REMARK 500 2 ALA A 18 84.02 41.31 REMARK 500 2 ALA A 23 -136.40 -164.10 REMARK 500 3 GLN A 3 91.65 41.79 REMARK 500 3 VAL A 16 -105.60 30.05 REMARK 500 3 ALA A 18 172.47 52.55 REMARK 500 3 ALA A 23 6.99 52.52 REMARK 500 3 HIS A 86 42.31 -162.35 REMARK 500 4 GLN A 3 -91.43 -56.54 REMARK 500 4 ALA A 18 72.71 -152.24 REMARK 500 4 ALA A 23 -167.78 -165.33 REMARK 500 4 GLU A 84 -96.85 56.01 REMARK 500 4 HIS A 86 105.68 -165.57 REMARK 500 4 HIS A 88 60.19 -171.23 REMARK 500 5 VAL A 16 -89.90 46.50 REMARK 500 5 ALA A 18 173.60 52.46 REMARK 500 5 ALA A 23 155.76 81.28 REMARK 500 5 HIS A 85 -77.03 -55.48 REMARK 500 5 HIS A 87 15.95 -151.73 REMARK 500 6 VAL A 16 -90.26 39.24 REMARK 500 6 GLU A 84 107.99 58.40 REMARK 500 6 HIS A 87 -78.07 -166.47 REMARK 500 6 HIS A 88 112.36 55.41 REMARK 500 7 GLN A 3 87.22 -157.58 REMARK 500 7 VAL A 16 118.78 49.81 REMARK 500 7 LYS A 19 159.22 -44.93 REMARK 500 7 ALA A 23 77.88 41.76 REMARK 500 7 GLU A 84 -83.95 55.26 REMARK 500 8 VAL A 16 -177.62 42.98 REMARK 500 8 ALA A 18 166.55 70.45 REMARK 500 8 ALA A 23 -67.85 75.11 REMARK 500 8 SER A 64 149.14 69.21 REMARK 500 8 GLU A 84 146.67 58.92 REMARK 500 8 HIS A 85 146.78 59.14 REMARK 500 8 HIS A 86 -86.97 -58.87 REMARK 500 8 HIS A 87 -148.25 43.47 REMARK 500 9 VAL A 16 -101.34 27.69 REMARK 500 9 GLU A 84 93.79 55.62 REMARK 500 9 HIS A 87 -39.02 -167.67 REMARK 500 10 VAL A 16 -146.12 34.31 REMARK 500 10 ALA A 18 -130.25 63.93 REMARK 500 10 ALA A 23 -64.59 76.07 REMARK 500 10 HIS A 87 104.10 55.29 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18562 RELATED DB: BMRB REMARK 900 RELATED ID: 2N9V RELATED DB: PDB DBREF1 2N9W A 3 81 UNP A0A0M1PTL9_VIBVL DBREF2 2N9W A A0A0M1PTL9 3591 3669 SEQADV 2N9W MET A 1 UNP A0A0M1PTL EXPRESSION TAG SEQADV 2N9W GLY A 2 UNP A0A0M1PTL EXPRESSION TAG SEQADV 2N9W GLY A 82 UNP A0A0M1PTL EXPRESSION TAG SEQADV 2N9W LEU A 83 UNP A0A0M1PTL EXPRESSION TAG SEQADV 2N9W GLU A 84 UNP A0A0M1PTL EXPRESSION TAG SEQADV 2N9W HIS A 85 UNP A0A0M1PTL EXPRESSION TAG SEQADV 2N9W HIS A 86 UNP A0A0M1PTL EXPRESSION TAG SEQADV 2N9W HIS A 87 UNP A0A0M1PTL EXPRESSION TAG SEQADV 2N9W HIS A 88 UNP A0A0M1PTL EXPRESSION TAG SEQADV 2N9W HIS A 89 UNP A0A0M1PTL EXPRESSION TAG SEQADV 2N9W HIS A 90 UNP A0A0M1PTL EXPRESSION TAG SEQRES 1 A 90 MET GLY GLN ILE PHE THR VAL GLN GLU LEU LYS GLU ARG SEQRES 2 A 90 ALA LYS VAL PHE ALA LYS PRO ILE GLY ALA SER TYR GLN SEQRES 3 A 90 GLY ILE LEU ASP GLN LEU ASP LEU VAL HIS GLN ALA LYS SEQRES 4 A 90 GLY ARG ASP GLN ILE ALA ALA SER PHE GLU LEU ASN LYS SEQRES 5 A 90 LYS ILE ASN ASP TYR ILE ALA GLU HIS PRO THR SER GLY SEQRES 6 A 90 ARG ASN GLN ALA LEU THR GLN LEU LYS GLU GLN VAL THR SEQRES 7 A 90 SER ALA LEU GLY LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 6 VAL A 16 1 11 HELIX 2 2 ALA A 23 TYR A 25 5 3 HELIX 3 3 GLN A 26 VAL A 35 1 10 HELIX 4 4 GLY A 40 HIS A 61 1 22 HELIX 5 5 GLY A 65 VAL A 77 1 13 HELIX 6 6 THR A 78 GLY A 82 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1