HEADER ISOMERASE 05-MAY-16 2ND5 TITLE LYSINE DIMETHYLATED FKBP12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FKBP-12, IMMUNOPHILIN FKBP12; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FKBP1A, FKBP1, FKBP12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX KEYWDS LYSINE, SALT BRIDGE, METHYLATION, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.HATTORI,J.SEBERA,V.SYCHROVSKY,K.FURUITA,T.SUGIKI,I.OHKI,T.IKEGAMI, AUTHOR 2 N.KOBAYASHI,Y.TANAKA,T.FUJIWARA,C.KOJIMA REVDAT 1 17-MAY-17 2ND5 0 JRNL AUTH Y.HATTORI,J.SEBERA,V.SYCHROVSKY,K.FURUITA,T.SUGIKI,I.OHKI, JRNL AUTH 2 T.IKEGAMI,N.KOBAYASHI,Y.TANAKA,T.FUJIWARA,C.KOJIMA JRNL TITL NMR OBSERVATION OF PROTEIN SURFACE SALT BRIDGES AT NEUTRAL JRNL TITL 2 PH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ND5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000104715. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-99% 15N] REMARK 210 ENTITY-1, 30 MM SODIUM CHLORIDE- REMARK 210 2, 3 MM DTT-3, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-1H NOESY; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HN(CA) REMARK 210 CO; 3D HNCO; 3D HBHA(CO)NH; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : MAGRO-NMRVIEW, CYANA 2.1, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A -1 126.56 62.87 REMARK 500 1 MET A 0 125.86 63.13 REMARK 500 1 LEU A 30 172.01 -57.53 REMARK 500 1 ASP A 37 110.50 -179.58 REMARK 500 1 TYR A 82 -51.21 -134.21 REMARK 500 1 THR A 85 -60.35 -100.44 REMARK 500 2 SER A -1 -47.84 -131.43 REMARK 500 2 MET A 0 -45.81 -135.95 REMARK 500 2 LEU A 30 172.12 -56.16 REMARK 500 2 ASP A 37 111.47 176.54 REMARK 500 2 TYR A 82 -53.46 -132.61 REMARK 500 2 THR A 85 -60.38 -100.10 REMARK 500 3 LEU A 30 170.42 -56.25 REMARK 500 3 ASP A 37 111.36 175.50 REMARK 500 3 TYR A 82 -50.70 75.25 REMARK 500 3 THR A 85 -60.19 -97.88 REMARK 500 4 MET A 0 125.58 46.52 REMARK 500 4 LEU A 30 170.85 -57.31 REMARK 500 4 ASP A 37 111.54 -167.18 REMARK 500 4 TYR A 82 -51.98 -134.55 REMARK 500 4 THR A 85 -60.37 -100.21 REMARK 500 5 LEU A 30 171.10 -57.25 REMARK 500 5 ASP A 37 111.62 -166.81 REMARK 500 5 TYR A 82 -52.09 -135.10 REMARK 500 5 THR A 85 -60.32 -100.07 REMARK 500 6 SER A -1 137.48 63.69 REMARK 500 6 LEU A 30 170.96 -58.50 REMARK 500 6 ASP A 37 111.55 -165.46 REMARK 500 6 TYR A 82 -54.00 -133.85 REMARK 500 6 THR A 85 -60.33 -100.63 REMARK 500 7 SER A -1 118.37 61.91 REMARK 500 7 LEU A 30 170.77 -57.50 REMARK 500 7 ASP A 37 111.51 -161.68 REMARK 500 7 TYR A 82 -52.71 -134.81 REMARK 500 7 THR A 85 -60.23 -100.03 REMARK 500 8 LEU A 30 172.12 -57.19 REMARK 500 8 ASP A 37 110.45 179.98 REMARK 500 8 TYR A 82 -50.99 -133.46 REMARK 500 8 THR A 85 -60.33 -99.51 REMARK 500 9 LEU A 30 170.18 -57.04 REMARK 500 9 ASP A 37 111.47 -160.89 REMARK 500 9 TYR A 82 -52.51 -134.59 REMARK 500 9 THR A 85 -60.33 -100.10 REMARK 500 10 LEU A 30 171.83 -55.52 REMARK 500 10 ASP A 37 111.34 177.00 REMARK 500 10 TYR A 82 -53.66 -132.17 