HEADER OXIDOREDUCTASE(ALDEHYDE(D),NAD+(A)) 06-JUL-94 2NAD TITLE HIGH RESOLUTION STRUCTURES OF HOLO AND APO FORMATE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT FORMATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 33067; SOURCE 4 STRAIN: 101 KEYWDS OXIDOREDUCTASE(ALDEHYDE(D), NAD+(A)) EXPDTA X-RAY DIFFRACTION AUTHOR V.S.LAMZIN,Z.DAUTER,V.O.POPOV,E.H.HARUTYUNYAN,K.S.WILSON REVDAT 4 21-FEB-24 2NAD 1 REMARK REVDAT 3 13-JUL-11 2NAD 1 VERSN REVDAT 2 24-FEB-09 2NAD 1 VERSN REVDAT 1 26-JAN-95 2NAD 0 JRNL AUTH V.S.LAMZIN,Z.DAUTER,V.O.POPOV,E.H.HARUTYUNYAN,K.S.WILSON JRNL TITL HIGH RESOLUTION STRUCTURES OF HOLO AND APO FORMATE JRNL TITL 2 DEHYDROGENASE. JRNL REF J.MOL.BIOL. V. 236 759 1994 JRNL REFN ISSN 0022-2836 JRNL PMID 8114093 JRNL DOI 10.1006/JMBI.1994.1188 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.S.LAMZIN,A.E.ALESHIN,B.V.STROKOPYTOV,M.G.YUKHNEVICH, REMARK 1 AUTH 2 V.O.POPOV,E.H.HARUTYUNYAN,K.S.WILSON REMARK 1 TITL CRYSTAL STRUCTURE OF NAD-DEPENDENT FORMATE DEHYDROGENASE REMARK 1 REF EUR.J.BIOCHEM. V. 206 441 1992 REMARK 1 REFN ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 50775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.114 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6013 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 831 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.017 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.045 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.047 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.016 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.168 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.181 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.252 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.216 ; 0.300 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.930 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 15.410; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.590 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.270 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.830 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.950 ; 5.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 57.98500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.98500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR CHAIN *B* WHEN APPLIED TO REMARK 300 CHAIN *A*. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 392 REMARK 465 ALA A 393 REMARK 465 GLY B 384 REMARK 465 ASN B 385 REMARK 465 ALA B 386 REMARK 465 THR B 387 REMARK 465 GLY B 388 REMARK 465 GLY B 389 REMARK 465 SER B 390 REMARK 465 GLU B 391 REMARK 465 GLU B 392 REMARK 465 ALA B 393 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 488 O HOH B 711 2.04 REMARK 500 O HOH A 487 O HOH A 754 2.05 REMARK 500 O