data_2NDB # _entry.id 2NDB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104721 RCSB ? ? 2NDB PDB pdb_00002ndb 10.2210/pdb2ndb/pdb 26054 BMRB ? ? D_1000104721 WWPDB ? ? # _pdbx_database_related.db_id 26054 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2NDB _pdbx_database_status.methods_development_category ? _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2016-05-12 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ryu, J.H.' 1 ? 'Kim, J.I.' 2 ? # _citation.id primary _citation.title 'Structure-activity relationships of omega-Agatoxin IVA in lipid membranes' _citation.journal_abbrev 'Biochem. Biophys. Res. Commun.' _citation.journal_volume 482 _citation.page_first 170 _citation.page_last 175 _citation.year 2017 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 1090-2104 _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27838299 _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2016.11.025 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ryu, J.H.' 1 ? primary 'Jung, H.J.' 2 ? primary 'Konishi, S.' 3 ? primary 'Kim, H.H.' 4 ? primary 'Park, Z.Y.' 5 ? primary 'Kim, J.I.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Omega-agatoxin-Aa4a _entity.formula_weight 5277.445 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Omega-AGTX-Aa4a, Omega-agatoxin IVA, Omega-Aga-IVA, Omega-agatoxin-4A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GKKKCIAKDYGRCKWGGTPCCRGRGCICSIMGTNCECKPRLIMEGLGLA _entity_poly.pdbx_seq_one_letter_code_can GKKKCIAKDYGRCKWGGTPCCRGRGCICSIMGTNCECKPRLIMEGLGLA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LYS n 1 3 LYS n 1 4 LYS n 1 5 CYS n 1 6 ILE n 1 7 ALA n 1 8 LYS n 1 9 ASP n 1 10 TYR n 1 11 GLY n 1 12 ARG n 1 13 CYS n 1 14 LYS n 1 15 TRP n 1 16 GLY n 1 17 GLY n 1 18 THR n 1 19 PRO n 1 20 CYS n 1 21 CYS n 1 22 ARG n 1 23 GLY n 1 24 ARG n 1 25 GLY n 1 26 CYS n 1 27 ILE n 1 28 CYS n 1 29 SER n 1 30 ILE n 1 31 MET n 1 32 GLY n 1 33 THR n 1 34 ASN n 1 35 CYS n 1 36 GLU n 1 37 CYS n 1 38 LYS n 1 39 PRO n 1 40 ARG n 1 41 LEU n 1 42 ILE n 1 43 MET n 1 44 GLU n 1 45 GLY n 1 46 LEU n 1 47 GLY n 1 48 LEU n 1 49 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'North American funnel-web spider' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Agelenopsis aperta' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6908 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET31b _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TOG4A_AGEAP _struct_ref.pdbx_db_accession P30288 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KKKCIAKDYGRCKWGGTPCCRGRGCICSIMGTNCECKPRLIMEGLGLA _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2NDB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 49 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P30288 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 48 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 49 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2NDB _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P30288 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D DQF-COSY' 1 3 1 '2D 1H-1H NOESY' 1 4 1 '2D 1H-15N HSQC' 1 5 1 '3D 1H-15N NOESY' 1 6 1 '3D 1H-15N TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 4.