REMARK 500 10 THR A 85 -60.38 -100.13 REMARK 500 11 LEU A 30 172.03 -57.18 REMARK 500 11 ASP A 37 110.50 -179.70 REMARK 500 11 GLN A 53 30.95 70.17 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26047 RELATED DB: BMRB DBREF 2ND5 A 0 107 UNP P62942 FKB1A_HUMAN 1 108 SEQADV 2ND5 GLY A -3 UNP P62942 EXPRESSION TAG SEQADV 2ND5 PRO A -2 UNP P62942 EXPRESSION TAG SEQADV 2ND5 SER A -1 UNP P62942 EXPRESSION TAG SEQRES 1 A 111 GLY PRO SER MET GLY VAL GLN VAL GLU THR ILE SER PRO SEQRES 2 A 111 GLY ASP GLY ARG THR PHE PRO MLY ARG GLY GLN THR CYS SEQRES 3 A 111 VAL VAL HIS TYR THR GLY MET LEU GLU ASP GLY MLY MLY SEQRES 4 A 111 PHE ASP SER SER ARG ASP ARG ASN MLY PRO PHE MLY PHE SEQRES 5 A 111 MET LEU GLY MLY GLN GLU VAL ILE ARG GLY TRP GLU GLU SEQRES 6 A 111 GLY VAL ALA GLN MET SER VAL GLY GLN ARG ALA MLY LEU SEQRES 7 A 111 THR ILE SER PRO ASP TYR ALA TYR GLY ALA THR GLY HIS SEQRES 8 A 111 PRO GLY ILE ILE PRO PRO HIS ALA THR LEU VAL PHE ASP SEQRES 9 A 111 VAL GLU LEU LEU MLY LEU GLU MODRES 2ND5 MLY A 17 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 34 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 35 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 44 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 47 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 52 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 73 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 105 LYS N-DIMETHYL-LYSINE HET MLY A 17 27 HET MLY A 34 27 HET MLY A 35 27 HET MLY A 44 27 HET MLY A 47 27 HET MLY A 52 27 HET MLY A 73 27 HET MLY A 105 27 HETNAM MLY N-DIMETHYL-LYSINE FORMUL 1 MLY 8(C8 H18 N2 O2) HELIX 1 1 ARG A 40 ASN A 43 5 4 HELIX 2 2 ILE A 56 VAL A 63 1 8 HELIX 3 3 ALA A 64 MET A 66 5 3 HELIX 4 4 SER A 77 TYR A 82 1 6 SHEET 1 A 5 VAL A 2 SER A 8 0 SHEET 2 A 5 ARG A 71 ILE A 76 -1 O ARG A 71 N ILE A 7 SHEET 3 A 5 LEU A 97 LEU A 106 -1 O LEU A 97 N ILE A 76 SHEET 4 A 5 THR A 27 LEU A 30 -1 N MET A 29 O VAL A 98 SHEET 5 A 5 MLY A 35 SER A 38 -1 O ASP A 37 N GLY A 28 SHEET 1 B 5 VAL A 2 SER A 8 0 SHEET 2 B 5 ARG A 71 ILE A 76 -1 O ARG A 71 N ILE A 7 SHEET 3 B 5 LEU A 97 LEU A 106 -1 O LEU A 97 N ILE A 76 SHEET 4 B 5 THR A 21 HIS A 25 -1 N VAL A 23 O MLY A 105 SHEET 5 B 5 PHE A 46 MET A 49 -1 O PHE A 46 N VAL A 24 LINK C PRO A 16 N MLY A 17 1555 1555 1.34 LINK C MLY A 17 N ARG A 18 1555 1555 1.34 LINK C GLY A 33 N MLY A 34 1555 1555 1.34 LINK C MLY A 34 N MLY A 35 1555 1555 1.34 LINK C MLY A 35 N PHE A 36 1555 1555 1.33 LINK C ASN A 43 N MLY A 44 1555 1555 1.35 LINK C MLY A 44 N PRO A 45 1555 1555 1.37 LINK C PHE A 46 N MLY A 47 1555 1555 1.34 LINK C MLY A 47 N PHE A 48 1555 1555 1.34 LINK C GLY A 51 N MLY A 52 1555 1555 1.35 LINK C MLY A 52 N GLN A 53 1555 1555 1.35 LINK C ALA A 72 N MLY A 73 1555 1555 1.34 LINK C MLY A 73 N LEU A 74 1555 1555 1.34 LINK C LEU A 104 N MLY A 105 1555 1555 1.35 LINK C MLY A 105 N LEU A 106 1555 1555 1.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1