data_2NG1 # _entry.id 2NG1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2NG1 pdb_00002ng1 10.2210/pdb2ng1/pdb WWPDB D_1000178403 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2NG1 _pdbx_database_status.recvd_initial_deposition_date 1998-09-11 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Freymann, D.M.' 1 'Stroud, R.M.' 2 'Walter, P.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Functional changes in the structure of the SRP GTPase on binding GDP and Mg2+GDP.' Nat.Struct.Biol. 6 793 801 1999 NSBIEW US 1072-8368 2024 ? 10426959 10.1038/11572 1 'Crystal Structure of the Signal Sequence Binding Subunit of the Signal Recognition Particle' 'Cell(Cambridge,Mass.)' 94 181 ? 1998 CELLB5 US 0092-8674 0998 ? ? ? 2 'Structure of the Conserved Gtpase Domain of the Signal Recognition Particle' Nature 385 361 ? 1997 NATUAS UK 0028-0836 0006 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Freymann, D.M.' 1 ? primary 'Keenan, R.J.' 2 ? primary 'Stroud, R.M.' 3 ? primary 'Walter, P.' 4 ? 1 'Keenan, R.J.' 5 ? 1 'Freymann, D.M.' 6 ? 1 'Walter, P.' 7 ? 1 'Stroud, R.M.' 8 ? 2 'Freymann, D.M.' 9 ? 2 'Keenan, R.J.' 10 ? 2 'Stroud, R.M.' 11 ? 2 'Walter, P.' 12 ? # _cell.entry_id 2NG1 _cell.length_a 110.425 _cell.length_b 54.214 _cell.length_c 58.465 _cell.angle_alpha 90.00 _cell.angle_beta 119.62 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NG1 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SIGNAL SEQUENCE RECOGNITION PROTEIN FFH' 32199.199 1 ? YES 'NG GTPASE FRAGMENT' ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 3 non-polymer syn '1,4-DIETHYLENE DIOXIDE' 88.105 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 5 water nat water 18.015 72 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name FFH # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEA LKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTG LVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGM ; _entity_poly.pdbx_seq_one_letter_code_can ;FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEA LKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTG LVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 GLN n 1 3 GLN n 1 4 LEU n 1 5 SER n 1 6 ALA n 1 7 ARG n 1 8 LEU n 1 9 GLN n 1 10 GLU n 1 11 ALA n 1 12 ILE n 1 13 GLY n 1 14 ARG n 1 15 LEU n 1 16 ARG n 1 17 GLY n 1 18 ARG n 1 19 GLY n 1 20 ARG n 1 21 ILE n 1 22 THR n 1 23 GLU n 1 24 GLU n 1 25 ASP n 1 26 LEU n 1 27 LYS n 1 28 ALA n 1 29 THR n 1 30 LEU n 1 31 ARG n 1 32 GLU n 1 33 ILE n 1 34 ARG n 1 35 ARG n 1 36 ALA n 1 37 LEU n 1 38 MET n 1 39 ASP n 1 40 ALA n 1 41 ASP n 1 42 VAL n 1 43 ASN n 1 44 LEU n 1 45 GLU n 1 46 VAL n 1 47 THR n 1 48 ARG n 1 49 ASP n 1 50 PHE n 1 51 VAL n 1 52 GLU n 1 53 ARG n 1 54 VAL n 1 55 ARG n 1 56 GLU n 1 57 GLU n 1 58 ALA n 1 59 LEU n 1 60 GLY n 1 61 LYS n 1 62 