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 310 # _pdbx_nmr_sample_details.contents '50 mM [U-100% 2H] DPC-1, d38-DPC' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system d38-DPC # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2NDB _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2NDB _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 14 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2NDB _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version 'Guntert, Mumenthaler and Wuthrich' 'chemical shift assignment' CYANA 1 ? ? refinement 'X-PLOR NIH' 2 ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2NDB _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2NDB _struct.title 'NMR structure of omega-agatoxin IVA in DPC micelles' _struct.pdbx_model_details 'lowest energy, model14' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NDB _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'NEUROTOXIN, TOXIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 21 SG ? ? A CYS 5 A CYS 21 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf2 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 26 SG ? ? A CYS 13 A CYS 26 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf3 disulf ? ? A CYS 20 SG ? ? ? 1_555 A CYS 37 SG ? ? A CYS 20 A CYS 37 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf4 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 35 SG ? ? A CYS 28 A CYS 35 1_555 ? ? ? ? ? ? ? 2.021 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 11 ? ARG A 12 ? GLY A 11 ARG A 12 A 2 GLU A 36 ? LYS A 38 ? GLU A 36 LYS A 38 A 3 GLY A 25 ? ILE A 27 ? GLY A 25 ILE A 27 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 11 ? N GLY A 11 O CYS A 37 ? O CYS A 37 A 2 3 O LYS A 38 ? O LYS A 38 N GLY A 25 ? N GLY A 25 # _atom_sites.entry_id 2NDB _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 CYS 20 20 20 CYS CYS A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 MET 31 31 31 MET MET A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 CYS 35 35 35 CYS CYS A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 MET 43 43 43 MET MET A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ALA 49 49 49 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-09-13 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_software 4 2 'Structure model' pdbx_nmr_spectrometer 5 2 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_software.name' 5 2 'Structure model' '_pdbx_nmr_spectrometer.model' 6 2 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_nmr_exptl_sample.component DPC-1 _pdbx_nmr_exptl_sample.concentration 50 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-100% 2H]' _pdbx_nmr_exptl_sample.solution_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 10 H A GLY 23 ? ? HH11 A ARG 24 ? ? 