data_2NA5 # _entry.id 2NA5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104614 RCSB ? ? 2NA5 PDB pdb_00002na5 10.2210/pdb2na5/pdb 25928 BMRB ? ? D_1000104614 WWPDB ? ? # _pdbx_database_related.db_id 25928 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2NA5 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-12-21 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Doyle, R.P.' 1 'Henry, K.E.' 2 'Roth, C.L.' 3 'Kerwood, D.J.' 4 'Allis, D.G.' 5 'Holz, G.G.' 6 'Zubieta, J.' 7 # _citation.id primary _citation.title 'Solution Structure and Constrained Molecular Dynamics Study of Vitamin B12 Conjugates of the Anorectic Peptide PYY(3-36).' _citation.journal_abbrev Chemmedchem _citation.journal_volume 11 _citation.page_first 1015 _citation.page_last 1021 _citation.year 2016 _citation.journal_id_ASTM ? _citation.country DE _citation.journal_id_ISSN 1860-7179 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27027248 _citation.pdbx_database_id_DOI 10.1002/cmdc.201600073 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Henry, K.E.' 1 ? primary 'Kerwood, D.J.' 2 ? primary 'Allis, D.G.' 3 ? primary 'Workinger, J.L.' 4 ? primary 'Bonaccorso, R.L.' 5 ? primary 'Holz, G.G.' 6 ? primary 'Roth, C.L.' 7 ? primary 'Zubieta, J.' 8 ? primary 'Doyle, R.P.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Peptide YY' 4150.594 1 ? ? 'residues 31-64' ? 2 non-polymer syn CYANOCOBALAMIN 1356.373 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PYY, PYY-I, Peptide tyrosine tyrosine, Peptide YY(3-36), PYY-II' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'I(4QK)PEAPGEDASPEELNRYYASLRHYLNLVTRQRY' _entity_poly.pdbx_seq_one_letter_code_can IXPEAPGEDASPEELNRYYASLRHYLNLVTRQRY _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 4QK n 1 3 PRO n 1 4 GLU n 1 5 ALA n 1 6 PRO n 1 7 GLY n 1 8 GLU n 1 9 ASP n 1 10 ALA n 1 11 SER n 1 12 PRO n 1 13 GLU n 1 14 GLU n 1 15 LEU n 1 16 ASN n 1 17 ARG n 1 18 TYR n 1 19 TYR n 1 20 ALA n 1 21 SER n 1 22 LEU n 1 23 ARG n 1 24 HIS n 1 25 TYR n 1 26 LEU n 1 27 ASN n 1 28 LEU n 1 29 VAL n 1 30 THR n 1 31 ARG n 1 32 GLN n 1 33 ARG n 1 34 TYR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PYY_HUMAN _struct_ref.pdbx_db_accession P10082 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code IKPEAPREDASPEELNRYYASLRHYLNLVTRQRY _struct_ref.pdbx_align_begin 31 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2NA5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 33 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P10082 _struct_ref_seq.db_align_beg 31 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 64 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 36 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4QK 'L-peptide linking' . '6-[4-(2-aminoethyl)-1H-1,2,3-triazol-1-yl]-L-norleucine' ? 'C10 H19 N5 O2' 241.290 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CNC non-polymer . CYANOCOBALAMIN ? 'C63 H89 Co N14 O14 P 2' 1356.373 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 NOESY 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D DQF-COSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 5.5 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '1 mM vitamin B12 conjugate of PYY3, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2NA5 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ;2D NOE cross peaks were categorized as strong, medium, or weak and distance constraints were set to 1.8 to 3.5A, 1.8 to 4.5A and 1.8 to 6.0A. