data_2NBZ # _entry.id 2NBZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104676 RCSB ? ? 2NBZ PDB pdb_00002nbz 10.2210/pdb2nbz/pdb 25998 BMRB ? 10.13018/BMR25998 D_1000104676 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-10 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_related 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' pdbx_nmr_spectrometer 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_related.db_id' 2 2 'Structure model' '_pdbx_database_related.db_name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 6 3 'Structure model' '_pdbx_nmr_software.name' 7 3 'Structure model' '_pdbx_nmr_spectrometer.model' 8 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2NBZ _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2016-03-16 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 25998 BMRB unspecified . 2NBX PDB unspecified . 2NBY PDB unspecified . 2NC0 PDB unspecified . 2NC1 PDB unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Imai, S.' 1 ;D'Souza, V. ; 2 'Wagner, G.' 3 # _citation.id primary _citation.title 'An accurately preorganized IRES RNA structure enables eIF4G capture for initiation of viral translation.' _citation.journal_abbrev 'Nat. Struct. Mol. Biol.' _citation.journal_volume 23 _citation.page_first 859 _citation.page_last 864 _citation.year 2016 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9985 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27525590 _citation.pdbx_database_id_DOI 10.1038/nsmb.3280 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Imai, S.' 1 ? primary 'Kumar, P.' 2 ? primary 'Hellen, C.U.' 3 ? primary ;D'Souza, V.M. ; 4 ? primary 'Wagner, G.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'IRES RNA 40-MER' _entity.formula_weight 12798.553 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGCUCGGUGCACAUGCUUUACAUGUGUUUAGUCGAGCCC _entity_poly.pdbx_seq_one_letter_code_can GGGCUCGGUGCACAUGCUUUACAUGUGUUUAGUCGAGCCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 C n 1 5 U n 1 6 C n 1 7 G n 1 8 G n 1 9 U n 1 10 G n 1 11 C n 1 12 A n 1 13 C n 1 14 A n 1 15 U n 1 16 G n 1 17 C n 1 18 U n 1 19 U n 1 20 U n 1 21 A n 1 22 C n 1 23 A n 1 24 U n 1 25 G n 1 26 U n 1 27 G n 1 28 U n 1 29 U n 1 30 U n 1 31 A n 1 32 G n 1 33 U n 1 34 C n 1 35 G n 1 36 A n 1 37 G n 1 38 C n 1 39 C n 1 40 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 730 730 G G A . n A 1 2 G 2 731 731 G G A . n A 1 3 G 3 732 732 G G A . n A 1 4 C 4 733 733 C C A . n A 1 5 U 5 734 734 U U A . n A 1 6 C 6 735 735 C C A . n A 1 7 G 7 736 736 G G A . n A 1 8 G 8 737 737 G G A . n A 1 9 U 9 738 738 U U A . n A 1 10 G 10 739 739 G G A . n A 1 11 C 11 740 740 C C A . n A 1 12 A 12 741 741 A A A . n A 1 13 C 13 742 742 C C A . n A 1 14 A 14 743 743 A A A . n A 1 15 U 15 744 744 U U A . n A 1 16 G 16 745 745 G G A . n A 1 17 C 17 746 746 C C A . n A 1 18 U 18 747 747 U U A . n A 1 19 U 19 748 748 U U A . n A 1 20 U 20 749 749 U U A . n A 1 21 A 21 750 750 A A A . n A 1 22 C 22 751 751 C C A . n A 1 23 A 23 752 752 A A A . n A 1 24 U 24 753 753 U U A . n A 1 25 G 25 754 754 G G A . n A 1 26 U 26 755 755 U U A . n A 1 27 G 27 756 756 G G A . n A 1 28 U 28 757 757 U U A . n A 1 29 U 29 758 758 U U A . n A 1 30 U 30 759 759 U U A . n A 1 31 A 31 760 760 A A A . n A 1 32 G 32 761 761 G G A . n A 1 33 U 33 762 762 U U A . n A 1 34 C 34 763 763 C C A . n A 1 35 G 35 764 764 