HEADER TRANSLATION 11-FEB-16 2NBG TITLE STRUCTURE OF THE GEOBACILLUS STEAROTHERMOPHILUS IF2 G3-SUBDOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR IF-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 394-514; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: INFB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PEV KEYWDS RIBOSOME, TRANSLATION INITIATION, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.DONGRE,G.E.FOLKERS,C.O.GUALERZI,R.BOELENS,H.WIENK REVDAT 4 15-MAY-24 2NBG 1 REMARK REVDAT 3 14-JUN-23 2NBG 1 REMARK SEQADV REVDAT 2 07-SEP-16 2NBG 1 JRNL REVDAT 1 20-JUL-16 2NBG 0 JRNL AUTH R.DONGRE,G.E.FOLKERS,C.O.GUALERZI,R.BOELENS,H.WIENK JRNL TITL A MODEL FOR THE INTERACTION OF THE G3-SUBDOMAIN OF JRNL TITL 2 GEOBACILLUS STEAROTHERMOPHILUS IF2 WITH THE 30S RIBOSOMAL JRNL TITL 3 SUBUNIT. JRNL REF PROTEIN SCI. V. 25 1722 2016 JRNL REFN ISSN 0961-8368 JRNL PMID 27364543 JRNL DOI 10.1002/PRO.2977 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000104658. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.15 MM [U-100% 13C; U-100% 15N] REMARK 210 IF2-G3, 50 MM SODIUM PHOSPHATE, REMARK 210 100 MM POTASSIUM CHLORIDE, 2 % REMARK 210 GLYCEROL, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HNCACO; 3D 1H-15N TOCSY; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; REMARK 210 2D 1H-1H NOESY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA, TALOS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 392 -63.39 69.64 REMARK 500 1 MET A 393 100.32 73.51 REMARK 500 1 HIS A 396 -71.18 -148.37 REMARK 500 1 LEU A 397 100.03 -176.48 REMARK 500 1 ILE A 401 -66.14 -143.14 REMARK 500 1 VAL A 404 -75.28 -119.82 REMARK 500 1 MET A 407 22.23 -142.00 REMARK 500 1 LYS A 411 95.59 68.42 REMARK 500 1 ALA A 412 -44.21 -146.59 REMARK 500 1 ALA A 418 82.54 -169.43 REMARK 500 1 GLU A 498 -57.02 -138.04 REMARK 500 1 ASP A 499 -92.94 47.94 REMARK 500 1 ALA A 511 -77.64 -146.98 REMARK 500 1 GLN A 512 93.85 170.34 REMARK 500 2 SER A 391 -176.44 68.48 REMARK 500 2 HIS A 392 -57.35 73.25 REMARK 500 2 MET A 393 -26.69 64.80 REMARK 500 2 LEU A 398 98.35 71.68 REMARK 500 2 VAL A 404 -69.42 -123.08 REMARK 500 2 SER A 405 99.99 -178.63 REMARK 500 2 MET A 407 106.01 -166.11 REMARK 500 2 LYS A 411 75.09 62.98 REMARK 500 2 ARG A 417 -86.32 -133.72 REMARK 500 2 ALA A 418 79.31 -155.14 REMARK 500 2 GLU A 498 -83.47 -91.51 REMARK 500 2 ASP A 499 -55.61 67.45 REMARK 500 2 ALA A 511 116.98 72.02 REMARK 500 2 GLN A 512 168.06 68.64 REMARK 500 3 ASP A 395 -164.13 60.27 REMARK 500 3 LEU A 397 109.78 68.52 REMARK 500 3 MET A 400 82.21 64.98 REMARK 500 3 LEU A 402 -93.31 61.55 REMARK 500 3 LEU A 403 -57.45 -151.07 REMARK 500 3 VAL A 404 -63.04 71.80 REMARK 500 3 GLU A 409 85.32 -157.72 REMARK 500 3 LYS A 411 -67.82 69.50 REMARK 500 3 ALA A 412 93.51 -176.18 REMARK 500 3 ARG A 416 -64.10 72.51 REMARK 500 3 ARG A 417 -39.10 -168.34 REMARK 500 3 ALA A 509 -163.17 59.68 REMARK 500 3 ALA A 511 74.55 65.22 REMARK 500 3 ARG A 513 105.80 -169.83 REMARK 500 4 LEU A 398 -76.78 72.71 REMARK 500 4 GLU A 399 70.52 52.24 REMARK 500 4 ILE A 401 -65.47 -95.69 REMARK 500 4 LEU A 402 177.57 61.97 REMARK 500 4 LEU A 403 89.06 63.97 REMARK 500 4 ARG A 416 176.58 67.91 REMARK 500 4 ARG A 417 -112.91 52.42 REMARK 500 4 ASP A 499 -52.43 -158.75 REMARK 500 REMARK 500 THIS ENTRY HAS 198 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 15 ARG A 510 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25975 RELATED DB: BMRB DBREF 2NBG A 394 514 UNP P04766 IF2_GEOSE 394 514 SEQADV 2NBG GLY A 390 UNP P04766 EXPRESSION TAG SEQADV 2NBG SER A 391 UNP P04766 EXPRESSION TAG SEQADV 2NBG HIS A 392 UNP P04766 EXPRESSION TAG SEQADV 2NBG MET A 393 UNP P04766 EXPRESSION TAG SEQRES 1 A 125 GLY SER HIS MET LEU ASP HIS LEU LEU GLU MET ILE LEU SEQRES 2 A 125 LEU VAL SER GLU MET GLU GLU LEU LYS ALA ASN PRO ASN SEQRES 3 A 125 ARG ARG ALA VAL GLY THR VAL ILE GLU ALA LYS LEU ASP SEQRES 4 A 125 LYS GLY ARG GLY PRO VAL ALA THR LEU LEU VAL GLN ALA SEQRES 5 A 125 GLY THR LEU LYS VAL GLY ASP PRO ILE VAL VAL GLY THR SEQRES 6 A 125 THR TYR GLY ARG VAL ARG ALA MET VAL ASN ASP SER GLY SEQRES 7 A 125 ARG ARG VAL LYS GLU ALA GLY PRO SER MET PRO VAL GLU SEQRES 8 A 125 ILE THR GLY LEU HIS ASP VAL PRO GLN ALA GLY ASP ARG SEQRES 9 A 125 PHE MET VAL PHE GLU ASP GLU LYS LYS ALA ARG GLN ILE SEQRES 10 A 125 GLY GLU ALA ARG ALA GLN ARG GLN HELIX 1 1 ASP A 499 GLY A 507 1 9 SHEET 1 A 8 THR A 455 ARG A 458 0 SHEET 2 A 8 PRO A 449 VAL A 452 -1 N VAL A 452 O THR A 455 SHEET 3 A 8 ARG A 493 MET A 495 -1 O MET A 495 N VAL A 451 SHEET 4 A 8 GLY A 420 ASP A 428 -1 N GLY A 420 O PHE A 494 SHEET 5 A 8 GLY A 432 LEU A 438 -1 O VAL A 434 N LYS A 426 SHEET 6 A 8 PRO A 478 THR A 482 -1 O VAL A 479 N LEU A 437 SHEET 7 A 8 MET A 462 ASN A 464 -1 N VAL A 463 O GLU A 480 SHEET 8 A 8 ARG A 469 VAL A 470 -1 O VAL A 470 N MET A 462 SHEET 1 B 2 LEU A 444 LYS A 445 0 SHEET 2 B 2 GLU A 472 ALA A 473 -1 O ALA A 473 N LEU A 444 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1