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 4 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2NA5 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2NA5 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin 1.3 1 'Bruker Biospin' 'chemical shift calculation' TopSpin 1.3 2 'Bruker Biospin' 'chemical shift assignment' TopSpin 1.3 3 'Schwede et al.' refinement GROMOS96 ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2NA5 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2NA5 _struct.title 'NMR solution structure of vitamin B12 conjugates of PYY3-36' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NA5 _struct_keywords.pdbx_keywords HORMONE _struct_keywords.text 'vitamin-peptide conjugate, HORMONE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 10 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id THR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 30 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 13 _struct_conf.end_auth_comp_id THR _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 33 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ILE 1 C ? ? ? 1_555 A 4QK 2 N ? ? A ILE 3 A 4QK 4 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale2 covale both ? A 4QK 2 C ? ? ? 1_555 A PRO 3 N ? ? A 4QK 4 A PRO 6 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale3 covale one ? A 4QK 2 NZ2 ? ? ? 1_555 B CNC . C5R ? ? A 4QK 4 A CNC 101 1_555 ? ? ? ? ? ? ? 1.341 ? ? metalc1 metalc ? ? B CNC . N3B ? ? ? 1_555 B CNC . CO ? ? A CNC 101 A CNC 101 1_555 ? ? ? ? ? ? ? 2.072 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CNC _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE CNC A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 4QK A 2 ? 4QK A 4 . ? 1_555 ? 2 AC1 7 ALA A 5 ? ALA A 8 . ? 1_555 ? 3 AC1 7 PRO A 6 ? PRO A 9 . ? 1_555 ? 4 AC1 7 GLY A 7 ? GLY A 10 . ? 1_555 ? 5 AC1 7 SER A 11 ? SER A 14 . ? 1_555 ? 6 AC1 7 LEU A 15 ? LEU A 18 . ? 1_555 ? 7 AC1 7 TYR A 18 ? TYR A 21 . ? 1_555 ? # _atom_sites.entry_id 2NA5 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 3 3 ILE ILE A . n A 1 2 4QK 2 4 4 4QK LCT A . n A 1 3 PRO 3 6 5 PRO PRO A . n A 1 4 GLU 4 7 6 GLU GLU A . n A 1 5 ALA 5 8 7 ALA ALA A . n A 1 6 PRO 6 9 8 PRO PRO A . n A 1 7 GLY 7 10 9 GLY GLY A . n A 1 8 GLU 8 11 10 GLU GLU A . n A 1 9 ASP 9 12 11 ASP ASP A . n A 1 10 ALA 10 13 12 ALA ALA A . n A 1 11 SER 11 14 13 SER SER A . n A 1 12 PRO 12 15 14 PRO PRO A . n A 1 13 GLU 13 16 15 GLU GLU A . n A 1 14 GLU 14 17 16 GLU GLU A . n A 1 15 LEU 15 18 17 LEU LEU A . n A 1 16 ASN 16 19 18 ASN ASN A . n A 1 17 ARG 17 20 19 ARG ARG A . n A 1 18 TYR 18 21 20 TYR TYR A . n A 1 19 TYR 19 22 21 TYR TYR A . n A 1 20 ALA 20 23 22 ALA ALA A . n A 1 21 SER 21 24 23 SER SER A . n A 1 22 LEU 22 25 24 LEU LEU A . n A 1 23 ARG 23 26 25 ARG ARG A . n A 1 24 HIS 24 27 26 HIS HIS A . n A 1 25 TYR 25 28 27 TYR TYR A . n A 1 26 LEU 26 29 28 LEU LEU A . n A 1 27 ASN 27 30 29 ASN ASN A . n A 1 28 LEU 28 31 30 LEU LEU A . n A 1 29 VAL 29 32 31 VAL VAL A . n A 1 30 THR 30 33 32 THR THR A . n A 1 31 ARG 31 34 33 ARG ARG A . n A 1 32 GLN 32 35 34 GLN GLN A . n A 1 33 ARG 33 36 35 ARG ARG A . n A 1 34 TYR 34 37 36 TYR TYR A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id CNC _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 40 _pdbx_nonpoly_scheme.pdb_mon_id CNC _pdbx_nonpoly_scheme.auth_mon_id CNC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N3B ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 N21 ? B CNC . ? A CNC 101 ? 1_555 95.9 ? 2 N3B ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 N22 ? B CNC . ? A CNC 101 ? 1_555 91.1 ? 3 N21 ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 N22 ? B CNC . ? A CNC 101 ? 1_555 89.9 ? 4 N3B ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 N23 ? B CNC . ? A CNC 101 ? 1_555 84.4 ? 5 N21 ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 N23 ? B CNC . ? A CNC 101 ? 1_555 173.9 ? 6 N22 ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 N23 ? B CNC . ? A CNC 101 ? 1_555 96.2 ? 7 N3B ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 N24 ? B CNC . ? A CNC 101 ? 1_555 96.1 ? 8 N21 ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 N24 ? B CNC . ? A CNC 101 ? 1_555 84.5 ? 9 N22 ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 N24 ? B CNC . ? A CNC 101 ? 1_555 171.3 ? 10 N23 ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 N24 ? B CNC . ? A CNC 101 ? 