data_2NDK # _entry.id 2NDK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104730 RCSB ? ? 2NDK PDB pdb_00002ndk 10.2210/pdb2ndk/pdb 26063 BMRB ? 10.13018/BMR26063 D_1000104730 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-07-05 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2019-10-16 4 'Structure model' 1 3 2023-06-14 5 'Structure model' 1 4 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Experimental preparation' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' 'Database references' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' audit_author 4 3 'Structure model' pdbx_nmr_sample_details 5 3 'Structure model' pdbx_nmr_spectrometer 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_database_status 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond 10 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_audit_author.name' 13 3 'Structure model' '_pdbx_nmr_sample_details.contents' 14 3 'Structure model' '_pdbx_nmr_spectrometer.model' 15 4 'Structure model' '_database_2.pdbx_DOI' 16 4 'Structure model' '_database_2.pdbx_database_accession' 17 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 18 5 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2NDK _pdbx_database_status.methods_development_category ? _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2016-06-29 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # _pdbx_database_related.db_id 26063 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tan, K.W.' 1 ? 'Mok, Y.K.' 2 ? # _citation.id primary _citation.title 'Structural basis for the bacterial membrane insertion of dermcidin peptide, DCD-1L.' _citation.journal_abbrev 'Sci Rep' _citation.journal_volume 7 _citation.page_first 13923 _citation.page_last 13923 _citation.year 2017 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2045-2322 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 29066724 _citation.pdbx_database_id_DOI 10.1038/s41598-017-13600-z # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nguyen, V.S.' 1 ? primary 'Tan, K.W.' 2 ? primary 'Ramesh, K.' 3 ? primary 'Chew, F.T.' 4 ? primary 'Mok, Y.K.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Dermcidin _entity.formula_weight 4826.503 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.4.-.- _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 63-110' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Preproteolysin, Survival-promoting peptide, DCD-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGAVHDVKDVLDSVL _entity_poly.pdbx_seq_one_letter_code_can SSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGAVHDVKDVLDSVL _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 LEU n 1 4 LEU n 1 5 GLU n 1 6 LYS n 1 7 GLY n 1 8 LEU n 1 9 ASP n 1 10 GLY n 1 11 ALA n 1 12 LYS n 1 13 LYS n 1 14 ALA n 1 15 VAL n 1 16 GLY n 1 17 GLY n 1 18 LEU n 1 19 GLY n 1 20 LYS n 1 21 LEU n 1 22 GLY n 1 23 LYS n 1 24 ASP n 1 25 ALA n 1 26 VAL n 1 27 GLU n 1 28 ASP n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 VAL n 1 33 GLY n 1 34 LYS n 1 35 GLY n 1 36 ALA n 1 37 VAL n 1 38 HIS n 1 39 ASP n 1 40 VAL n 1 41 LYS n 1 42 ASP n 1 43 VAL n 1 44 LEU n 1 45 ASP n 1 46 SER n 1 47 VAL n 1 48 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DCD, AIDD, DSEP' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector N.A. _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 LEU 48 48 48 LEU LEU A . n # _exptl.entry_id 2NDK _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2NDK _struct.title '20 lowest energy ensemble of dermcidin (DCD1L) NMR structure' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NDK _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Dermcidin, antimicrobial, DCD1L, HYDROLASE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCD_HUMAN _struct_ref.pdbx_db_accession P81605 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGAVHDVKDVLDSVL _struct_ref.pdbx_align_begin 63 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2NDK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 48 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P81605 _struct_ref_seq.db_align_beg 63 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 110 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 48 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 2 ? GLY A 22 ? SER A 2 GLY A 22 1 ? 