HEADER DNA BINDING PROTEIN 07-APR-16 2NCJ TITLE SOLUTION STRUCTURE OF THE PRIC DNA REPLICATION RESTART PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRONOBACTER SAKAZAKII ATCC BAA-894; SOURCE 3 ORGANISM_TAXID: 290339; SOURCE 4 STRAIN: ATCC BAA-894; SOURCE 5 GENE: ESA_02803; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: T7-INDUCIBLE OVEREXPRESSION KEYWDS DNA REPLICATION RESTART, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.C.CORNILESCU,G.CORNILESCU,S.R.WESSEL,J.L.KECK,J.L.MARKLEY REVDAT 5 15-MAY-24 2NCJ 1 REMARK REVDAT 4 14-JUN-23 2NCJ 1 REMARK REVDAT 3 14-SEP-16 2NCJ 1 JRNL REVDAT 2 20-JUL-16 2NCJ 1 JRNL REVDAT 1 06-JUL-16 2NCJ 0 JRNL AUTH S.R.WESSEL,C.C.CORNILESCU,G.CORNILESCU,A.METZ,M.LEROUX,K.HU, JRNL AUTH 2 S.J.SANDLER,J.L.MARKLEY,J.L.KECK JRNL TITL STRUCTURE AND FUNCTION OF THE PRIC DNA REPLICATION RESTART JRNL TITL 2 PROTEIN. JRNL REF J.BIOL.CHEM. V. 291 18384 2016 JRNL REFN ISSN 0021-9258 JRNL PMID 27382050 JRNL DOI 10.1074/JBC.M116.738781 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000104695. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4-0.6 MM [U-13C; U-15N] PRIC, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D C(CO) REMARK 210 NH; 3D H(CCO)NH; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; (HB)CB(CGCD) REMARK 210 HD; (HB)CB(CGCDCE)HE; 2D 1H-13C REMARK 210 HSQC ALIPHATIC; 2D ARTSY; 3D REMARK 210 HCA(CO)N REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ; 750 REMARK 210 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP, TALOS, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H HIS A 98 H GLU A 99 1.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 4 THR A 3 C PRO A 4 N 0.117 REMARK 500 8 THR A 3 C PRO A 4 N 0.116 REMARK 500 9 LEU A 103 C PRO A 104 N 0.118 REMARK 500 13 THR A 3 C PRO A 4 N 0.114 REMARK 500 13 LEU A 103 C PRO A 104 N 0.117 REMARK 500 14 LEU A 103 C PRO A 104 N 0.121 REMARK 500 17 LEU A 103 C PRO A 104 N 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 41 175.65 166.56 REMARK 500 1 ALA A 44 17.84 -145.35 REMARK 500 1 GLU A 99 -89.54 -94.52 REMARK 500 2 HIS A 29 -92.84 60.36 REMARK 500 2 CYS A 41 173.85 178.60 REMARK 500 2 GLU A 99 -89.65 -93.79 REMARK 500 3 GLN A 27 -103.91 -103.82 REMARK 500 3 ARG A 28 -41.26 -134.31 REMARK 500 3 ALA A 44 -75.42 -126.55 REMARK 500 3 GLU A 99 -98.47 -88.48 REMARK 500 4 THR A 3 -52.48 -121.26 REMARK 500 4 HIS A 29 -121.02 -119.42 REMARK 500 4 ARG A 42 48.50 -106.55 REMARK 500 4 ALA A 44 63.91 -175.21 REMARK 500 4 LEU A 95 -0.76 -58.57 REMARK 