1_555 89.4 ? 11 N3B ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 C1A ? B CNC . ? A CNC 101 ? 1_555 166.7 ? 12 N21 ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 C1A ? B CNC . ? A CNC 101 ? 1_555 95.8 ? 13 N22 ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 C1A ? B CNC . ? A CNC 101 ? 1_555 82.5 ? 14 N23 ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 C1A ? B CNC . ? A CNC 101 ? 1_555 84.7 ? 15 N24 ? B CNC . ? A CNC 101 ? 1_555 CO ? B CNC . ? A CNC 101 ? 1_555 C1A ? B CNC . ? A CNC 101 ? 1_555 91.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-21 2 'Structure model' 1 1 2016-10-12 3 'Structure model' 2 0 2021-08-18 4 'Structure model' 3 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Atomic model' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' database_2 3 3 'Structure model' entity 4 3 'Structure model' pdbx_entity_nonpoly 5 3 'Structure model' pdbx_nmr_software 6 3 'Structure model' pdbx_validate_chiral 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site 9 4 'Structure model' atom_site 10 4 'Structure model' chem_comp_atom 11 4 'Structure model' chem_comp_bond 12 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.formula' 2 3 'Structure model' '_chem_comp.formula_weight' 3 3 'Structure model' '_chem_comp.name' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' 6 3 'Structure model' '_entity.formula_weight' 7 3 'Structure model' '_entity.pdbx_description' 8 3 'Structure model' '_pdbx_entity_nonpoly.name' 9 3 'Structure model' '_pdbx_nmr_software.name' 10 3 'Structure model' '_struct_conn.pdbx_dist_value' 11 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 18 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 23 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 24 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 25 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 26 4 'Structure model' '_atom_site.auth_atom_id' 27 4 'Structure model' '_atom_site.label_atom_id' 28 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_entry_details.entry_id 2NA5 _pdbx_entry_details.nonpolymer_details ;THE DEPOSITORS STATE THAT WHILE ACTUALLY COVALENTLY LINKED BETWEEN THE VITAMIN B12 AND PYY3-36, THIS ENTRY DISPLAYS THE SYSTEM SEPARATED BETWEEN NZ2 AND C5R TO PRODUCE A SMALLER MODIFIED LYS AND AN ACIDIC VITAMIN B12 IN ACCORDANCE WITH PDB ANNOTATION POLICIES. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_nmr_exptl_sample.component 'vitamin B12 conjugate of PYY3-36-1' _pdbx_nmr_exptl_sample.concentration 1 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2NA5 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 179 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 104 _pdbx_nmr_constraints.NOE_long_range_total_count 5 _pdbx_nmr_constraints.NOE_medium_range_total_count 23 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 46 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 4QK A 4 ? ? -161.43 111.17 2 1 PRO A 6 ? ? -81.99 -159.49 3 1 PRO A 9 ? ? -81.03 -152.76 4 1 ASP A 12 ? ? -109.47 -77.13 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id ARG _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 34 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 12.25 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR A 21 ? ? 0.114 'SIDE CHAIN' 2 1 TYR A 22 ? ? 0.060 'SIDE CHAIN' 3 1 TYR A 28 ? ? 