G G A . n A 1 36 A 36 765 765 A A A . n A 1 37 G 37 766 766 G G A . n A 1 38 C 38 767 767 C C A . n A 1 39 C 39 768 768 C C A . n A 1 40 C 40 769 769 C C A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2NBZ _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2NBZ _struct.title 'Solution structure of the K domain of EMCV IRES' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NBZ _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'IRES, translation initiation, Viral RNA, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2NBZ _struct_ref.pdbx_db_accession 2NBZ _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2NBZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 40 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2NBZ _struct_ref_seq.db_align_beg 730 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 769 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 730 _struct_ref_seq.pdbx_auth_seq_align_end 769 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 730 A C 769 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 730 A C 769 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 730 A C 769 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 731 A C 768 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 731 A C 768 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 731 A C 768 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 732 A C 767 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 732 A C 767 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 732 A C 767 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 733 A G 766 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 733 A G 766 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 733 A G 766 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 36 N1 ? ? A U 734 A A 765 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 36 N6 ? ? A U 734 A A 765 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 735 A G 764 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 735 A G 764 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 735 A G 764 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 736 A C 763 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 736 A C 763 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 736 A C 763 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N1 ? ? ? 1_555 A U 33 O2 ? ? A G 737 A U 762 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 A U 33 N3 ? ? A G 737 A U 762 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A U 9 N3 ? ? ? 1_555 A U 30 O2 ? ? A U 738 A U 759 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog24 hydrog ? ? A U 9 O4 ? ? ? 1_555 A U 30 N3 ? ? A U 738 A U 759 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog25 hydrog ? ? A U 9 O2 ? ? ? 1_555 A A 31 N6 ? ? A U 738 A A 760 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog26 hydrog ? ? A G 10 N1 ? ? ? 1_555 A U 28 O2 ? ? A G 739 A U 757 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A G 10 O6 ? ? ? 1_555 A U 28 N3 ? ? A G 739 A U 757 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 740 A G 756 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 740 A G 756 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 740 A G 756 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 12 N1 ? ? ? 1_555 A U 26 N3 ? ? A A 741 A U 755 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 12 N6 ? ? ? 