HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-FEB-16 2NBB TITLE NMR STRUCTURE OF THE ACIDIC DOMAIN OF SYNCRIP (24-140) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HNRNP Q, GLYCINE- AND TYROSINE-RICH RNA-BINDING PROTEIN, COMPND 5 GRY-RBP, NS1-ASSOCIATED PROTEIN 1, SYNAPTOTAGMIN-BINDING, CYTOPLASMIC COMPND 6 RNA-INTERACTING PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SYNCRIP, HNRPQ, NSAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS ACIDIC DOMAIN, SYNCRIP, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI- KEYWDS 2 BIOLOGY, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PARTNERSHIP FOR KEYWDS 3 T-CELL BIOLOGY, TCELL EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR P.SERRANO,K.WUTHRICH,C.BEUCK,JOINT CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 (JCSG),PARTNERSHIP FOR T-CELL BIOLOGY (TCELL) REVDAT 2 01-MAY-24 2NBB 1 REMARK SEQADV REVDAT 1 01-JUN-16 2NBB 0 JRNL AUTH P.SERRANO,C.BEUCK,K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE ACIDIC DOMAIN OF SYNCRIP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA, OPALP REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000104653. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.0798 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-98% 15N] REMARK 210 PROTEIN, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 5 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : APSY 4D-HACANH; APSY 5D REMARK 210 -HACACONH; APSY 5D-CBCACONH; 2D REMARK 210 1H-15N HSQC; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 32 -41.92 69.12 REMARK 500 1 HIS A 65 41.66 -141.40 REMARK 500 1 ASN A 68 83.28 -150.89 REMARK 500 1 THR A 79 -51.04 -128.56 REMARK 500 1 PRO A 97 -167.30 -62.80 REMARK 500 1 ASP A 98 -154.57 -58.69 REMARK 500 1 GLU A 99 137.28 67.89 REMARK 500 1 ALA A 100 116.08 -160.59 REMARK 500 1 ILE A 102 -72.55 -60.71 REMARK 500 1 LYS A 103 -2.53 53.28 REMARK 500 1 TYR A 111 109.57 -58.76 REMARK 500 2 GLU A 3 -46.40 -144.04 REMARK 500 2 VAL A 30 -167.30 -127.06 REMARK 500 2 ALA A 31 33.03 -140.12 REMARK 500 2 HIS A 32 -45.15 71.94 REMARK 500 2 LEU A 43 32.38 -99.79 REMARK 500 2 ASP A 62 44.15 -78.42 REMARK 500 2 LYS A 85 -61.53 70.09 REMARK 500 2 VAL A 90 55.72 -111.03 REMARK 500 2 ALA A 91 -3.12 -146.00 REMARK 500 2 SER A 94 119.58 -165.58 REMARK 500 2 ALA A 100 -30.12 -148.43 REMARK 500 2 ASP A 114 115.82 -169.52 REMARK 500 3 HIS A 32 -80.38 67.05 REMARK 500 3 SER A 33 34.83 -82.57 REMARK 500 3 LEU A 43 22.61 -73.35 REMARK 500 3 GLU A 45 77.15 -118.15 REMARK 500 3 ASP A 60 59.49 -90.39 REMARK 500 3 LEU A 63 33.05 -77.51 REMARK 500 3 SER A 94 117.94 -164.78 REMARK 500 3 ILE A 102 -41.40 -137.91 REMARK 500 3 LEU A 113 24.32 -65.05 REMARK 500 4 HIS A 32 -85.64 60.93 REMARK 500 4 LEU A 43 36.09 -78.46 REMARK 500 4 LYS A 44 -65.64 -125.87 REMARK 500 4 ASP A 60 43.65 -144.60 REMARK 500 4 HIS A 65 