0.153 'SIDE CHAIN' # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id N24 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id CNC _pdbx_validate_chiral.auth_seq_id 101 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4QK N N N N 1 4QK CA C N S 2 4QK CB C N N 3 4QK CG C N N 4 4QK CD C N N 5 4QK CE C N N 6 4QK C C N N 7 4QK O O N N 8 4QK CZ C N N 9 4QK CY C N N 10 4QK CT1 C Y N 11 4QK CT2 C Y N 12 4QK NT1 N Y N 13 4QK NT2 N Y N 14 4QK NT3 N Y N 15 4QK NZ2 N N N 16 4QK H H N N 17 4QK H2 H N N 18 4QK HA H N N 19 4QK HC36 H N N 20 4QK HC35 H N N 21 4QK HC38 H N N 22 4QK HC37 H N N 23 4QK HC40 H N N 24 4QK HC39 H N N 25 4QK HC42 H N N 26 4QK HC41 H N N 27 4QK HC44 H N N 28 4QK HC43 H N N 29 4QK HC46 H N N 30 4QK HC45 H N N 31 4QK HC47 H N N 32 4QK HZ2 H N N 33 4QK H4 H N N 34 4QK OXT O N N 35 4QK HXT H N N 36 ALA N N N N 37 ALA CA C N S 38 ALA C C N N 39 ALA O O N N 40 ALA CB C N N 41 ALA OXT O N N 42 ALA H H N N 43 ALA H2 H N N 44 ALA HA H N N 45 ALA HB1 H N N 46 ALA HB2 H N N 47 ALA HB3 H N N 48 ALA HXT H N N 49 ARG N N N N 50 ARG CA C N S 51 ARG C C N N 52 ARG O O N N 53 ARG CB C N N 54 ARG CG C N N 55 ARG CD C N N 56 ARG NE N N N 57 ARG CZ C N N 58 ARG NH1 N N N 59 ARG NH2 N N N 60 ARG OXT O N N 61 ARG H H N N 62 ARG H2 H N N 63 ARG HA H N N 64 ARG HB2 H N N 65 ARG HB3 H N N 66 ARG HG2 H N N 67 ARG HG3 H N N 68 ARG HD2 H N N 69 ARG HD3 H N N 70 ARG HE H N N 71 ARG HH11 H N N 72 ARG HH12 H N N 73 ARG HH21 H N N 74 ARG HH22 H N N 75 ARG HXT H N N 76 ASN N N N N 77 ASN CA C N S 78 ASN C C N N 79 ASN O O N N 80 ASN CB C N N 81 ASN CG C N N 82 ASN OD1 O N N 83 ASN ND2 N N N 84 ASN OXT O N N 85 ASN H H N N 86 ASN H2 H N N 87 ASN HA H N N 88 ASN HB2 H N N 89 ASN HB3 H N N 90 ASN HD21 H N N 91 ASN HD22 H N N 92 ASN HXT H N N 93 ASP N N N N 94 ASP CA C N S 95 ASP C C N N 96 ASP O O N N 97 ASP CB C N N 98 ASP CG C N N 99 ASP OD1 O N N 100 ASP OD2 O N N 101 ASP OXT O N N 102 ASP H H N N 103 ASP H2 H N N 104 ASP HA H N N 105 ASP HB2 H N N 106 ASP HB3 H N N 107 ASP HD2 H N N 108 ASP HXT H N N 109 CNC CO CO N N 110 CNC N21 N N N 111 CNC N22 N N N 112 CNC N23 N N N 113 CNC N24 N N R 114 CNC C1 C N R 115 CNC C20 C N N 116 CNC C2 C N S 117 CNC C25 C N N 118 CNC C26 C N N 119 CNC C27 C N N 120 CNC O28 O N N 121 CNC N29 N N N 122 CNC C3 C N S 123 CNC C30 C N N 124 CNC C31 C N N 125 CNC C32 C N N 126 CNC O34 O N N 127 CNC N33 N N N 128 CNC C4 C N N 129 CNC C5 C N N 130 CNC C35 C N N 131 CNC C6 C N N 132 CNC C7 C N S 133 CNC C36 C N N 134 CNC C37 C N N 135 CNC C38 C N N 136 CNC O39 O N N 137 CNC N40 N N N 138 CNC C8 C N S 139 CNC C41 C N N 140 CNC C42 C N N 141 CNC C43 C N N 142 CNC O44 O N N 143 CNC N45 N N N 144 CNC C9 C N N 145 CNC C10 C N N 146 CNC C11 C N N 147 CNC C12 C N N 148 CNC C46 C N N 149 CNC C47 C N N 150 CNC C13 C N S 151 CNC C48 C N N 152 CNC C49 C N N 153 CNC C50 C N N 154 CNC O51 O N N 155 CNC N52 N N N 156 CNC C14 C N N 157 CNC C15 C N N 158 CNC C53 C N N 159 CNC C16 C N N 160 CNC C17 C N R 161 CNC C54 C N N 162 CNC C55 C N N 163 CNC C56 C N N 164 CNC C57 C N N 165 CNC O58 O N N 166 CNC N59 N N N 167 CNC C18 C N R 168 CNC C60 C N N 169 CNC C61 C N N 170 CNC O63 O N N 171 CNC N62 N N N 172 CNC C19 C N R 173 CNC C1P C N N 174 CNC C2P C N R 175 CNC C3P C N N 176 CNC O3 O N N 177 CNC O4 O N N 178 CNC O5 O N N 179 CNC P P N N 180 CNC O2 O N N 181 CNC C3R C N S 182 CNC C2R C N R 183 CNC O7R O N N 184 CNC C1R C N S 185 CNC O6R O N N 186 CNC C4R C N R 187 CNC C5R C N N 188 CNC O8R O N N 189 CNC N1B N Y N 190 CNC C8B C Y N 191 CNC C2B C Y N 192 CNC N3B N Y N 193 CNC C9B C Y N 194 CNC C4B C Y N 195 CNC C5B C Y N 196 CNC C5M C N N 197 CNC C6B C Y N 198 CNC C6M C N N 199 CNC C7B C Y N 200 CNC N1A N N N 201 CNC C1A C N N 202 CNC H201 H N N 203 CNC H202 H N N 204 CNC H203 H N N 205 CNC H251 H N N 206 CNC H252 H N N 207 CNC H253 H N N 208 CNC H261 H N N 209 CNC H262 H N N 210 CNC H291 H N N 211 CNC H292 H N N 212 CNC H3 H N N 213 CNC H301 H N N 214 CNC H302 H N N 215 CNC H311 H N N 216 CNC H312 H N N 217 CNC H331 H N N 218 CNC H332 H N N 219 CNC H351 H N N 220 CNC H352 H N N 221 CNC H353 H N N 222 CNC H361 H N N 223 CNC H362 H N N 224 CNC H363 H N N 225 CNC H371 H N N 226 CNC H372 H N N 227 CNC H401 H N N 228 CNC H402 H N N 229 CNC H8 H N N 230 CNC H411 H N N 231 CNC H412 H N N 232 CNC H421 H N N 233 CNC H422 H N N 234 CNC H451 H N N 235 CNC H452 H N N 236 CNC H10 H N N 237 CNC H461 H N N 238 CNC H462 H N N 239 CNC H463 H N N 240 CNC H471 H N N 241 CNC H472 H N N 242 CNC H473 H N N 243 CNC H13 H N N 244 CNC H481 H N N 245 CNC H482 H N N 