1_555 A U 26 O4 ? ? A A 741 A U 755 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 742 A G 754 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 742 A G 754 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 742 A G 754 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 24 N3 ? ? A A 743 A U 753 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 24 O4 ? ? A A 743 A U 753 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 744 A A 752 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 744 A A 752 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 745 A C 751 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 745 A C 751 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 745 A C 751 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 17 N3 ? ? ? 1_555 A A 21 N6 ? ? A C 746 A A 750 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O2 A C 746 ? ? H1 A A 750 ? ? 1.51 2 1 O2 A U 747 ? ? OP2 A U 749 ? ? 2.14 3 2 O2 A C 746 ? ? H1 A A 750 ? ? 1.50 4 2 O2 A U 747 ? ? OP2 A U 749 ? ? 2.11 5 3 O2 A C 746 ? ? H1 A A 750 ? ? 1.52 6 3 O2 A U 747 ? ? OP2 A U 749 ? ? 2.11 7 4 O2 A C 746 ? ? H1 A A 750 ? ? 1.52 8 4 O2 A U 747 ? ? OP2 A U 749 ? ? 2.12 9 5 O2 A C 746 ? ? H1 A A 750 ? ? 1.53 10 5 O2 A U 747 ? ? OP2 A U 749 ? ? 2.14 11 6 O2 A C 746 ? ? H1 A A 750 ? ? 1.52 12 6 O2 A U 747 ? ? OP2 A U 749 ? ? 2.11 13 7 O2 A C 746 ? ? H1 A A 750 ? ? 1.51 14 7 O2 A U 747 ? ? OP2 A U 749 ? ? 2.11 15 8 O2 A C 746 ? ? H1 A A 750 ? ? 1.52 16 8 O2 A U 747 ? ? OP2 A U 749 ? ? 2.01 17 9 O2 A C 746 ? ? H1 A A 750 ? ? 1.50 18 9 O2 A U 747 ? ? OP2 A U 749 ? ? 2.16 19 10 O2 A C 746 ? ? H1 A A 750 ? ? 1.51 20 10 O2 A U 747 ? ? OP2 A U 749 ? ? 1.98 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 2 N9 A A 750 ? ? C4 A A 750 ? ? C5 A A 750 ? ? 103.27 105.80 -2.53 0.40 N 2 4 "O4'" A A 750 ? ? "C1'" A A 750 ? ? N9 A A 750 ? ? 112.90 108.50 4.40 0.70 N 3 7 N9 A A 750 ? ? C4 A A 750 ? ? C5 A A 750 ? ? 102.92 105.80 -2.88 0.40 N 4 8 "O4'" A A 750 ? ? "C1'" A A 750 ? ? N9 A A 750 ? ? 113.23 108.50 4.73 0.70 N 5 10 N9 A A 750 ? ? C4 A A 750 ? ? C5 A A 750 ? ? 103.00 105.80 -2.80 0.40 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A A 750 ? ? 0.103 'SIDE CHAIN' 2 2 A A 750 ? ? 0.101 'SIDE CHAIN' 3 3 A A 750 ? ? 0.103 'SIDE CHAIN' 4 4 A A 750 ? ? 0.102 'SIDE CHAIN' 5 5 A A 750 ? ? 0.100 'SIDE CHAIN' 6 6 A A 750 ? ? 0.102 'SIDE CHAIN' 7 7 A A 750 ? ? 0.104 'SIDE CHAIN' 8 8 A A 750 ? ? 0.108 'SIDE CHAIN' 9 9 A A 750 ? ? 0.103 'SIDE CHAIN' 10 10 A A 750 ? ? 0.106 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2NBZ _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2NBZ _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.5 mM RNA (40-MER), 10 mM potassium phosphate, 10 mM sodium chloride, 100% D2O' 1 '100% D2O' '0.5 mM RNA (40-MER), 10 mM potassium phosphate, 10 mM sodium chloride, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' '0.5 mM [U-13C; U-15N]-Ade, [U-13C; U-15N]-Cyt RNA (40-MER), 10 mM potassium phosphate, 10 mM sodium chloride-9, 100% D2O' 3 '100% D2O' '0.5 mM [U-13C; U-15N]-Gua, [U-13C; U-15N]-Ura RNA (40-MER), 10 mM potassium phosphate, 10 mM sodium chloride-12, 100% D2O' 4 '100% D2O' '0.5 mM [U-13C; U-15N]-Ade, [U-13C; U-15N]-Cyt RNA (40-MER), 10 mM potassium phosphate, 10 mM sodium chloride-15, 90% H2O/10% D2O' 5 '90% H2O/10% D2O' '0.5 mM [U-13C; U-15N]-Gua, [U-13C; U-15N]-Ura RNA (40-MER), 10 mM potassium phosphate, 10 mM sodium chloride-18, 90% H2O/10% D2O' 6 '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'RNA (40-MER)-1' 0.5 ? mM ? 