HOH A 523 O HOH B 686 2.06 REMARK 500 O HOH A 622 O HOH A 737 2.10 REMARK 500 O HOH B 600 O HOH B 618 2.11 REMARK 500 O HOH A 524 O HOH A 769 2.12 REMARK 500 O HOH A 504 O HOH B 773 2.13 REMARK 500 OE2 GLU A 357 O HOH A 582 2.18 REMARK 500 O HOH B 556 O HOH B 664 2.18 REMARK 500 O HOH B 536 O HOH B 585 2.19 REMARK 500 O HOH B 587 O HOH B 599 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 798 O HOH B 607 3655 2.00 REMARK 500 O HOH A 613 O HOH B 577 3655 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 9 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 23 CB - CA - C ANGL. DEV. = -22.9 DEGREES REMARK 500 ASP A 23 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG A 60 CD - NE - CZ ANGL. DEV. = 8.4 DEGREES REMARK 500 HIS A 68 CE1 - NE2 - CD2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ASP A 80 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 SER A 95 N - CA - CB ANGL. DEV. = 9.9 DEGREES REMARK 500 ASP A 128 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 TYR A 144 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 163 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 201 NE - CZ - NH1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 201 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 209 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TYR A 219 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 222 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 224 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 241 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 GLU A 242 OE1 - CD - OE2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP A 243 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 HIS A 258 CB - CA - C ANGL. DEV. = 13.6 DEGREES REMARK 500 ASP A 267 CB - CG - OD2 ANGL. DEV. = -9.1 DEGREES REMARK 500 LYS A 274 CA - CB - CG ANGL. DEV. = 21.1 DEGREES REMARK 500 ARG A 284 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 290 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 GLU A 298 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 GLU A 298 OE1 - CD - OE2 ANGL. DEV. = -9.4 DEGREES REMARK 500 GLU A 298 CG - CD - OE1 ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG A 301 CD - NE - CZ ANGL. DEV. = 25.3 DEGREES REMARK 500 ARG A 301 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ASP A 318 CB - CG - OD1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 322 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 322 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 MET A 329 CA - CB - CG ANGL. DEV. = 12.4 DEGREES REMARK 500 TYR A 344 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 TYR A 344 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 349 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 GLU A 364 OE1 - CD - OE2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG B 21 NH1 - CZ - NH2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG B 21 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP B 23 CB - CG - OD1 ANGL. DEV. = 15.5 DEGREES REMARK 500 ASP B 23 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP B 28 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 43 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG B 60 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 60 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 GLU B 64 OE1 - CD - OE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 93 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 44.89 -105.37 REMARK 500 TRP A 99 71.00 -152.85 REMARK 500 THR A 143 133.61 -37.66 REMARK 500 TYR A 144 -5.56 70.38 REMARK 500 TRP A 177 -76.79 -139.01 REMARK 500 ALA A 198 140.13 85.76 REMARK 500 ALA A 283 -82.19 -86.58 REMARK 500 LEU B 57 18.10 59.94 REMARK 500 TRP B 99 76.60 -155.91 REMARK 500 TYR B 144 -6.71 76.00 REMARK 500 TRP B 177 -72.77 -140.93 REMARK 500 GLU B 190 123.98 -38.98 REMARK 500 ALA B 198 142.18 96.98 REMARK 500 ALA B 283 -78.23 -91.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI B 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 394 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE ADVISORY NOTICE REMARK 999 DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. REMARK 999 REMARK 999 SWISS-PROT ENTRY NAME: FDH_PSESR REMARK 999 REMARK 999 SWISS-PROT RESIDUE PDB SEQRES REMARK 999 REMARK 999 NAME NUMBER NAME CHAIN SEQ/INSERT CODE REMARK 999 SER 77 ASP A 77 REMARK 999 VAL 138 THR A 138 REMARK 999 THR 139 VAL A 139 REMARK 999 VAL 145 CYS A 145 REMARK 999 HIS 215 VAL A 215 REMARK 999 VAL 216 HIS A 216 REMARK 999 ASP 327 ASN A 327 REMARK 999 SER 77 ASP B 77 REMARK 999 VAL 138 THR B 138 REMARK 999 THR 139 VAL B 139 REMARK 999 VAL 145 CYS B 145 REMARK 999 HIS 215 VAL B 215 REMARK 999 VAL 216 HIS B 216 REMARK 999 ASP 327 ASN B 327 REMARK 999 REMARK 999 THERE IS ALSO THE GENE SEQUENCE OF THE PSEUDOMONAS SP. REMARK 999 101 FORMATE DEHYDROGENASE AVAILABLE (TISHKOV ET AL., 1991, REMARK 999 DOKL. ACAD. NAUK USSR (USSR), 317, 745 - 748), WHICH REMARK 999 AGREES WITH THE COORDINATE SET. THIS HAS BEEN DISCUSSED IN REMARK 999 THE PAPER CITED ON JRNL RECORDS. DBREF 2NAD A 1 393 UNP P33160 FDH_PSESR 1 393 DBREF 2NAD B 1 393 UNP P33160 FDH_PSESR 1 393 SEQRES 1 A 393 ALA LYS VAL LEU CYS VAL LEU TYR ASP ASP PRO VAL ASP SEQRES 2 A 393 GLY TYR PRO LYS THR TYR ALA ARG ASP ASP LEU PRO LYS SEQRES 3 A 393 ILE ASP HIS TYR PRO GLY GLY GLN THR LEU PRO THR PRO SEQRES 4 A 393 LYS ALA ILE ASP PHE THR PRO GLY GLN LEU LEU GLY SER SEQRES 5 A 393 VAL SER GLY GLU LEU GLY LEU ARG LYS TYR LEU GLU SER SEQRES 6 A 393 ASN GLY HIS THR LEU VAL VAL THR SER ASP