246 CNC H491 H N N 247 CNC H492 H N N 248 CNC H521 H N N 249 CNC H522 H N N 250 CNC H531 H N N 251 CNC H532 H N N 252 CNC H533 H N N 253 CNC H541 H N N 254 CNC H542 H N N 255 CNC H543 H N N 256 CNC H551 H N N 257 CNC H552 H N N 258 CNC H561 H N N 259 CNC H562 H N N 260 CNC H59 H N N 261 CNC H18 H N N 262 CNC H601 H N N 263 CNC H602 H N N 264 CNC H621 H N N 265 CNC H622 H N N 266 CNC H1P1 H N N 267 CNC H1P2 H N N 268 CNC H2P H N N 269 CNC H3P1 H N N 270 CNC H3P2 H N N 271 CNC H3P3 H N N 272 CNC HOP5 H N N 273 CNC H3R H N N 274 CNC H2R H N N 275 CNC HOR7 H N N 276 CNC H1R H N N 277 CNC H4R H N N 278 CNC H5R1 H N N 279 CNC H5R2 H N N 280 CNC HOR8 H N N 281 CNC H2B H N N 282 CNC H4B H N N 283 CNC HM51 H N N 284 CNC HM52 H N N 285 CNC HM53 H N N 286 CNC HM61 H N N 287 CNC HM62 H N N 288 CNC HM63 H N N 289 CNC H7B H N N 290 CNC H1 H N N 291 GLN N N N N 292 GLN CA C N S 293 GLN C C N N 294 GLN O O N N 295 GLN CB C N N 296 GLN CG C N N 297 GLN CD C N N 298 GLN OE1 O N N 299 GLN NE2 N N N 300 GLN OXT O N N 301 GLN H H N N 302 GLN H2 H N N 303 GLN HA H N N 304 GLN HB2 H N N 305 GLN HB3 H N N 306 GLN HG2 H N N 307 GLN HG3 H N N 308 GLN HE21 H N N 309 GLN HE22 H N N 310 GLN HXT H N N 311 GLU N N N N 312 GLU CA C N S 313 GLU C C N N 314 GLU O O N N 315 GLU CB C N N 316 GLU CG C N N 317 GLU CD C N N 318 GLU OE1 O N N 319 GLU OE2 O N N 320 GLU OXT O N N 321 GLU H H N N 322 GLU H2 H N N 323 GLU HA H N N 324 GLU HB2 H N N 325 GLU HB3 H N N 326 GLU HG2 H N N 327 GLU HG3 H N N 328 GLU HE2 H N N 329 GLU HXT H N N 330 GLY N N N N 331 GLY CA C N N 332 GLY C C N N 333 GLY O O N N 334 GLY OXT O N N 335 GLY H H N N 336 GLY H2 H N N 337 GLY HA2 H N N 338 GLY HA3 H N N 339 GLY HXT H N N 340 HIS N N N N 341 HIS CA C N S 342 HIS C C N N 343 HIS O O N N 344 HIS CB C N N 345 HIS CG C Y N 346 HIS ND1 N Y N 347 HIS CD2 C Y N 348 HIS CE1 C Y N 349 HIS NE2 N Y N 350 HIS OXT O N N 351 HIS H H N N 352 HIS H2 H N N 353 HIS HA H N N 354 HIS HB2 H N N 355 HIS HB3 H N N 356 HIS HD1 H N N 357 HIS HD2 H N N 358 HIS HE1 H N N 359 HIS HE2 H N N 360 HIS HXT H N N 361 ILE N N N N 362 ILE CA C N S 363 ILE C C N N 364 ILE O O N N 365 ILE CB C N S 366 ILE CG1 C N N 367 ILE CG2 C N N 368 ILE CD1 C N N 369 ILE OXT O N N 370 ILE H H N N 371 ILE H2 H N N 372 ILE HA H N N 373 ILE HB H N N 374 ILE HG12 H N N 375 ILE HG13 H N N 376 ILE HG21 H N N 377 ILE HG22 H N N 378 ILE HG23 H N N 379 ILE HD11 H N N 380 ILE HD12 H N N 381 ILE HD13 H N N 382 ILE HXT H N N 383 LEU N N N N 384 LEU CA C N S 385 LEU C C N N 386 LEU O O N N 387 LEU CB C N N 388 LEU CG C N N 389 LEU CD1 C N N 390 LEU CD2 C N N 391 LEU OXT O N N 392 LEU H H N N 393 LEU H2 H N N 394 LEU HA H N N 395 LEU HB2 H N N 396 LEU HB3 H N N 397 LEU HG H N N 398 LEU HD11 H N N 399 LEU HD12 H N N 400 LEU HD13 H N N 401 LEU HD21 H N N 402 LEU HD22 H N N 403 LEU HD23 H N N 404 LEU HXT H N N 405 PRO N N N N 406 PRO CA C N S 407 PRO C C N N 408 PRO O O N N 409 PRO CB C N N 410 PRO CG C N N 411 PRO CD C N N 412 PRO OXT O N N 413 PRO H H N N 414 PRO HA H N N 415 PRO HB2 H N N 416 PRO HB3 H N N 417 PRO HG2 H N N 418 PRO HG3 H N N 419 PRO HD2 H N N 420 PRO HD3 H N N 421 PRO HXT H N N 422 SER N N N N 423 SER CA C N S 424 SER C C N N 425 SER O O N N 426 SER CB C N N 427 SER OG O N N 428 SER OXT O N N 429 SER H H N N 430 SER H2 H N N 431 SER HA H N N 432 SER HB2 H N N 433 SER HB3 H N N 434 SER HG H N N 435 SER HXT H N N 436 THR N N N N 437 THR CA C N S 438 THR C C N N 439 THR O O N N 440 THR CB C N R 441 THR OG1 O N N 442 THR CG2 C N N 443 THR OXT O N N 444 THR H H N N 445 THR H2 H N N 446 THR HA H N N 447 THR HB H N N 448 THR HG1 H N N 449 THR HG21 H N N 450 THR HG22 H N N 451 THR HG23 H N N 452 THR HXT H N N 453 TYR N N N N 454 TYR CA C N S 455 TYR C C N N 456 TYR O O N N 457 TYR CB C N N 458 TYR CG C Y N 459 TYR CD1 C Y N 460 TYR CD2 C Y N 461 TYR CE1 C Y N 462 TYR CE2 C Y N 463 TYR CZ C Y N 464 TYR OH O N N 465 TYR OXT O N N 466 TYR H H N N 467 TYR H2 H N N 468 TYR HA H N N 