1 'potassium phosphate-2' 10 ? mM ? 1 'sodium chloride-3' 10 ? mM ? 1 'RNA (40-MER)-4' 0.5 ? mM ? 2 'potassium phosphate-5' 10 ? mM ? 2 'sodium chloride-6' 10 ? mM ? 2 'RNA (40-MER)-7' 0.5 ? mM '[U-13C; U-15N]-Ade, [U-13C; U-15N]-Cyt' 3 'potassium phosphate-8' 10 ? mM ? 3 'sodium chloride-9' 10 ? mM ? 3 'RNA (40-MER)-10' 0.5 ? mM '[U-13C; U-15N]-Gua, [U-13C; U-15N]-Ura' 4 'potassium phosphate-11' 10 ? mM ? 4 'sodium chloride-12' 10 ? mM ? 4 'RNA (40-MER)-13' 0.5 ? mM '[U-13C; U-15N]-Ade, [U-13C; U-15N]-Cyt' 5 'potassium phosphate-14' 10 ? mM ? 5 'sodium chloride-15' 10 ? mM ? 5 'RNA (40-MER)-16' 0.5 ? mM '[U-13C; U-15N]-Gua, [U-13C; U-15N]-Ura' 6 'potassium phosphate-17' 10 ? mM ? 6 'sodium chloride-18' 10 ? mM ? 6 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 20 6.5 ambient ? 308 K 2 20 6.5 ambient ? 283 K 3 20 5.5 ambient ? 283 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 2 2 2 '2D 1H-1H NOESY' 3 3 2 '2D 1H-1H NOESY' 1 4 3 '2D 1H-13C HSQC' 1 5 3 '3D 1H-13C NOESY' 1 6 4 '2D 1H-13C HSQC' 1 7 4 '3D 1H-13C NOESY' 2 8 5 '2D 1H-15N HSQC' 3 9 5 '2D 1H-15N HSQC' 2 10 6 '2D 1H-15N HSQC' 3 11 6 '2D 1H-15N HSQC' # _pdbx_nmr_refine.entry_id 2NBZ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Keller and Wuthrich' 'chemical shift assignment' CARA ? 1 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA ? 2 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2NBZ 'double helix' 2NBZ 'a-form double helix' 2NBZ 'hairpin loop' 2NBZ 'mismatched base pair' 2NBZ 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 40 1_555 -0.217 -0.029 -0.075 1.052 -1.498 -2.144 1 A_G730:C769_A A 730 ? A 769 ? 19 1 1 A G 2 1_555 A C 39 1_555 -0.220 -0.142 -0.192 -0.289 -7.938 -0.816 2 A_G731:C768_A A 731 ? A 768 ? 19 1 1 A G 3 1_555 A C 38 1_555 -0.200 -0.240 -0.200 -2.161 -7.749 2.079 3 A_G732:C767_A A 732 ? A 767 ? 19 1 1 A C 4 1_555 A G 37 1_555 0.145 -0.234 -0.181 2.072 -7.064 1.763 4 A_C733:G766_A A 733 ? A 766 ? 19 1 1 A U 5 1_555 A A 36 1_555 0.014 -0.263 -0.165 1.286 -3.606 -0.523 5 A_U734:A765_A A 734 ? A 765 ? 20 1 1 A C 6 1_555 A G 35 1_555 0.132 -0.178 -0.189 2.716 -0.531 1.660 6 A_C735:G764_A A 735 ? A 764 ? 19 1 1 A G 7 1_555 A C 34 1_555 -0.175 -0.133 -0.309 -0.429 -2.057 3.318 7 A_G736:C763_A A 736 ? A 763 ? 19 1 1 A G 8 1_555 A U 33 1_555 -2.112 -0.409 -0.441 7.861 -5.717 6.053 8 A_G737:U762_A A 737 ? A 762 ? 28 1 1 A U 9 1_555 A U 30 1_555 -2.761 -1.889 0.497 -1.120 -21.997 7.312 9 A_U738:U759_A A 738 ? A 759 ? 16 1 1 A G 10 1_555 A U 28 1_555 -2.020 -0.262 0.120 3.539 -1.238 -3.816 10 A_G739:U757_A A 739 ? A 757 ? 28 1 1 A C 11 1_555 A G 27 1_555 -0.145 -0.072 -0.066 6.479 -10.971 -3.781 11 A_C740:G756_A A 740 ? A 756 ? 19 1 1 A A 12 1_555 A U 26 1_555 -0.116 -0.222 0.012 1.434 -11.422 -1.322 12 A_A741:U755_A A 741 ? A 755 ? 20 1 1 A C 13 1_555 A G 25 1_555 0.091 -0.198 -0.050 2.306 -10.586 1.287 13 A_C742:G754_A A 742 ? A 754 ? 19 1 1 A A 14 1_555 A U 24 1_555 -0.127 -0.136 0.014 -1.348 -7.396 -1.845 14 A_A743:U753_A A 743 ? A 753 ? 20 1 1 A U 15 1_555 A A 23 1_555 0.137 0.050 0.214 1.248 8.495 -1.154 15 A_U744:A752_A A 744 ? A 752 ? 20 1 1 A G 16 1_555 A C 22 1_555 0.096 -0.041 -0.137 4.824 6.737 -2.449 16 A_G745:C751_A A 745 ? A 751 ? 