LYS ASP GLY SEQRES 7 A 393 PRO ASP SER VAL PHE GLU ARG GLU LEU VAL ASP ALA ASP SEQRES 8 A 393 VAL VAL ILE SER GLN PRO PHE TRP PRO ALA TYR LEU THR SEQRES 9 A 393 PRO GLU ARG ILE ALA LYS ALA LYS ASN LEU LYS LEU ALA SEQRES 10 A 393 LEU THR ALA GLY ILE GLY SER ASP HIS VAL ASP LEU GLN SEQRES 11 A 393 SER ALA ILE ASP ARG ASN VAL THR VAL ALA GLU VAL THR SEQRES 12 A 393 TYR CYS ASN SER ILE SER VAL ALA GLU HIS VAL VAL MET SEQRES 13 A 393 MET ILE LEU SER LEU VAL ARG ASN TYR LEU PRO SER HIS SEQRES 14 A 393 GLU TRP ALA ARG LYS GLY GLY TRP ASN ILE ALA ASP CYS SEQRES 15 A 393 VAL SER HIS ALA TYR ASP LEU GLU ALA MET HIS VAL GLY SEQRES 16 A 393 THR VAL ALA ALA GLY ARG ILE GLY LEU ALA VAL LEU ARG SEQRES 17 A 393 ARG LEU ALA PRO PHE ASP VAL HIS LEU HIS TYR THR ASP SEQRES 18 A 393 ARG HIS ARG LEU PRO GLU SER VAL GLU LYS GLU LEU ASN SEQRES 19 A 393 LEU THR TRP HIS ALA THR ARG GLU ASP MET TYR PRO VAL SEQRES 20 A 393 CYS ASP VAL VAL THR LEU ASN CYS PRO LEU HIS PRO GLU SEQRES 21 A 393 THR GLU HIS MET ILE ASN ASP GLU THR LEU LYS LEU PHE SEQRES 22 A 393 LYS ARG GLY ALA TYR ILE VAL ASN THR ALA ARG GLY LYS SEQRES 23 A 393 LEU CYS ASP ARG ASP ALA VAL ALA ARG ALA LEU GLU SER SEQRES 24 A 393 GLY ARG LEU ALA GLY TYR ALA GLY ASP VAL TRP PHE PRO SEQRES 25 A 393 GLN PRO ALA PRO LYS ASP HIS PRO TRP ARG THR MET PRO SEQRES 26 A 393 TYR ASN GLY MET THR PRO HIS ILE SER GLY THR THR LEU SEQRES 27 A 393 THR ALA GLN ALA ARG TYR ALA ALA GLY THR ARG GLU ILE SEQRES 28 A 393 LEU GLU CYS PHE PHE GLU GLY ARG PRO ILE ARG ASP GLU SEQRES 29 A 393 TYR LEU ILE VAL GLN GLY GLY ALA LEU ALA GLY THR GLY SEQRES 30 A 393 ALA HIS SER TYR SER LYS GLY ASN ALA THR GLY GLY SER SEQRES 31 A 393 GLU GLU ALA SEQRES 1 B 393 ALA LYS VAL LEU CYS VAL LEU TYR ASP ASP PRO VAL ASP SEQRES 2 B 393 GLY TYR PRO LYS THR TYR ALA ARG ASP ASP LEU PRO LYS SEQRES 3 B 393 ILE ASP HIS TYR PRO GLY GLY GLN THR LEU PRO THR PRO SEQRES 4 B 393 LYS ALA ILE ASP PHE THR PRO GLY GLN LEU LEU GLY SER SEQRES 5 B 393 VAL SER GLY GLU LEU GLY LEU ARG LYS TYR LEU GLU SER SEQRES 6 B 393 ASN GLY HIS THR LEU VAL VAL THR SER ASP LYS ASP GLY SEQRES 7 B 393 PRO ASP SER VAL PHE GLU ARG GLU LEU VAL ASP ALA ASP SEQRES 8 B 393 VAL VAL ILE SER GLN PRO PHE TRP PRO ALA TYR LEU THR SEQRES 9 B 393 PRO GLU ARG ILE ALA LYS ALA LYS ASN LEU LYS LEU ALA SEQRES 10 B 393 LEU THR ALA GLY ILE GLY SER ASP HIS VAL ASP LEU GLN SEQRES 11 B 393 SER ALA ILE ASP ARG ASN VAL THR VAL ALA GLU VAL THR SEQRES 12 B 393 TYR CYS ASN SER ILE SER VAL ALA GLU HIS VAL VAL MET SEQRES 13 B 393 MET ILE LEU SER LEU VAL ARG ASN TYR LEU PRO SER HIS SEQRES 14 B 393 GLU TRP ALA ARG LYS GLY GLY TRP ASN ILE ALA ASP CYS SEQRES 15 B 393 VAL SER HIS ALA TYR ASP LEU GLU ALA MET HIS VAL GLY SEQRES 16 B 393 THR VAL ALA ALA GLY ARG ILE GLY LEU ALA VAL LEU ARG SEQRES 17 B 393 ARG LEU