469 TYR HB2 H N N 470 TYR HB3 H N N 471 TYR HD1 H N N 472 TYR HD2 H N N 473 TYR HE1 H N N 474 TYR HE2 H N N 475 TYR HH H N N 476 TYR HXT H N N 477 VAL N N N N 478 VAL CA C N S 479 VAL C C N N 480 VAL O O N N 481 VAL CB C N N 482 VAL CG1 C N N 483 VAL CG2 C N N 484 VAL OXT O N N 485 VAL H H N N 486 VAL H2 H N N 487 VAL HA H N N 488 VAL HB H N N 489 VAL HG11 H N N 490 VAL HG12 H N N 491 VAL HG13 H N N 492 VAL HG21 H N N 493 VAL HG22 H N N 494 VAL HG23 H N N 495 VAL HXT H N N 496 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4QK O C doub N N 1 4QK C CA sing N N 2 4QK CA N sing N N 3 4QK CA CB sing N N 4 4QK CB CG sing N N 5 4QK CG CD sing N N 6 4QK CD CE sing N N 7 4QK CE NT1 sing N N 8 4QK NT2 NT1 sing Y N 9 4QK NT2 NT3 doub Y N 10 4QK NT1 CT2 sing Y N 11 4QK NT3 CT1 sing Y N 12 4QK CT2 CT1 doub Y N 13 4QK CT1 CY sing N N 14 4QK NZ2 CZ sing N N 15 4QK CY CZ sing N N 16 4QK N H sing N N 17 4QK N H2 sing N N 18 4QK CA HA sing N N 19 4QK CB HC36 sing N N 20 4QK CB HC35 sing N N 21 4QK CG HC38 sing N N 22 4QK CG HC37 sing N N 23 4QK CD HC40 sing N N 24 4QK CD HC39 sing N N 25 4QK CE HC42 sing N N 26 4QK CE HC41 sing N N 27 4QK CZ HC44 sing N N 28 4QK CZ HC43 sing N N 29 4QK CY HC46 sing N N 30 4QK CY HC45 sing N N 31 4QK CT2 HC47 sing N N 32 4QK NZ2 HZ2 sing N N 33 4QK NZ2 H4 sing N N 34 4QK C OXT sing N N 35 4QK OXT HXT sing N N 36 ALA N CA sing N N 37 ALA N H sing N N 38 ALA N H2 sing N N 39 ALA CA C sing N N 40 ALA CA CB sing N N 41 ALA CA HA sing N N 42 ALA C O doub N N 43 ALA C OXT sing N N 44 ALA CB HB1 sing N N 45 ALA CB HB2 sing N N 46 ALA CB HB3 sing N N 47 ALA OXT HXT sing N N 48 ARG N CA sing N N 49 ARG N H sing N N 50 ARG N H2 sing N N 51 ARG CA C sing N N 52 ARG CA CB sing N N 53 ARG CA HA sing N N 54 ARG C O doub N N 55 ARG C OXT sing N N 56 ARG CB CG sing N N 57 ARG CB HB2 sing N N 58 ARG CB HB3 sing N N 59 ARG CG CD sing N N 60 ARG CG HG2 sing N N 61 ARG CG HG3 sing N N 62 ARG CD NE sing N N 63 ARG CD HD2 sing N N 64 ARG CD HD3 sing N N 65 ARG NE CZ sing N N 66 ARG NE HE sing N N 67 ARG CZ NH1 sing N N 68 ARG CZ NH2 doub N N 69 ARG NH1 HH11 sing N N 70 ARG NH1 HH12 sing N N 71 ARG NH2 HH21 sing N N 72 ARG NH2 HH22 sing N N 73 ARG OXT HXT sing N N 74 ASN N CA sing N N 75 ASN N H sing N N 76 ASN N H2 sing N N 77 ASN CA C sing N N 78 ASN CA CB sing N N 79 ASN CA HA sing N N 80 ASN C O doub N N 81 ASN C OXT sing N N 82 ASN CB CG sing N N 83 ASN CB HB2 sing N N 84 ASN CB HB3 sing N N 85 ASN CG OD1 doub N N 86 ASN CG ND2 sing N N 87 ASN ND2 HD21 sing N N 88 ASN ND2 HD22 sing N N 89 ASN OXT HXT sing N N 90 ASP N CA sing N N 91 ASP N H sing N N 92 ASP N H2 sing N N 93 ASP CA C sing N N 94 ASP CA CB sing N N 95 ASP CA HA sing N N 96 ASP C O doub N N 97 ASP C OXT sing N N 98 ASP CB CG sing N N 99 ASP CB HB2 sing N N 100 ASP CB HB3 sing N N 101 ASP CG OD1 doub N N 102 ASP CG OD2 sing N N 103 ASP OD2 HD2 sing N N 104 ASP OXT HXT sing N N 105 CNC CO N21 sing N N 106 CNC CO N22 sing N N 107 CNC CO N23 sing N N 108 CNC CO N24 sing N N 109 CNC CO C1A sing N N 110 CNC N21 C1 sing N N 111 CNC N21 C4 doub N N 112 CNC N22 C6 sing N N 113 CNC N22 C9 doub N N 114 CNC N23 C11 sing N N 115 CNC N23 C14 doub N N 116 CNC N24 C16 sing N N 117 CNC N24 C19 sing N N 118 CNC C1 C20 sing N N 119 CNC C1 C2 sing N N 120 CNC C1 C19 sing N N 121 CNC C20 H201 sing N N 122 CNC C20 H202 sing N N 123 CNC C20 H203 sing N N 124 CNC C2 C25 sing N N 125 CNC C2 C26 sing N N 126 CNC C2 C3 sing N N 127 CNC C25 H251 sing N N 128 CNC C25 H252 sing N N 129 CNC C25 H253 sing N N 130 CNC C26 C27 sing N N 131 CNC C26 H261 sing N N 132 CNC C26 H262 sing N N 133 CNC C27 O28 doub N N 134 CNC C27 N29 sing N N 135 CNC N29 H291 sing N N 136 CNC N29 H292 sing N N 137 CNC C3 C30 sing N N 138 CNC C3 C4 sing N N 139 CNC C3 H3 sing N N 140 CNC C30 C31 sing N N 141 CNC C30 H301 sing N N 142 CNC C30 H302 sing N N 143 CNC C31 C32 sing N N 144 CNC C31 H311 sing N N 145 CNC C31 H312 sing N N 146 CNC C32 O34 doub