1.29 2 14 O A GLY 11 ? ? H A CYS 37 ? ? 1.57 3 16 HZ2 A LYS 4 ? ? H A CYS 5 ? ? 1.28 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 2 ? ? 55.70 5.40 2 1 CYS A 5 ? ? -135.05 -118.59 3 1 ASP A 9 ? ? 68.07 -66.68 4 1 ARG A 12 ? ? -39.61 111.06 5 1 THR A 18 ? ? -39.07 102.74 6 1 PRO A 19 ? ? -50.89 -170.31 7 1 CYS A 20 ? ? -153.44 80.93 8 1 SER A 29 ? ? -64.97 -177.03 9 1 THR A 33 ? ? -147.39 -29.53 10 1 ASN A 34 ? ? -90.47 53.73 11 1 LEU A 46 ? ? -129.39 -62.26 12 2 LYS A 2 ? ? 69.48 149.89 13 2 LYS A 3 ? ? 66.09 62.95 14 2 CYS A 5 ? ? -55.89 -78.91 15 2 ALA A 7 ? ? 79.37 -55.57 16 2 LYS A 8 ? ? -80.60 -142.44 17 2 ASP A 9 ? ? -131.90 -112.65 18 2 PRO A 19 ? ? -74.07 -159.61 19 2 CYS A 20 ? ? -171.97 95.47 20 2 CYS A 21 ? ? -42.52 -85.07 21 2 THR A 33 ? ? -122.97 -50.70 22 2 LEU A 48 ? ? -150.04 -40.78 23 3 LYS A 2 ? ? -153.74 84.31 24 3 LYS A 3 ? ? -177.56 20.61 25 3 CYS A 5 ? ? -45.54 -96.64 26 3 LYS A 8 ? ? -111.84 -119.73 27 3 ASP A 9 ? ? -173.72 -42.62 28 3 ARG A 12 ? ? -37.42 130.31 29 3 PRO A 19 ? ? -71.10 -160.43 30 3 CYS A 20 ? ? -160.98 90.45 31 3 CYS A 21 ? ? -49.81 -83.01 32 3 THR A 33 ? ? -131.15 -49.54 33 3 ASN A 34 ? ? -77.12 46.27 34 3 PRO A 39 ? ? -70.56 -162.84 35 3 GLU A 44 ? ? -63.04 -106.73 36 3 LEU A 48 ? ? -153.78 -41.21 37 4 LYS A 2 ? ? 53.76 15.52 38 4 CYS A 5 ? ? -85.72 -100.54 39 4 ASP A 9 ? ? 61.18 135.18 40 4 TYR A 10 ? ? 49.99 176.35 41 4 LYS A 14 ? ? -160.72 104.88 42 4 THR A 18 ? ? -38.84 101.88 43 4 CYS A 20 ? ? 66.17 91.05 44 4 CYS A 21 ? ? -36.25 -73.08 45 4 THR A 33 ? ? -142.25 -30.43 46 4 ASN A 34 ? ? -84.50 46.34 47 4 MET A 43 ? ? -43.38 166.24 48 4 GLU A 44 ? ? -48.33 -14.71 49 5 LYS A 2 ? ? -141.80 -89.88 50 5 LYS A 3 ? ? -164.03 -159.57 51 5 CYS A 5 ? ? 77.77 171.98 52 5 ILE A 6 ? ? -51.34 -172.13 53 5 LYS A 8 ? ? -169.11 -13.72 54 5 ASP A 9 ? ? 65.04 127.22 55 5 TYR A 10 ? ? 50.00 178.69 56 5 THR A 18 ? ? -36.02 95.66 57 5 CYS A 21 ? ? -50.35 -71.67 58 5 THR A 33 ? ? -146.23 -12.15 59 5 CYS A 35 ? ? -56.14 105.82 60 5 GLU A 44 ? ? -75.26 38.10 61 5 LEU A 46 ? ? 39.46 55.44 62 6 LYS A 2 ? ? 47.56 -168.36 63 6 LYS A 3 ? ? -47.46 169.02 64 6 LYS A 4 ? ? -81.20 -80.82 65 6 CYS A 5 ? ? 35.87 -110.40 66 6 ASP A 9 ? ? -36.62 133.90 67 6 TYR A 10 ? ? 56.51 158.67 68 6 PRO A 19 ? ? -72.07 -159.86 69 6 CYS A 20 ? ? -160.93 81.72 70 6 THR A 33 ? ? -140.77 -33.66 71 6 ASN A 34 ? ? -95.71 47.58 72 6 PRO A 39 ? ? -62.16 -148.40 73 7 LYS A 2 ? ? 50.54 90.23 74 7 LYS A 4 ? ? -105.39 -165.21 75 7 CYS A 5 ? ? 37.21 -119.56 76 7 ALA A 7 ? ? 79.27 -61.95 77 7 LYS A 8 ? ? -65.55 -164.32 78 7 TYR A 10 ? ? 52.38 178.38 79 7 THR A 18 ? ? -37.28 100.01 80 7 PRO A 19 ? ? -54.32 -145.78 81 7 CYS A 20 ? ? -170.98 90.31 82 7 CYS A 21 ? ? -45.68 -79.55 83 7 THR A 33 ? ? -143.51 -24.36 84 7 ASN A 34 ? ? -98.74 54.44 85 7 ARG A 40 ? ? -90.96 -133.67 86 7 MET A 43 ? ? -46.69 151.69 87 8 LYS A 3 ? ? -92.05 58.68 88 8 LYS A 4 ? ? -132.59 -129.56 89 8 CYS A 5 ? ? 