ALA PRO PHE ASP VAL HIS LEU HIS TYR THR ASP SEQRES 18 B 393 ARG HIS ARG LEU PRO GLU SER VAL GLU LYS GLU LEU ASN SEQRES 19 B 393 LEU THR TRP HIS ALA THR ARG GLU ASP MET TYR PRO VAL SEQRES 20 B 393 CYS ASP VAL VAL THR LEU ASN CYS PRO LEU HIS PRO GLU SEQRES 21 B 393 THR GLU HIS MET ILE ASN ASP GLU THR LEU LYS LEU PHE SEQRES 22 B 393 LYS ARG GLY ALA TYR ILE VAL ASN THR ALA ARG GLY LYS SEQRES 23 B 393 LEU CYS ASP ARG ASP ALA VAL ALA ARG ALA LEU GLU SER SEQRES 24 B 393 GLY ARG LEU ALA GLY TYR ALA GLY ASP VAL TRP PHE PRO SEQRES 25 B 393 GLN PRO ALA PRO LYS ASP HIS PRO TRP ARG THR MET PRO SEQRES 26 B 393 TYR ASN GLY MET THR PRO HIS ILE SER GLY THR THR LEU SEQRES 27 B 393 THR ALA GLN ALA ARG TYR ALA ALA GLY THR ARG GLU ILE SEQRES 28 B 393 LEU GLU CYS PHE PHE GLU GLY ARG PRO ILE ARG ASP GLU SEQRES 29 B 393 TYR LEU ILE VAL GLN GLY GLY ALA LEU ALA GLY THR GLY SEQRES 30 B 393 ALA HIS SER TYR SER LYS GLY ASN ALA THR GLY GLY SER SEQRES 31 B 393 GLU GLU ALA HET AZI A 395 3 HET SO4 A 396 5 HET NAD A 394 44 HET AZI B 395 3 HET NAD B 394 44 HETNAM AZI AZIDE ION HETNAM SO4 SULFATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 AZI 2(N3 1-) FORMUL 4 SO4 O4 S 2- FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 8 HOH *831(H2 O) HELIX 1 H1A GLY A 55 LEU A 59 5LEFT-HANDED 5 HELIX 2 H1 LEU A 59 GLY A 67 13/10 FOR RES 63 - 67 9 HELIX 3 H2 SER A 81 LEU A 87 1 7 HELIX 4 H3 THR A 104 ALA A 111 1 8 HELIX 5 H4 ASP A 128 ASN A 136 1 9 HELIX 6 HA ASN A 146 ARG A 163 1 18 HELIX 7 H5 TYR A 165 GLY A 175 1 11 HELIX 8 H6 ASN A 178 SER A 184 1 7 HELIX 9 HB GLY A 200 ASP A 214 13/10 FOR RES 210 - 214 15 HELIX 10 HC PRO A 226 ASN A 234 1 9 HELIX 11 H7 ARG A 241 CYS A 248 13/10 FOR RES 244 - 248 8 HELIX 12 HD HIS A 258 GLU A 262 1 5 HELIX 13 HE ASN A 266 PHE A 273 13/10 FOR RES 269 - 273 8 HELIX 14 HFA ARG A 284 CYS A 288 5 5 HELIX 15 HF ASP A 289 GLY A 300 1 12 HELIX 16 HG HIS A 319 MET A 324 5ALPHA FOR RES 320 - 324 6 HELIX 17 H8 THR A 337 GLY A 358 1 22 HELIX 18 H9A ARG A 362 LEU A 366 5 5 HELIX 19 H9 GLY A 375 TYR A 381 1 7 HELIX 20 H1A GLY B 55 LEU B 59 5LEFT-HANDED 5 HELIX 21 H1 LEU B 59 GLY B 67 13/10 FOR RES 63 - 67 9 HELIX 22 H2 SER B 81 LEU B 87 1 7 HELIX 23 H3 THR B 104 ALA B 111 1 8 HELIX 24 H4 ASP B 128 ASN B 136 1 9 HELIX 25 HA ASN B 146 ARG B 163 1 18 HELIX 26 H5 TYR B 165 GLY B 175 1 11 HELIX 27 H6 ASN B 178 SER B 184 1 7 HELIX 28 HB GLY B 200 ASP B 214 13/10 FOR RES 210 - 214 15 HELIX 29 HC PRO B 226 ASN B 234 1 9 HELIX 30 H7 ARG B 241 CYS B 248 13/10 FOR RES 244 - 248 8 HELIX 31 HD HIS B 258 GLU B 262 1 5 HELIX 32 HE ASN B 266 PHE B 273 13/10 FOR RES 269 - 273 8 HELIX 33 HFA ARG B 284 CYS B 288 5 5 HELIX 34 HF ASP B 289 GLY B 300 1 12 HELIX 35 HG HIS B 319 MET B 324 5ALPHA FOR RES 320 - 324 6 HELIX 36 H8 THR B 337 GLY B 358 1 22 