GLN n 1 63 VAL n 1 64 LEU n 1 65 GLU n 1 66 SER n 1 67 LEU n 1 68 THR n 1 69 PRO n 1 70 ALA n 1 71 GLU n 1 72 VAL n 1 73 ILE n 1 74 LEU n 1 75 ALA n 1 76 THR n 1 77 VAL n 1 78 TYR n 1 79 GLU n 1 80 ALA n 1 81 LEU n 1 82 LYS n 1 83 GLU n 1 84 ALA n 1 85 LEU n 1 86 GLY n 1 87 GLY n 1 88 GLU n 1 89 ALA n 1 90 ARG n 1 91 LEU n 1 92 PRO n 1 93 VAL n 1 94 LEU n 1 95 LYS n 1 96 ASP n 1 97 ARG n 1 98 ASN n 1 99 LEU n 1 100 TRP n 1 101 PHE n 1 102 LEU n 1 103 VAL n 1 104 GLY n 1 105 LEU n 1 106 GLN n 1 107 GLY n 1 108 SER n 1 109 GLY n 1 110 LYS n 1 111 THR n 1 112 THR n 1 113 THR n 1 114 ALA n 1 115 ALA n 1 116 LYS n 1 117 LEU n 1 118 ALA n 1 119 LEU n 1 120 TYR n 1 121 TYR n 1 122 LYS n 1 123 GLY n 1 124 LYS n 1 125 GLY n 1 126 ARG n 1 127 ARG n 1 128 PRO n 1 129 LEU n 1 130 LEU n 1 131 VAL n 1 132 ALA n 1 133 ALA n 1 134 ASP n 1 135 THR n 1 136 GLN n 1 137 ARG n 1 138 PRO n 1 139 ALA n 1 140 ALA n 1 141 ARG n 1 142 GLU n 1 143 GLN n 1 144 LEU n 1 145 ARG n 1 146 LEU n 1 147 LEU n 1 148 GLY n 1 149 GLU n 1 150 LYS n 1 151 VAL n 1 152 GLY n 1 153 VAL n 1 154 PRO n 1 155 VAL n 1 156 LEU n 1 157 GLU n 1 158 VAL n 1 159 MET n 1 160 ASP n 1 161 GLY n 1 162 GLU n 1 163 SER n 1 164 PRO n 1 165 GLU n 1 166 SER n 1 167 ILE n 1 168 ARG n 1 169 ARG n 1 170 ARG n 1 171 VAL n 1 172 GLU n 1 173 GLU n 1 174 LYS n 1 175 ALA n 1 176 ARG n 1 177 LEU n 1 178 GLU n 1 179 ALA n 1 180 ARG n 1 181 ASP n 1 182 LEU n 1 183 ILE n 1 184 LEU n 1 185 VAL n 1 186 ASP n 1 187 THR n 1 188 ALA n 1 189 GLY n 1 190 ARG n 1 191 LEU n 1 192 GLN n 1 193 ILE n 1 194 ASP n 1 195 GLU n 1 196 PRO n 1 197 LEU n 1 198 MET n 1 199 GLY n 1 200 GLU n 1 201 LEU n 1 202 ALA n 1 203 ARG n 1 204 LEU n 1 205 LYS n 1 206 GLU n 1 207 VAL n 1 208 LEU n 1 209 GLY n 1 210 PRO n 1 211 ASP n 1 212 GLU n 1 213 VAL n 1 214 LEU n 1 215 LEU n 1 216 VAL n 1 217 LEU n 1 218 ASP n 1 219 ALA n 1 220 MET n 1 221 THR n 1 222 GLY n 1 223 GLN n 1 224 GLU n 1 225 ALA n 1 226 LEU n 1 227 SER n 1 228 VAL n 1 229 ALA n 1 230 ARG n 1 231 ALA n 1 232 PHE n 1 233 ASP n 1 234 GLU n 1 235 LYS n 1 236 VAL n 1 237 GLY n 1 238 VAL n 1 239 THR n 1 240 GLY n 1 241 LEU n 1 242 VAL n 1 243 LEU n 1 244 THR n 1 245 LYS n 1 246 LEU n 1 247 ASP n 1 248 GLY n 1 249 ASP n 1 250 ALA n 1 251 ARG n 1 252 GLY n 1 253 GLY n 1 254 ALA n 1 255 ALA n 1 256 LEU n 1 257 SER n 1 258 ALA n 1 259 ARG n 1 260 HIS n 1 261 VAL n 1 262 THR n 1 263 GLY n 1 264 LYS n 1 265 PRO n 1 266 ILE n 1 267 TYR n 1 268 PHE n 1 269 ALA n 1 270 GLY n 1 271 VAL n 1 272 SER n 1 273 GLU n 1 274 LYS n 1 275 PRO n 1 276 GLU n 1 277 GLY n 1 278 LEU n 1 279 GLU n 1 280 PRO n 1 281 PHE n 1 282 TYR n 1 283 PRO n 1 284 GLU n 1 285 ARG n 1 286 LEU n 1 287 ALA n 1 288 GLY n 1 289 ARG n 1 290 ILE n 1 291 LEU n 1 292 GLY n 1 293 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene FFH _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus aquaticus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 271 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) PLYSE' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET3C _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SRP54_THEAQ _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession O07347 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEA LKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTG LVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKELS LEDFLKQMQNLKRLGPFSEILGLLPGVPQGLKVDEKAIKRLEAIVLSMTPEERKDPRILNGSRRKRIAKGSGTSVQEVNR FIKAFEEMKALMKSLEKKKGRGLMGMFRR ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2NG1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 293 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O07347 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 293 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 294 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2NG1 _struct_ref_seq_dif.mon_id THR _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 47 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O07347 _struct_ref_seq_dif.db_mon_id ALA _struct_ref_seq_dif.pdbx_seq_db_seq_num 47 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 48 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DIO non-polymer . '1,4-DIETHYLENE DIOXIDE' ? 'C4 H8 O2' 88.105 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2NG1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_percent_sol 47.91 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS' _diffrn_detector.pdbx_collection_date 1996-12-12 _diffrn_detector.details 'YALE MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2NG1 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.020 _reflns.number_obs 18481 _reflns.number_all ? _reflns.percent_possible_obs 93.0 _reflns.pdbx_Rmerge_I_obs 0.0720000 _reflns.pdbx_Rsym_value 0.0720000 _reflns.pdbx_netI_over_sigmaI 12.9000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.200 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.02 _reflns_shell.d_res_low 2.09 _reflns_shell.percent_possible_all 93.0 _reflns_shell.Rmerge_I_obs 0.2840000 _reflns_shell.pdbx_Rsym_value 0.2840000 _reflns_shell.meanI_over_sigI_obs 3.600 _reflns_shell.pdbx_redundancy 2.90 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2NG1 _refine.ls_number_reflns_obs 18442 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.000 _refine.pdbx_data_cutoff_high_absF 10000000.000 _refine.pdbx_data_cutoff_low_absF 0.1000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.02 _refine.ls_percent_reflns_obs 85.1 _refine.ls_R_factor_obs 0.2000000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2000000 _refine.ls_R_factor_R_free 0.2900000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.000 _refine.ls_number_reflns_R_free 1446 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 41.00 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;A BULK SOLVENT CORRECTION WAS APPLIED. THE DATA QUALITY AND COMPLETENESS BEYOND 2.3 A WERE AFFECTED BY A STRONG ICE RING. THE ELECTRON DENSITY MAPS WERE SOMEWHAT NOISIER THAN WOULD BE EXPECTED FOR A STRUCTURE AT THIS RESOLUTION. SEVERAL MAIN CHAIN ATOMS OF THE FOLLOWING SURFACE EXPOSED STRETCHES ARE POORLY DEFINED IN THE ELECTRON DENSITY MAP: 1) PHE 2 - GLN 3, 2) GLY 18 - GLU 25, 3) GLN 63 - GLU 66, AND 4) ALA 251 - ARG 252. THEY ARE CHARACTERIZED BY HIGH TEMPERATURE FACTORS AND ARE PROBABLY MOBILE. ; _refine.pdbx_starting_model 'PDB ENTRY 1FFH' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2261 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 2375 _refine_hist.d_res_high 2.02 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.42 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.15 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.73 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 12 _refine_ls_shell.d_res_high 2.02 _refine_ls_shell.d_res_low 2.08 _refine_ls_shell.number_reflns_R_work 1040 _refine_ls_shell.R_factor_R_work 0.3100000 _refine_ls_shell.percent_reflns_obs 68.00 _refine_ls_shell.R_factor_R_free 0.3500000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 7.50 _refine_ls_shell.number_reflns_R_free 84 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PROTEIN_REP.PARAM _pdbx_xplor_file.topol_file TOPHCSDX.PRO _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2NG1 _struct.title 'N AND GTPASE DOMAINS OF THE SIGNAL SEQUENCE RECOGNITION PROTEIN FFH FROM THERMUS AQUATICUS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NG1 _struct_keywords.pdbx_keywords 'SIGNAL RECOGNITION' _struct_keywords.text 'FFH, SRP, GTPASE, SIGNAL RECOGNITION PARTICLE, GDP, SIGNAL RECOGNITION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 2 ? GLY A 13 ? GLN A 3 GLY A 14 1 ? 12 HELX_P HELX_P2 2 GLU A 23 ? ALA A 40 ? GLU A 24 ALA A 41 1 ? 18 HELX_P HELX_P3 3 LEU A 44 ? LYS A 61 ? LEU A 45 LYS A 62 1 ? 18 HELX_P HELX_P4 4 PRO A 69 ? LEU A 85 ? PRO A 70 LEU A 86 1 ? 17 HELX_P HELX_P5 5 LYS A 110 ? LYS A 124 ? LYS A 111 LYS A 125 1 ? 15 HELX_P HELX_P6 6 PRO A 138 ? VAL A 151 ? PRO A 139 VAL A 152 1 ? 14 HELX_P HELX_P7 7 PRO A 164 ? GLU A 178 ? PRO A 165 GLU A 179 1 ? 15 HELX_P HELX_P8 8 GLU A 195 ? LEU A 208 ? GLU A 196 LEU A 209 1 ? 14 HELX_P HELX_P9 9 ALA A 219 ? LYS A 235 ? ALA A 220 LYS A 236 5 ? 17 HELX_P HELX_P10 10 GLY A 253 ? VAL A 261 ? GLY A 254 VAL A 262 1 ? 