21 HELX_P HELX_P2 2 GLY A 22 ? SER A 31 ? GLY A 22 SER A 31 1 ? 10 HELX_P HELX_P3 3 VAL A 32 ? LEU A 48 ? VAL A 32 LEU A 48 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 32 ? ? -65.47 -123.62 2 2 VAL A 32 ? ? -65.96 -123.68 3 3 VAL A 32 ? ? -65.17 -123.48 4 4 VAL A 32 ? ? -66.00 -123.77 5 5 SER A 2 ? ? 60.72 97.41 6 5 VAL A 32 ? ? -65.90 -123.94 7 6 VAL A 32 ? ? -65.81 -123.94 8 7 VAL A 32 ? ? -65.71 -123.84 9 8 VAL A 32 ? ? -66.39 -123.93 10 9 SER A 2 ? ? -170.16 94.38 11 9 VAL A 32 ? ? -65.88 -123.86 12 10 VAL A 32 ? ? -65.91 -123.76 13 11 VAL A 32 ? ? -65.58 -123.88 14 12 VAL A 32 ? ? -66.18 -123.98 15 13 VAL A 32 ? ? -65.81 -123.77 16 14 VAL A 32 ? ? -65.97 -123.90 17 15 VAL A 32 ? ? -65.43 -123.67 18 16 VAL A 32 ? ? -65.89 -123.80 19 17 SER A 2 ? ? -69.37 86.84 20 17 VAL A 32 ? ? -66.01 -123.89 21 18 VAL A 32 ? ? -65.93 -123.80 22 19 VAL A 32 ? ? -65.69 -123.88 23 20 SER A 2 ? ? 63.61 128.90 24 20 VAL A 32 ? ? -66.26 -123.66 # _pdbx_nmr_ensemble.entry_id 2NDK _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2NDK _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1 mM [U-100% 13C; U-100% 15N] TRIS-1' _pdbx_nmr_sample_details.solvent_system ? # _pdbx_nmr_exptl_sample.component TRIS-1 _pdbx_nmr_exptl_sample.concentration 1 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-100% 13C; U-100% 15N]' _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D 1H-15N HSQC' 1 2 1 '3D HNCACB' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D C(CO)NH' 1 5 1 '3D H(CCO)NH' 1 6 1 '3D 1H-15N NOESY' 1 # _pdbx_nmr_refine.entry_id 2NDK _pdbx_nmr_refine.method 'distance geometry' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'structure solution' CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 1 refinement CNS ? ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 GLU N N N N 30 GLU CA C N S 31 GLU C C N N 32 GLU O O N N 33 GLU CB C N N 34 GLU CG C N N 35 GLU CD C N N 36 GLU OE1 O N N 37 GLU OE2 O N N 38 GLU OXT O N N 39 GLU H H N N 40 GLU H2 H N N 41 GLU HA H N N 42 GLU HB2 H N N 43 GLU HB3 H N N 44 GLU HG2 H N N 45 GLU HG3 H N N 46 GLU HE2 H N N 47 GLU HXT H N N 48 GLY N N N N 49 GLY CA C N N 50 GLY C C N N 51 GLY O O N N 52 GLY OXT O N N 53 GLY H H N N 54 GLY H2 H N N 55 GLY HA2 H N N 56 GLY HA3 H N N 57 GLY HXT H N N 58 HIS N N N N 59 HIS CA C N S 60 HIS C C N N 61 HIS O O N N 62 HIS CB C N N 63 HIS CG C Y N 64 HIS ND1 N Y N 65 HIS CD2 C Y N 66 HIS CE1 C Y N 67 HIS NE2 N Y N 68 HIS OXT O N N 69 HIS H H N N 70 HIS H2 H N N 71 HIS HA H N N 72 HIS HB2 H N N 73 HIS HB3 H N N 74 HIS HD1 H N N 75 HIS HD2 H N N 76 HIS HE1 H N N 77 HIS HE2 H N N 78 HIS HXT H N N 79 LEU N N N N 80 LEU CA C N S 81 LEU C C N N 82 LEU O O N N 83 LEU CB C N N 84 LEU CG C N N 85 LEU CD1 C N N 86 LEU CD2 C N N 87 LEU OXT O N N 88 LEU H H N N 89 LEU H2 H N N 90 LEU HA H N N 91 LEU HB2 H N N 92 LEU HB3 H N N 93 LEU HG H N N 94 LEU HD11 H N N 95 LEU HD12 H N N 96 LEU HD13 H N N 97 LEU HD21 H N N 98 LEU HD22 H N N 99 LEU HD23 H N N 100 LEU HXT H N N 101 LYS N N N N 102 LYS CA C N S 103 LYS C C N N 104 LYS O O N N 105 LYS CB C N N 106 LYS CG C N N 107 LYS CD C N N 108 LYS CE C N N 109 LYS NZ N N N 110 LYS OXT O N N 111 LYS H H N N 112 LYS H2 H N N 113 LYS HA H N N 114 LYS HB2 H N N 115 LYS