HELIX 37 H9A ARG B 362 LEU B 366 5 5 HELIX 38 H9 GLY B 375 TYR B 381 1 7 SHEET 1 S1A 7 THR A 69 THR A 73 0 SHEET 2 S1A 7 ALA A 1 LEU A 7 1 SHEET 3 S1A 7 ASP A 91 SER A 95 1 SHEET 4 S1A 7 LYS A 115 ALA A 120 1 SHEET 5 S1A 7 THR A 138 GLU A 141 1 SHEET 6 S1A 7 ILE A 367 GLN A 369 -1 SHEET 7 S1A 7 ALA A 372 ALA A 374 -1 SHEET 1 S2A 7 THR A 236 HIS A 238 0 SHEET 2 S2A 7 HIS A 216 THR A 220 1 SHEET 3 S2A 7 MET A 192 ALA A 198 1 SHEET 4 S2A 7 ASP A 249 ASN A 254 1 SHEET 5 S2A 7 TYR A 278 ASN A 281 1 SHEET 6 S2A 7 GLY A 304 GLY A 307 1 SHEET 7 S2A 7 TYR A 326 THR A 330 1 SHEET 1 S1B 7 THR B 69 THR B 73 0 SHEET 2 S1B 7 ALA B 1 LEU B 7 1 SHEET 3 S1B 7 ASP B 91 SER B 95 1 SHEET 4 S1B 7 LYS B 115 ALA B 120 1 SHEET 5 S1B 7 THR B 138 GLU B 141 1 SHEET 6 S1B 7 ILE B 367 GLN B 369 -1 SHEET 7 S1B 7 ALA B 372 ALA B 374 -1 SHEET 1 S2B 7 THR B 236 HIS B 238 0 SHEET 2 S2B 7 HIS B 216 THR B 220 1 SHEET 3 S2B 7 MET B 192 ALA B 198 1 SHEET 4 S2B 7 ASP B 249 ASN B 254 1 SHEET 5 S2B 7 TYR B 278 ASN B 281 1 SHEET 6 S2B 7 GLY B 304 GLY B 307 1 SHEET 7 S2B 7 TYR B 326 THR B 330 1 CISPEP 1 PHE A 311 PRO A 312 0 -1.71 CISPEP 2 GLN A 313 PRO A 314 0 1.51 CISPEP 3 PHE B 311 PRO B 312 0 -2.86 CISPEP 4 GLN B 313 PRO B 314 0 0.90 SITE 1 AC1 8 PRO A 97 PHE A 98 GLY A 121 ILE A 122 SITE 2 AC1 8 ASN A 146 ARG A 284 HIS A 332 NAD A 394 SITE 1 AC2 8 HOH A 523 HIS B 263 LYS B 286 CYS B 288 SITE 2 AC2 8 ASP B 289 ARG B 290 HOH B 448 HOH B 675 SITE 1 AC3 7 PRO B 97 PHE B 98 ILE B 122 ASN B 146 SITE 2 AC3 7 ARG B 284 HIS B 332 NAD B 394 SITE 1 AC4 35 PHE A 98 ILE A 122 ASN A 146 SER A 147 SITE 2 AC4 35 VAL A 150 ALA A 198 GLY A 200 ARG A 201 SITE 3 AC4 35 ILE A 202 ASP A 221 ARG A 222 HIS A 223 SITE 4 AC4 35 ASN A 254 PRO A 256 HIS A 258 GLU A 260 SITE 5 AC4 35 THR A 261 THR A 282 ALA A 283 ARG A 284 SITE 6 AC4 35 ASP A 308 VAL A 309 HIS A 332 SER A 334 SITE 7 AC4 35 GLY A 335 SER A 380 TYR A 381 AZI A 395 SITE 8 AC4 35 HOH A 409 HOH A 412 HOH A 425 HOH A 453 SITE 9 AC4 35 HOH A 460 HOH A 499 HOH A 578 SITE 1 AC5 35 PHE B 98 ILE B 122 ASN B 146 SER B 147 SITE 2 AC5 35 VAL B 150 ALA B 198 GLY B 200 ARG B 201 SITE 3 AC5 35 ILE B 202 ASP B 221 ARG B 222 HIS B 223 SITE 4 AC5 35 ASN B 254 PRO B 256 HIS B 258 GLU B 260 SITE 5 AC5 35 THR B 261 THR B 282 ALA B 283 ARG B 284 SITE 6 AC5 35 ASP B 308 HIS B 332 SER B 334 GLY B 335 SITE 7 AC5 35 SER B 380 TYR B 381 AZI B 395 HOH B 397 SITE 8 AC5 35 HOH B 398 HOH B 399 HOH B 400 HOH B 426 SITE 9 AC5 35 HOH B 436 HOH B 495 HOH B 575 CRYST1 115.970 113.290 63.400 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008623 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015773 0.00000 MTRIX1 1 -0.714860 -0.627830 -0.307900 98.65300 1 MTRIX2 1 -0.625880 0.378110 0.682130 38.40600 1 MTRIX3 1 -0.311840 0.680340 -0.663250 13.06300 1