9 HELX_P HELX_P11 11 PRO A 283 ? ILE A 290 ? PRO A 284 ILE A 291 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 278 ? PRO A 280 ? LEU A 279 PRO A 281 A 2 PRO A 265 ? GLY A 270 ? PRO A 266 GLY A 271 A 3 GLY A 240 ? THR A 244 ? GLY A 241 THR A 245 A 4 GLU A 212 ? ASP A 218 ? GLU A 213 ASP A 219 A 5 ASN A 98 ? GLY A 104 ? ASN A 99 GLY A 105 A 6 LEU A 182 ? ASP A 186 ? LEU A 183 ASP A 187 A 7 PRO A 128 ? ALA A 132 ? PRO A 129 ALA A 133 A 8 PRO A 154 ? GLU A 157 ? PRO A 155 GLU A 158 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 279 ? O GLU A 280 N ALA A 269 ? N ALA A 270 A 2 3 O PRO A 265 ? O PRO A 266 N LEU A 241 ? N LEU A 242 A 3 4 O GLY A 240 ? O GLY A 241 N LEU A 215 ? N LEU A 216 A 4 5 O GLU A 212 ? O GLU A 213 N PHE A 101 ? N PHE A 102 A 5 6 O ASN A 98 ? O ASN A 99 N ILE A 183 ? N ILE A 184 A 6 7 O LEU A 182 ? O LEU A 183 N LEU A 129 ? N LEU A 130 A 7 8 O LEU A 130 ? O LEU A 131 N PRO A 154 ? N PRO A 155 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GDP 900 ? 18 'BINDING SITE FOR RESIDUE GDP A 900' AC2 Software A DIO 800 ? 5 'BINDING SITE FOR RESIDUE DIO A 800' AC3 Software A EDO 971 ? 8 'BINDING SITE FOR RESIDUE EDO A 971' AC4 Software A EDO 973 ? 1 'BINDING SITE FOR RESIDUE EDO A 973' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 GLN A 2 ? GLN A 3 . ? 2_556 ? 2 AC1 18 GLY A 107 ? GLY A 108 . ? 1_555 ? 3 AC1 18 SER A 108 ? SER A 109 . ? 1_555 ? 4 AC1 18 GLY A 109 ? GLY A 110 . ? 1_555 ? 5 AC1 18 LYS A 110 ? LYS A 111 . ? 1_555 ? 6 AC1 18 THR A 111 ? THR A 112 . ? 1_555 ? 7 AC1 18 THR A 112 ? THR A 113 . ? 1_555 ? 8 AC1 18 GLN A 143 ? GLN A 144 . ? 1_555 ? 9 AC1 18 LYS A 245 ? LYS A 246 . ? 1_555 ? 10 AC1 18 ASP A 247 ? ASP A 248 . ? 2_556 ? 11 AC1 18 ASP A 247 ? ASP A 248 . ? 1_555 ? 12 AC1 18 GLY A 270 ? GLY A 271 . ? 1_555 ? 13 AC1 18 VAL A 271 ? VAL A 272 . ? 1_555 ? 14 AC1 18 SER A 272 ? SER A 273 . ? 1_555 ? 15 AC1 18 GLU A 273 ? GLU A 274 . ? 1_555 ? 16 AC1 18 HOH F . ? HOH A 997 . ? 1_555 ? 17 AC1 18 HOH F . ? HOH A 998 . ? 1_555 ? 18 AC1 18 HOH F . ? HOH A 1007 . ? 1_555 ? 19 AC2 5 VAL A 271 ? VAL A 272 . ? 1_555 ? 20 AC2 5 GLU A 279 ? GLU A 280 . ? 1_555 ? 21 AC2 5 PRO A 280 ? PRO A 281 . ? 1_555 ? 22 AC2 5 TYR A 282 ? TYR A 283 . ? 1_555 ? 23 AC2 5 ARG A 289 ? ARG A 290 . ? 1_555 ? 24 AC3 8 GLY A 104 ? GLY A 105 . ? 1_555 ? 25 AC3 8 LEU A 105 ? LEU A 106 . ? 1_555 ? 26 AC3 8 ALA A 188 ? ALA A 189 . ? 1_555 ? 27 AC3 8 GLY A 189 ? GLY A 190 . ? 1_555 ? 28 AC3 8 ARG A 190 ? ARG A 191 . ? 1_555 ? 29 AC3 8 ASP A 194 ? ASP A 195 . ? 1_555 ? 30 AC3 8 PHE A 232 ? PHE A 233 . ? 1_555 ? 31 AC3 8 HOH F . ? HOH A 1008 . ? 1_555 ? 32 AC4 1 VAL A 151 ? VAL A 152 . ? 