500 4 ARG A 96 27.06 -67.76 REMARK 500 4 HIS A 98 -74.35 -84.14 REMARK 500 4 GLU A 99 -99.55 -141.30 REMARK 500 5 ALA A 44 59.76 27.59 REMARK 500 5 GLU A 99 -94.00 -90.66 REMARK 500 6 ARG A 2 74.22 58.24 REMARK 500 6 ARG A 28 76.07 61.40 REMARK 500 6 HIS A 29 -124.84 -110.15 REMARK 500 6 CYS A 41 176.38 173.13 REMARK 500 6 GLU A 99 -89.53 -110.90 REMARK 500 7 HIS A 29 -80.87 -121.93 REMARK 500 7 PHE A 34 108.40 -53.64 REMARK 500 7 GLU A 99 -91.32 -99.97 REMARK 500 7 ILE A 169 -165.64 -105.96 REMARK 500 8 ALA A 44 -52.80 -127.90 REMARK 500 8 GLU A 99 -42.40 -151.46 REMARK 500 9 HIS A 29 -80.37 -124.53 REMARK 500 9 ASP A 35 57.29 -106.33 REMARK 500 9 ARG A 42 47.39 -105.83 REMARK 500 9 ALA A 44 64.90 -173.22 REMARK 500 9 GLU A 99 -89.88 -148.11 REMARK 500 10 THR A 3 82.54 59.46 REMARK 500 10 GLN A 27 -104.15 -102.01 REMARK 500 10 ARG A 28 -42.82 -136.37 REMARK 500 10 ALA A 44 -55.94 -129.15 REMARK 500 10 LEU A 95 -0.82 -58.11 REMARK 500 10 ARG A 96 31.96 -69.39 REMARK 500 10 HIS A 98 -75.14 -81.34 REMARK 500 10 GLU A 99 -97.37 -142.38 REMARK 500 11 ILE A 21 -71.95 -108.00 REMARK 500 11 ARG A 42 48.09 -106.99 REMARK 500 11 ALA A 44 59.27 -176.63 REMARK 500 11 GLU A 99 -85.23 -65.15 REMARK 500 11 PRO A 139 -8.41 -49.70 REMARK 500 12 HIS A 29 -63.07 -133.08 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26026 RELATED DB: BMRB DBREF 2NCJ A 1 171 UNP A7MJV9 A7MJV9_CROS8 1 171 SEQRES 1 A 171 MET ARG THR PRO LEU LEU LEU GLN SER LEU LYS THR ARG SEQRES 2 A 171 VAL ALA ALA LEU HIS THR LEU ILE GLY PRO LEU ALA SER SEQRES 3 A 171 GLN ARG HIS PHE SER PRO ARG PHE ASP ARG GLN LEU PHE SEQRES 4 A 171 ALA CYS ARG GLY ALA ARG LEU GLY ASP TYR LEU THR GLU SEQRES 5 A 171 ALA GLU GLU SER LEU THR HIS LEU GLU ALA ALA VAL ASN SEQRES 6 A 171 GLN GLY ASP ALA THR ARG VAL ALA TRP LEU ALA GLU ARG SEQRES 7 A 171 LEU ALA ALA GLN ILE GLU ALA LEU GLN ARG GLU ALA ALA SEQRES 8 A 171 THR ALA THR LEU ARG ARG HIS GLU ASN ALA HIS LEU PRO SEQRES 9 A 171 GLY GLY ARG LEU HIS ALA ARG LEU ALA GLU TYR GLN GLU SEQRES 10 A 171 TYR GLU ARG ARG LEU LEU ALA MET LYS ASN GLU ARG GLU SEQRES 11 A 171 GLN ARG TYR ALA GLU ARG HIS ASP PRO GLN LEU ALA ARG SEQRES 12 A 171 GLU ILE THR ALA LEU ASP GLU ARG LEU THR ARG CYS ARG SEQRES 13 A 171 THR ALA ILE ALA ARG THR GLU ARG ALA LEU GLU ARG ILE SEQRES 14 A 171 THR ARG HELIX 1 1 LEU A 5 ILE A 21 1 17 HELIX 2 2 ARG A 45 ASN A 65 1 21 HELIX 3 3 ASP A 68 THR A 94 1 27 HELIX 4 4 GLY A 106 GLU A 135 1 30 HELIX 5 5 PRO A 139 ILE A 169 1 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1