HB3 H N N 116 LYS HG2 H N N 117 LYS HG3 H N N 118 LYS HD2 H N N 119 LYS HD3 H N N 120 LYS HE2 H N N 121 LYS HE3 H N N 122 LYS HZ1 H N N 123 LYS HZ2 H N N 124 LYS HZ3 H N N 125 LYS HXT H N N 126 SER N N N N 127 SER CA C N S 128 SER C C N N 129 SER O O N N 130 SER CB C N N 131 SER OG O N N 132 SER OXT O N N 133 SER H H N N 134 SER H2 H N N 135 SER HA H N N 136 SER HB2 H N N 137 SER HB3 H N N 138 SER HG H N N 139 SER HXT H N N 140 VAL N N N N 141 VAL CA C N S 142 VAL C C N N 143 VAL O O N N 144 VAL CB C N N 145 VAL CG1 C N N 146 VAL CG2 C N N 147 VAL OXT O N N 148 VAL H H N N 149 VAL H2 H N N 150 VAL HA H N N 151 VAL HB H N N 152 VAL HG11 H N N 153 VAL HG12 H N N 154 VAL HG13 H N N 155 VAL HG21 H N N 156 VAL HG22 H N N 157 VAL HG23 H N N 158 VAL HXT H N N 159 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 GLU N CA sing N N 28 GLU N H sing N N 29 GLU N H2 sing N N 30 GLU CA C sing N N 31 GLU CA CB sing N N 32 GLU CA HA sing N N 33 GLU C O doub N N 34 GLU C OXT sing N N 35 GLU CB CG sing N N 36 GLU CB HB2 sing N N 37 GLU CB HB3 sing N N 38 GLU CG CD sing N N 39 GLU CG HG2 sing N N 40 GLU CG HG3 sing N N 41 GLU CD OE1 doub N N 42 GLU CD OE2 sing N N 43 GLU OE2 HE2 sing N N 44 GLU OXT HXT sing N N 45 GLY N CA sing N N 46 GLY N H sing N N 47 GLY N H2 sing N N 48 GLY CA C sing N N 49 GLY CA HA2 sing N N 50 GLY CA HA3 sing N N 51 GLY C O doub N N 52 GLY C OXT sing N N 53 GLY OXT HXT sing N N 54 HIS N CA sing N N 55 HIS N H sing N N 56 HIS N H2 sing N N 57 HIS CA C sing N N 58 HIS CA CB sing N N 59 HIS CA HA sing N N 60 HIS C O doub N N 61 HIS C OXT sing N N 62 HIS CB CG sing N N 63 HIS CB HB2 sing N N 64 HIS CB HB3 sing N N 65 HIS CG ND1 sing Y N 66 HIS CG CD2 doub Y N 67 HIS ND1 CE1 doub Y N 68 HIS ND1 HD1 sing N N 69 HIS CD2 NE2 sing Y N 70 HIS CD2 HD2 sing N N 71 HIS CE1 NE2 sing Y N 72 HIS CE1 HE1 sing N N 73 HIS NE2 HE2 sing N N 74 HIS OXT HXT sing N N 75 LEU N CA sing N N 76 LEU N H sing N N 77 LEU N H2 sing N N 78 LEU CA C sing N N 79 LEU CA CB sing N N 80 LEU CA HA sing N N 81 LEU C O doub N N 82 LEU C OXT sing N N 83 LEU CB CG sing N N 84 LEU CB HB2 sing N N 85 LEU CB HB3 sing N N 86 LEU CG CD1 sing N N 87 LEU CG CD2 sing N N 88 LEU CG HG sing N N 89 LEU CD1 HD11 sing N N 90 LEU CD1 HD12 sing N N 91 LEU CD1 HD13 sing N N 92 LEU CD2 HD21 sing N N 93 LEU CD2 HD22 sing N N 94 LEU CD2 HD23 sing N N 95 LEU OXT HXT sing N N 96 LYS N CA sing N N 97 LYS N H sing N N 98 LYS N H2 sing N N 99 LYS CA C sing N N 100 LYS CA CB sing N N 101 LYS CA HA sing N N 102 LYS C O doub N N 103 LYS C OXT sing N N 104 LYS CB CG sing N N 105 LYS CB HB2 sing N N 106 LYS CB HB3 sing N N 107 LYS CG CD sing N N 108 LYS CG HG2 sing N N 109 LYS CG HG3 sing N N 110 LYS CD CE sing N N 111 LYS CD HD2 sing N N 112 LYS CD HD3 sing N N 113 LYS CE NZ sing N N 114 LYS CE HE2 sing N N 115 LYS CE HE3 sing N N 116 LYS NZ HZ1 sing N N 117 LYS NZ HZ2 sing N N 118 LYS NZ HZ3 sing N N 119 LYS OXT HXT sing N N 120 SER N CA sing N N 121 SER N H sing N N 122 SER N H2 sing N N 123 SER CA C sing N N 124 SER CA CB sing N N 125 SER CA HA sing N N 126 SER C O doub N N 127 SER C OXT sing N N 128 SER CB OG sing N N 129 SER CB HB2 sing N N 130 SER CB HB3 sing N N 131 SER OG HG sing N N 132 SER OXT HXT sing N N 133 VAL N CA sing N N 134 VAL N H sing N N 135 VAL N H2 sing N N 136 VAL CA C sing N N 137 VAL CA CB sing N N 138 VAL CA HA sing N N 139 VAL C O doub N N 140 VAL C OXT sing N N 141 VAL CB CG1 sing N N 142 VAL CB CG2 sing N N 143 VAL CB HB sing N N 144 VAL CG1 HG11 sing N N 145 VAL CG1 HG12 sing N N 146 VAL CG1 HG13 sing N N 147 VAL CG2 HG21 sing N N 148 VAL CG2 HG22 sing N N 149 VAL CG2 HG23 sing N N 150 VAL OXT HXT sing N N 151 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 2NDK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O Q # loop_