N N 147 CNC C32 N33 sing N N 148 CNC N33 H331 sing N N 149 CNC N33 H332 sing N N 150 CNC C4 C5 sing N N 151 CNC C5 C35 sing N N 152 CNC C5 C6 doub N N 153 CNC C35 H351 sing N N 154 CNC C35 H352 sing N N 155 CNC C35 H353 sing N N 156 CNC C6 C7 sing N N 157 CNC C7 C36 sing N N 158 CNC C7 C37 sing N N 159 CNC C7 C8 sing N N 160 CNC C36 H361 sing N N 161 CNC C36 H362 sing N N 162 CNC C36 H363 sing N N 163 CNC C37 C38 sing N N 164 CNC C37 H371 sing N N 165 CNC C37 H372 sing N N 166 CNC C38 O39 doub N N 167 CNC C38 N40 sing N N 168 CNC N40 H401 sing N N 169 CNC N40 H402 sing N N 170 CNC C8 C41 sing N N 171 CNC C8 C9 sing N N 172 CNC C8 H8 sing N N 173 CNC C41 C42 sing N N 174 CNC C41 H411 sing N N 175 CNC C41 H412 sing N N 176 CNC C42 C43 sing N N 177 CNC C42 H421 sing N N 178 CNC C42 H422 sing N N 179 CNC C43 O44 doub N N 180 CNC C43 N45 sing N N 181 CNC N45 H451 sing N N 182 CNC N45 H452 sing N N 183 CNC C9 C10 sing N N 184 CNC C10 C11 doub N N 185 CNC C10 H10 sing N N 186 CNC C11 C12 sing N N 187 CNC C12 C46 sing N N 188 CNC C12 C47 sing N N 189 CNC C12 C13 sing N N 190 CNC C46 H461 sing N N 191 CNC C46 H462 sing N N 192 CNC C46 H463 sing N N 193 CNC C47 H471 sing N N 194 CNC C47 H472 sing N N 195 CNC C47 H473 sing N N 196 CNC C13 C48 sing N N 197 CNC C13 C14 sing N N 198 CNC C13 H13 sing N N 199 CNC C48 C49 sing N N 200 CNC C48 H481 sing N N 201 CNC C48 H482 sing N N 202 CNC C49 C50 sing N N 203 CNC C49 H491 sing N N 204 CNC C49 H492 sing N N 205 CNC C50 O51 doub N N 206 CNC C50 N52 sing N N 207 CNC N52 H521 sing N N 208 CNC N52 H522 sing N N 209 CNC C14 C15 sing N N 210 CNC C15 C53 sing N N 211 CNC C15 C16 doub N N 212 CNC C53 H531 sing N N 213 CNC C53 H532 sing N N 214 CNC C53 H533 sing N N 215 CNC C16 C17 sing N N 216 CNC C17 C54 sing N N 217 CNC C17 C55 sing N N 218 CNC C17 C18 sing N N 219 CNC C54 H541 sing N N 220 CNC C54 H542 sing N N 221 CNC C54 H543 sing N N 222 CNC C55 C56 sing N N 223 CNC C55 H551 sing N N 224 CNC C55 H552 sing N N 225 CNC C56 C57 sing N N 226 CNC C56 H561 sing N N 227 CNC C56 H562 sing N N 228 CNC C57 O58 doub N N 229 CNC C57 N59 sing N N 230 CNC N59 C1P sing N N 231 CNC N59 H59 sing N N 232 CNC C18 C60 sing N N 233 CNC C18 C19 sing N N 234 CNC C18 H18 sing N N 235 CNC C60 C61 sing N N 236 CNC C60 H601 sing N N 237 CNC C60 H602 sing N N 238 CNC C61 O63 doub N N 239 CNC C61 N62 sing N N 240 CNC N62 H621 sing N N 241 CNC N62 H622 sing N N 242 CNC C1P C2P sing N N 243 CNC C1P H1P1 sing N N 244 CNC C1P H1P2 sing N N 245 CNC C2P C3P sing N N 246 CNC C2P O3 sing N N 247 CNC C2P H2P sing N N 248 CNC C3P H3P1 sing N N 249 CNC C3P H3P2 sing N N 250 CNC C3P H3P3 sing N N 251 CNC O3 P sing N N 252 CNC O4 P doub N N 253 CNC O5 P sing N N 254 CNC O5 HOP5 sing N N 255 CNC P O2 sing N N 256 CNC O2 C3R sing N N 257 CNC C3R C2R sing N N 258 CNC C3R C4R sing N N 259 CNC C3R H3R sing N N 260 CNC C2R O7R sing N N 261 CNC C2R C1R sing N N 262 CNC C2R H2R sing N N 263 CNC O7R HOR7 sing N N 264 CNC C1R O6R sing N N 265 CNC C1R N1B sing N N 266 CNC C1R H1R sing N N 267 CNC O6R C4R sing N N 268 CNC C4R C5R sing N N 269 CNC C4R H4R sing N N 270 CNC C5R O8R sing N N 271 CNC C5R H5R1 sing N N 272 CNC C5R H5R2 sing N N 273 CNC O8R HOR8 sing N N 274 CNC N1B C8B sing Y N 275 CNC N1B C2B sing Y N 276 CNC C8B C9B doub Y N 277 CNC C8B C7B sing Y N 278 CNC C2B N3B doub Y N 279 CNC C2B H2B sing N N 280 CNC N3B C9B sing Y N 281 CNC C9B C4B sing Y N 282 CNC C4B C5B doub Y N 283 CNC C4B H4B sing N N 284 CNC C5B C5M sing N N 285 CNC C5B C6B sing Y N 286 CNC C5M HM51 sing N N 287 CNC C5M HM52 sing N N 288 CNC C5M HM53 sing N N 289 CNC C6B C6M sing N N 290 CNC C6B C7B doub Y N 291 CNC C6M HM61 sing N N 292 CNC C6M HM62 sing N N 293 CNC C6M HM63 sing N N 294 CNC C7B H7B sing N N 295 CNC N1A C1A trip N N 296 CNC C19 H1 sing N N 297 GLN N CA sing N N 298 GLN N H sing N N 299 GLN N H2 sing N N 300 GLN CA C sing N N 301 GLN CA CB sing N N 302 GLN CA HA sing N N 303 GLN C O doub