37.87 -119.20 90 8 ALA A 7 ? ? 71.40 -55.45 91 8 LYS A 8 ? ? -52.86 -4.51 92 8 ASP A 9 ? ? 63.44 -75.36 93 8 CYS A 20 ? ? 47.41 90.16 94 8 CYS A 21 ? ? -39.40 -86.00 95 8 THR A 33 ? ? -142.63 -38.59 96 8 ASN A 34 ? ? -79.64 49.68 97 8 PRO A 39 ? ? -68.61 -164.93 98 8 ARG A 40 ? ? -46.08 172.84 99 8 GLU A 44 ? ? -47.90 -13.88 100 9 LYS A 4 ? ? -79.81 -112.16 101 9 CYS A 5 ? ? 37.48 -121.61 102 9 ASP A 9 ? ? 78.82 117.35 103 9 TYR A 10 ? ? 53.76 168.32 104 9 CYS A 20 ? ? 80.73 27.39 105 9 CYS A 21 ? ? 34.40 -84.10 106 9 CYS A 26 ? ? -67.17 82.78 107 9 THR A 33 ? ? -148.76 -32.33 108 9 PRO A 39 ? ? -69.55 -91.92 109 9 ARG A 40 ? ? 47.57 103.40 110 9 LEU A 48 ? ? -130.17 -40.75 111 10 CYS A 5 ? ? 33.68 -88.72 112 10 ALA A 7 ? ? 82.52 -62.41 113 10 LYS A 8 ? ? -60.73 -140.05 114 10 ASP A 9 ? ? -140.39 -149.97 115 10 TYR A 10 ? ? -40.95 163.55 116 10 LYS A 14 ? ? -160.01 115.66 117 10 THR A 18 ? ? -39.82 104.59 118 10 PRO A 19 ? ? -79.02 -163.93 119 10 CYS A 21 ? ? -38.15 -75.36 120 10 THR A 33 ? ? -131.95 -33.54 121 10 ASN A 34 ? ? -86.49 42.52 122 10 PRO A 39 ? ? -68.30 -168.75 123 10 LEU A 46 ? ? -58.82 -113.26 124 10 LEU A 48 ? ? -147.37 -41.10 125 11 CYS A 5 ? ? -54.15 -172.57 126 11 ILE A 6 ? ? -50.02 -178.87 127 11 ALA A 7 ? ? -35.59 -89.94 128 11 LYS A 8 ? ? -175.70 73.28 129 11 ASP A 9 ? ? 162.38 -109.33 130 11 LYS A 14 ? ? -160.12 91.89 131 11 TRP A 15 ? ? -49.51 -81.96 132 11 CYS A 21 ? ? -50.85 -97.20 133 11 ARG A 24 ? ? -144.95 -14.34 134 11 ASN A 34 ? ? -101.44 50.89 135 11 PRO A 39 ? ? -69.88 -167.96 136 12 CYS A 5 ? ? -47.09 174.47 137 12 ALA A 7 ? ? 66.82 -36.60 138 12 ASP A 9 ? ? 42.95 -110.39 139 12 CYS A 21 ? ? -53.31 -72.56 140 12 THR A 33 ? ? -145.04 -17.52 141 12 ASN A 34 ? ? -107.74 51.07 142 12 PRO A 39 ? ? -46.05 -178.34 143 12 ILE A 42 ? ? -52.09 -171.66 144 12 GLU A 44 ? ? -78.76 33.18 145 13 LYS A 2 ? ? -171.06 90.49 146 13 LYS A 3 ? ? 46.09 -160.94 147 13 CYS A 5 ? ? -46.33 -99.43 148 13 ALA A 7 ? ? -136.44 -30.19 149 13 ASP A 9 ? ? 58.92 125.45 150 13 TYR A 10 ? ? 55.97 160.60 151 13 TRP A 15 ? ? -42.05 154.95 152 13 PRO A 19 ? ? -51.49 -161.60 153 13 CYS A 20 ? ? -171.92 61.18 154 13 THR A 33 ? ? -137.40 -36.06 155 13 ASN A 34 ? ? -94.76 54.15 156 13 PRO A 39 ? ? -67.31 -168.14 157 13 ARG A 40 ? ? -78.10 -167.94 158 13 LEU A 46 ? ? 43.59 96.51 159 13 LEU A 48 ? ? -157.71 -39.70 160 14 LYS A 3 ? ? 55.09 -179.83 161 14 LYS A 4 ? ? -86.18 -105.37 162 14 CYS A 5 ? ? 38.55 -118.91 163 14 ALA A 7 ? ? 73.64 -56.14 164 14 LYS A 8 ? ? -49.17 -14.04 165 14 ASP A 9 ? ? 59.10 -76.09 166 14 ARG A 12 ? ? -39.68 130.66 167 14 LYS A 14 ? ? -160.64 115.53 168 14 CYS A 20 ? ? 58.16 87.26 169 14 CYS A 21 ? ? -37.17 -76.47 170 14 CYS A 26 ? ? -68.89 90.77 171 14 THR A 33 ? ? -150.21 -28.88 172 14 ASN A 34 ? ? -93.85 53.93 173 14 PRO A 39 ? ? -66.85 -85.05 174 14 ARG A 40 ? ? -127.81 -120.76 175 14 MET A 43 ? ? -68.38 99.75 176 15 LYS A 2 ? ? -141.93 -76.79 177 15 LYS A 3 ? ? -74.41 -163.31 178 15 CYS A 5 ? ? -71.87 -120.71 179 15 ALA A 7 ? ? 