19 1 1 A C 17 1_555 A A 21 1_555 2.350 -0.539 -0.164 -3.655 -10.246 12.307 17 A_C746:A750_A A 746 ? A 750 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 40 1_555 A G 2 1_555 A C 39 1_555 0.060 -1.756 3.271 -0.309 8.127 30.525 -4.636 -0.164 2.724 15.103 0.575 31.565 1 AA_G730G731:C768C769_AA A 730 ? A 769 ? A 731 ? A 768 ? 1 A G 2 1_555 A C 39 1_555 A G 3 1_555 A C 38 1_555 0.147 -1.680 3.308 -1.021 4.810 30.903 -4.000 -0.461 3.012 8.955 1.901 31.283 2 AA_G731G732:C767C768_AA A 731 ? A 768 ? A 732 ? A 767 ? 1 A G 3 1_555 A C 38 1_555 A C 4 1_555 A G 37 1_555 -0.045 -1.446 3.200 -0.184 3.168 32.710 -3.075 0.050 3.051 5.609 0.326 32.859 3 AA_G732C733:G766C767_AA A 732 ? A 767 ? A 733 ? A 766 ? 1 A C 4 1_555 A G 37 1_555 A U 5 1_555 A A 36 1_555 -0.171 -1.558 3.261 -0.144 8.507 30.105 -4.397 0.292 2.730 15.980 0.271 31.258 4 AA_C733U734:A765G766_AA A 733 ? A 766 ? A 734 ? A 765 ? 1 A U 5 1_555 A A 36 1_555 A C 6 1_555 A G 35 1_555 -0.073 -1.571 3.274 -1.116 7.881 31.120 -4.176 -0.056 2.803 14.395 2.039 32.097 5 AA_U734C735:G764A765_AA A 734 ? A 765 ? A 735 ? A 764 ? 1 A C 6 1_555 A G 35 1_555 A G 7 1_555 A C 34 1_555 0.015 -1.692 3.338 0.151 10.657 29.305 -5.051 -0.001 2.579 20.240 -0.286 31.143 6 AA_C735G736:C763G764_AA A 735 ? A 764 ? A 736 ? A 763 ? 1 A G 7 1_555 A C 34 1_555 A G 8 1_555 A U 33 1_555 0.129 -1.549 3.035 -1.846 4.001 22.057 -5.275 -0.932 2.695 10.326 4.764 22.488 7 AA_G736G737:U762C763_AA A 736 ? A 763 ? A 737 ? A 762 ? 1 A G 8 1_555 A U 33 1_555 A U 9 1_555 A U 30 1_555 3.737 0.568 5.315 -24.575 3.757 65.884 0.299 -4.547 3.906 3.335 21.811 69.921 8 AA_G737U738:U759U762_AA A 737 ? A 762 ? A 738 ? A 759 ? 1 A U 9 1_555 A U 30 1_555 A G 10 1_555 A U 28 1_555 0.410 -1.657 5.366 -18.113 -17.747 47.491 0.092 -2.429 5.188 -20.430 20.852 53.489 9 AA_U738G739:U757U759_AA A 738 ? A 759 ? A 739 ? A 757 ? 1 A G 10 1_555 A U 28 1_555 A C 11 1_555 A G 27 1_555 -0.156 -1.426 3.264 -1.011 3.237 38.828 -2.521 0.114 3.143 4.858 1.517 38.970 10 AA_G739C740:G756U757_AA A 739 ? A 757 ? A 740 ? A 756 ? 1 A C 11 1_555 A G 27 1_555 A A 12 1_555 A U 26 1_555 0.114 -1.709 3.314 -0.363 6.303 32.818 -3.981 -0.257 2.943 11.029 0.635 33.404 11 AA_C740A741:U755G756_AA A 740 ? A 756 ? A 741 ? A 755 ? 1 A A 12 1_555 A U 26 1_555 A C 13 1_555 A G 25 1_555 0.118 -1.458 3.220 0.624 5.082 33.049 -3.334 -0.106 2.971 8.867 -1.089 33.432 12 AA_A741C742:G754U755_AA A 741 ? A 755 ? A 742 ? A 754 ? 1 A C 13 1_555 A G 25 1_555 A A 14 1_555 A U 24 1_555 -0.056 -1.589 3.214 0.491 10.377 31.562 -4.365 0.174 2.576 18.462 -0.874 33.186 13 AA_C742A743:U753G754_AA A 742 ? A 754 ? A 743 ? A 753 ? 1 A A 14 1_555 A U 24 1_555 A U 15 1_555 A A 23 1_555 0.032 -1.635 3.106 -1.436 12.103 31.424 -4.526 -0.257 2.331 21.366 2.535 33.649 14 AA_A743U744:A752U753_AA A 743 ? A 753 ? A 744 ? A 752 ? 1 A U 15 1_555 A A 23 1_555 A G 16 1_555 A C 22 1_555 0.024 -1.478 3.352 3.825 10.837 27.776 -4.960 0.697 2.587 21.448 -7.570 30.016 15 AA_U744G745:C751A752_AA A 744 ? A 752 ? A 745 ? A 751 ? 1 A G 16 1_555 A C 22 1_555 A C 17 1_555 A A 21 1_555 -0.165 -0.965 3.451 6.439 12.359 29.065 -3.942 1.445 2.730 23.030 -11.999 32.168 16 AA_G745C746:A750C751_AA A 745 ? A 751 ? A 746 ? A 750 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 700 Bruker AVANCE 2 'Bruker Avance' # _atom_sites.entry_id 2NBZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_