55.99 -152.91 REMARK 500 4 THR A 88 -174.38 -62.53 REMARK 500 4 VAL A 90 114.71 -161.63 REMARK 500 4 SER A 93 39.57 -80.44 REMARK 500 4 ASP A 98 76.71 -164.81 REMARK 500 4 ALA A 100 -60.24 -160.43 REMARK 500 4 ALA A 104 -154.57 -74.21 REMARK 500 4 ARG A 108 -7.19 -152.92 REMARK 500 4 THR A 112 -164.95 -118.88 REMARK 500 4 LEU A 113 -165.35 -71.36 REMARK 500 4 THR A 116 42.00 -66.39 REMARK 500 5 LEU A 43 38.48 -70.87 REMARK 500 5 GLU A 45 61.43 -110.64 REMARK 500 5 ASP A 60 41.39 -107.56 REMARK 500 REMARK 500 THIS ENTRY HAS 229 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 117 GLY A 118 1 137.00 REMARK 500 GLY A 12 LEU A 13 2 -149.14 REMARK 500 GLY A 12 LEU A 13 4 -143.19 REMARK 500 VAL A 30 ALA A 31 6 149.72 REMARK 500 GLY A 1 SER A 2 9 -146.56 REMARK 500 PRO A 97 ASP A 98 9 137.05 REMARK 500 LEU A 113 ASP A 114 9 -149.94 REMARK 500 THR A 117 GLY A 118 9 147.65 REMARK 500 THR A 117 GLY A 118 10 143.34 REMARK 500 THR A 112 LEU A 113 11 149.10 REMARK 500 SER A 93 SER A 94 12 141.83 REMARK 500 THR A 117 GLY A 118 13 143.60 REMARK 500 PRO A 97 ASP A 98 14 137.23 REMARK 500 PRO A 97 ASP A 98 17 149.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 83 0.09 SIDE CHAIN REMARK 500 6 ARG A 81 0.11 SIDE CHAIN REMARK 500 7 TYR A 80 0.08 SIDE CHAIN REMARK 500 7 ARG A 81 0.10 SIDE CHAIN REMARK 500 8 ARG A 38 0.09 SIDE CHAIN REMARK 500 8 ARG A 81 0.09 SIDE CHAIN REMARK 500 9 ARG A 81 0.09 SIDE CHAIN REMARK 500 10 TYR A 25 0.08 SIDE CHAIN REMARK 500 10 TYR A 80 0.08 SIDE CHAIN REMARK 500 12 TYR A 25 0.09 SIDE CHAIN REMARK 500 15 ARG A 38 0.08 SIDE CHAIN REMARK 500 15 ARG A 83 0.11 SIDE CHAIN REMARK 500 17 ARG A 38 0.15 SIDE CHAIN REMARK 500 18 TYR A 80 0.10 SIDE CHAIN REMARK 500 19 ARG A 81 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25970 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-430615 RELATED DB: TARGETTRACK DBREF 2NBB A 2 118 UNP O60506 HNRPQ_HUMAN 24 140 SEQADV 2NBB GLY A 1 UNP O60506 EXPRESSION TAG SEQRES 1 A 118 GLY SER GLU ASN PHE GLN THR LEU LEU ASP ALA GLY LEU SEQRES 2 A 118 PRO GLN LYS VAL ALA GLU LYS LEU ASP GLU ILE TYR VAL SEQRES 3 A 118 ALA GLY LEU VAL ALA HIS SER ASP LEU ASP GLU ARG ALA SEQRES 4 A 118 ILE GLU ALA LEU LYS GLU PHE ASN GLU ASP GLY ALA LEU SEQRES 5 A 118 ALA VAL LEU GLN GLN PHE LYS ASP SER ASP LEU SER HIS SEQRES 6 A 118 VAL GLN ASN LYS SER ALA PHE LEU CYS GLY VAL MET LYS SEQRES 7 A 118 THR TYR ARG GLN ARG GLU LYS GLN GLY THR LYS VAL ALA SEQRES 8 A 118 ASP SER SER LYS GLY PRO ASP GLU ALA LYS ILE LYS ALA SEQRES 9 A 118 LEU LEU GLU ARG THR GLY TYR THR LEU ASP VAL THR THR SEQRES 10 A 118 GLY HELIX 1 1 ASN A 4 GLY A 12 1 9 HELIX 2 2 PRO A 14 GLU A 19 1 6 HELIX 3 3 GLU A 23 GLY A 28 1 6 HELIX 4 4 ASP A 36 ALA A 42 1 7 HELIX 5 5 ASN A 47 LYS A 59 1 13 HELIX 6 6 ASN A 68 MET A 77 1 10 HELIX 7 7 LYS A 78 GLU A 84 5 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1