68.60 -64.56 180 15 LYS A 8 ? ? -56.61 -164.26 181 15 TYR A 10 ? ? 54.42 167.80 182 15 LYS A 14 ? ? -160.40 108.14 183 15 CYS A 20 ? ? 67.55 100.93 184 15 CYS A 21 ? ? -58.63 -83.97 185 15 THR A 33 ? ? -139.47 -35.02 186 15 ASN A 34 ? ? -95.15 50.85 187 15 ARG A 40 ? ? -142.21 -88.14 188 15 LEU A 41 ? ? 52.19 170.64 189 15 MET A 43 ? ? 57.10 0.92 190 15 LEU A 46 ? ? -114.22 -156.15 191 15 LEU A 48 ? ? -159.34 -42.05 192 16 LYS A 3 ? ? 31.22 -109.74 193 16 LYS A 4 ? ? -140.65 -45.29 194 16 CYS A 5 ? ? 29.15 -92.36 195 16 ILE A 6 ? ? -141.95 -0.19 196 16 ALA A 7 ? ? 80.35 -64.31 197 16 LYS A 8 ? ? -53.61 -170.28 198 16 ASP A 9 ? ? -126.78 -155.22 199 16 TYR A 10 ? ? -45.01 155.40 200 16 PRO A 19 ? ? -52.46 -156.28 201 16 CYS A 20 ? ? -165.27 92.77 202 16 CYS A 21 ? ? -41.45 -77.62 203 16 THR A 33 ? ? -150.60 -31.33 204 16 ASN A 34 ? ? -89.44 32.22 205 16 CYS A 35 ? ? -51.46 105.11 206 16 PRO A 39 ? ? -71.30 -166.12 207 16 ARG A 40 ? ? -72.63 -139.08 208 16 LEU A 48 ? ? -141.41 -40.98 209 17 CYS A 5 ? ? -59.77 -145.03 210 17 ILE A 6 ? ? -39.49 -28.04 211 17 ALA A 7 ? ? 68.05 -57.73 212 17 LYS A 8 ? ? -44.55 -16.57 213 17 ASP A 9 ? ? 72.60 111.02 214 17 TYR A 10 ? ? 55.87 169.67 215 17 THR A 18 ? ? -40.45 109.26 216 17 CYS A 21 ? ? -95.34 -79.47 217 17 THR A 33 ? ? -145.18 -34.15 218 17 ASN A 34 ? ? -90.62 53.80 219 17 PRO A 39 ? ? -70.08 -165.05 220 17 ARG A 40 ? ? -94.26 -155.21 221 17 LEU A 41 ? ? -92.31 56.50 222 17 MET A 43 ? ? -156.63 -6.15 223 17 GLU A 44 ? ? -63.35 72.51 224 17 LEU A 48 ? ? -136.60 -40.44 225 18 CYS A 5 ? ? -162.28 -130.12 226 18 ASP A 9 ? ? 60.11 133.85 227 18 TYR A 10 ? ? 44.29 -170.59 228 18 THR A 18 ? ? -38.32 102.59 229 18 PRO A 19 ? ? -79.97 -163.03 230 18 CYS A 21 ? ? -51.64 -81.98 231 18 ARG A 24 ? ? -78.43 25.01 232 18 THR A 33 ? ? -158.74 -0.66 233 18 CYS A 35 ? ? -54.74 104.83 234 18 ARG A 40 ? ? 54.09 166.96 235 18 LEU A 46 ? ? -104.30 47.68 236 18 LEU A 48 ? ? -159.47 -41.42 237 19 CYS A 5 ? ? 59.72 -73.87 238 19 ALA A 7 ? ? 68.61 -37.82 239 19 ASP A 9 ? ? 56.92 126.23 240 19 TYR A 10 ? ? 64.11 114.56 241 19 PRO A 19 ? ? -71.90 -160.84 242 19 CYS A 20 ? ? -165.27 103.01 243 19 CYS A 21 ? ? -65.43 -89.31 244 19 ARG A 24 ? ? -79.45 27.89 245 19 CYS A 35 ? ? -49.49 91.42 246 19 LEU A 41 ? ? -128.49 -169.93 247 19 LEU A 46 ? ? -73.54 -78.77 248 20 LYS A 3 ? ? 45.45 -110.64 249 20 CYS A 5 ? ? -130.31 -95.59 250 20 ASP A 9 ? ? 36.20 -121.52 251 20 ARG A 12 ? ? -37.74 119.26 252 20 PRO A 19 ? ? -69.52 -170.19 253 20 CYS A 21 ? ? -40.71 -84.32 254 20 ARG A 22 ? ? -90.85 41.31 255 20 ARG A 24 ? ? -144.85 -25.62 256 20 THR A 33 ? ? -142.86 -25.73 257 20 ASN A 34 ? ? -100.41 46.58 258 20 LEU A 41 ? ? 45.42 94.55 259 20 MET A 43 ? ? -43.06 156.80 260 20 LEU A 46 ? ? 39.51 26.05 261 20 LEU A 48 ? ? -148.92 -40.14 #