N N 304 GLN C OXT sing N N 305 GLN CB CG sing N N 306 GLN CB HB2 sing N N 307 GLN CB HB3 sing N N 308 GLN CG CD sing N N 309 GLN CG HG2 sing N N 310 GLN CG HG3 sing N N 311 GLN CD OE1 doub N N 312 GLN CD NE2 sing N N 313 GLN NE2 HE21 sing N N 314 GLN NE2 HE22 sing N N 315 GLN OXT HXT sing N N 316 GLU N CA sing N N 317 GLU N H sing N N 318 GLU N H2 sing N N 319 GLU CA C sing N N 320 GLU CA CB sing N N 321 GLU CA HA sing N N 322 GLU C O doub N N 323 GLU C OXT sing N N 324 GLU CB CG sing N N 325 GLU CB HB2 sing N N 326 GLU CB HB3 sing N N 327 GLU CG CD sing N N 328 GLU CG HG2 sing N N 329 GLU CG HG3 sing N N 330 GLU CD OE1 doub N N 331 GLU CD OE2 sing N N 332 GLU OE2 HE2 sing N N 333 GLU OXT HXT sing N N 334 GLY N CA sing N N 335 GLY N H sing N N 336 GLY N H2 sing N N 337 GLY CA C sing N N 338 GLY CA HA2 sing N N 339 GLY CA HA3 sing N N 340 GLY C O doub N N 341 GLY C OXT sing N N 342 GLY OXT HXT sing N N 343 HIS N CA sing N N 344 HIS N H sing N N 345 HIS N H2 sing N N 346 HIS CA C sing N N 347 HIS CA CB sing N N 348 HIS CA HA sing N N 349 HIS C O doub N N 350 HIS C OXT sing N N 351 HIS CB CG sing N N 352 HIS CB HB2 sing N N 353 HIS CB HB3 sing N N 354 HIS CG ND1 sing Y N 355 HIS CG CD2 doub Y N 356 HIS ND1 CE1 doub Y N 357 HIS ND1 HD1 sing N N 358 HIS CD2 NE2 sing Y N 359 HIS CD2 HD2 sing N N 360 HIS CE1 NE2 sing Y N 361 HIS CE1 HE1 sing N N 362 HIS NE2 HE2 sing N N 363 HIS OXT HXT sing N N 364 ILE N CA sing N N 365 ILE N H sing N N 366 ILE N H2 sing N N 367 ILE CA C sing N N 368 ILE CA CB sing N N 369 ILE CA HA sing N N 370 ILE C O doub N N 371 ILE C OXT sing N N 372 ILE CB CG1 sing N N 373 ILE CB CG2 sing N N 374 ILE CB HB sing N N 375 ILE CG1 CD1 sing N N 376 ILE CG1 HG12 sing N N 377 ILE CG1 HG13 sing N N 378 ILE CG2 HG21 sing N N 379 ILE CG2 HG22 sing N N 380 ILE CG2 HG23 sing N N 381 ILE CD1 HD11 sing N N 382 ILE CD1 HD12 sing N N 383 ILE CD1 HD13 sing N N 384 ILE OXT HXT sing N N 385 LEU N CA sing N N 386 LEU N H sing N N 387 LEU N H2 sing N N 388 LEU CA C sing N N 389 LEU CA CB sing N N 390 LEU CA HA sing N N 391 LEU C O doub N N 392 LEU C OXT sing N N 393 LEU CB CG sing N N 394 LEU CB HB2 sing N N 395 LEU CB HB3 sing N N 396 LEU CG CD1 sing N N 397 LEU CG CD2 sing N N 398 LEU CG HG sing N N 399 LEU CD1 HD11 sing N N 400 LEU CD1 HD12 sing N N 401 LEU CD1 HD13 sing N N 402 LEU CD2 HD21 sing N N 403 LEU CD2 HD22 sing N N 404 LEU CD2 HD23 sing N N 405 LEU OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 THR N CA sing N N 437 THR N H sing N N 438 THR N H2 sing N N 439 THR CA C sing N N 440 THR CA CB sing N N 441 THR CA HA sing N N 442 THR C O doub N N 443 THR C OXT sing N N 444 THR CB OG1 sing N N 445 THR CB CG2 sing N N 446 THR CB HB sing N N 447 THR OG1 HG1 sing N N 448 THR CG2 HG21 sing N N 449 THR CG2 HG22 sing N N 450 THR CG2 HG23 sing N N 451 THR OXT HXT sing N N 452 TYR N CA sing N N 453 TYR N H sing N N 454 TYR N H2 sing N N 455 TYR CA C sing N N 456 TYR CA CB sing N N 457 TYR CA HA sing N N 458 TYR C O doub N N 459 TYR C OXT sing N N 460 TYR CB CG sing N N 461 TYR CB HB2 sing N N 462 TYR CB HB3 sing N N 463 TYR CG CD1 doub Y N 464 TYR CG CD2 sing Y N 465 TYR CD1 CE1 sing Y N 466 TYR CD1 HD1 sing N N 467 TYR CD2 CE2 doub Y N 468 TYR CD2 HD2 sing N N 469 TYR CE1 CZ doub Y N 470 TYR CE1 HE1 sing N N 471 TYR CE2 CZ sing Y N 472 TYR CE2 HE2 sing N N 473 TYR CZ OH sing N N 474 TYR OH HH sing N N 475 TYR OXT HXT sing N N 476 VAL N CA sing N N 477 VAL N H sing N N 478 VAL N H2 sing N N 479 VAL CA C sing N N 480 VAL CA CB sing N N 481 VAL CA HA sing N N 482 VAL C O doub N N 483 VAL C OXT sing N N 484 VAL CB CG1 sing N N 485 VAL CB CG2 sing N N 486 VAL CB HB sing N N 487 VAL CG1 HG11 sing N N 488 VAL CG1 HG12 sing N N 489 VAL CG1 HG13 sing N N 490 VAL CG2 HG21 sing N N 491 VAL CG2 HG22 sing N N 492 VAL CG2 HG23 sing N N 493 VAL OXT HXT sing N N 494 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name CYANOCOBALAMIN _pdbx_entity_nonpoly.comp_id CNC #