1_555 ? # _database_PDB_matrix.entry_id 2NG1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2NG1 _atom_sites.fract_transf_matrix[1][1] 0.009056 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005149 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018445 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019675 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 2 2 PHE PHE A . n A 1 2 GLN 2 3 3 GLN GLN A . n A 1 3 GLN 3 4 4 GLN GLN A . n A 1 4 LEU 4 5 5 LEU LEU A . n A 1 5 SER 5 6 6 SER SER A . n A 1 6 ALA 6 7 7 ALA ALA A . n A 1 7 ARG 7 8 8 ARG ARG A . n A 1 8 LEU 8 9 9 LEU LEU A . n A 1 9 GLN 9 10 10 GLN GLN A . n A 1 10 GLU 10 11 11 GLU GLU A . n A 1 11 ALA 11 12 12 ALA ALA A . n A 1 12 ILE 12 13 13 ILE ILE A . n A 1 13 GLY 13 14 14 GLY GLY A . n A 1 14 ARG 14 15 15 ARG ARG A . n A 1 15 LEU 15 16 16 LEU LEU A . n A 1 16 ARG 16 17 17 ARG ARG A . n A 1 17 GLY 17 18 18 GLY GLY A . n A 1 18 ARG 18 19 19 ARG ARG A . n A 1 19 GLY 19 20 20 GLY GLY A . n A 1 20 ARG 20 21 21 ARG ARG A . n A 1 21 ILE 21 22 22 ILE ILE A . n A 1 22 THR 22 23 23 THR THR A . n A 1 23 GLU 23 24 24 GLU GLU A . n A 1 24 GLU 24 25 25 GLU GLU A . n A 1 25 ASP 25 26 26 ASP ASP A . n A 1 26 LEU 26 27 27 LEU LEU A . n A 1 27 LYS 27 28 28 LYS LYS A . n A 1 28 ALA 28 29 29 ALA ALA A . n A 1 29 THR 29 30 30 THR THR A . n A 1 30 LEU 30 31 31 LEU LEU A . n A 1 31 ARG 31 32 32 ARG ARG A . n A 1 32 GLU 32 33 33 GLU GLU A . n A 1 33 ILE 33 34 34 ILE ILE A . n A 1 34 ARG 34 35 35 ARG ARG A . n A 1 35 ARG 35 36 36 ARG ARG A . n A 1 36 ALA 36 37 37 ALA ALA A . n A 1 37 LEU 37 38 38 LEU LEU A . n A 1 38 MET 38 39 39 MET MET A . n A 1 39 ASP 39 40 40 ASP ASP A . n A 1 40 ALA 40 41 41 ALA ALA A . n A 1 41 ASP 41 42 42 ASP ASP A . n A 1 42 VAL 42 43 43 VAL VAL A . n A 1 43 ASN 43 44 44 ASN ASN A . n A 1 44 LEU 44 45 45 LEU LEU A . n A 1 45 GLU 45 46 46 GLU GLU A . n A 1 46 VAL 46 47 47 VAL VAL A . n A 1 47 THR 47 48 48 THR THR A . n A 1 48 ARG 48 49 49 ARG ARG A . n A 1 49 ASP 49 50 50 ASP ASP A . n A 1 50 PHE 50 51 51 PHE PHE A . n A 1 51 VAL 51 52 52 VAL VAL A . n A 1 52 GLU 52 53 53 GLU GLU A . n A 1 53 ARG 53 54 54 ARG ARG A . n A 1 54 VAL 54 55 55 VAL VAL A . n A 1 55 ARG 55 56 56 ARG ARG A . n A 1 56 GLU 56 57 57 GLU GLU A . n A 1 57 GLU 57 58 58 GLU GLU A . n A 1 58 ALA 58 59 59 ALA ALA A . n A 1 59 LEU 59 60 60 LEU LEU A . n A 1 60 GLY 60 61 61 GLY GLY A . n A 1 61 LYS 61 62 62 LYS LYS A . n A 1 62 GLN 62 63 63 GLN GLN A . n A 1 63 VAL 63 64 64 VAL VAL A . n A 1 64 LEU 64 65 65 LEU LEU A . n A 1 65 GLU 65 66 66 GLU GLU A . n A 1 66 SER 66 67 67 SER SER A . n A 1 67 LEU 67 68 68 LEU LEU A . n A 1 68 THR 68 69 69 THR THR A . n A 1 69 PRO 69 70 70 PRO PRO A . n A 1 70 ALA 70 71 71 ALA ALA A . n A 1 71 GLU 71 72 72 GLU GLU A . n A 1 72 VAL 72 73 73 VAL VAL A . n A 1 73 ILE 73 74 74 ILE ILE A . n A 1 74 LEU 74 75 75 LEU LEU A . n A 1 75 ALA 75 76 76 ALA ALA A . n A 1 76 THR 76 77 77 THR THR A . n A 1 77 VAL 77 78 78 VAL VAL A . n A 1 78 TYR 78 79 79 TYR TYR A . n A 1 79 GLU 79 80 80 GLU GLU A . n A 1 80 ALA 80 81 81 ALA ALA A . n A 1 81 LEU 81 82 82 LEU LEU A . n A 1 82 LYS 82 83 83 LYS LYS A . n A 1 83 GLU 83 84 84 GLU GLU A . n A 1 84 ALA 84 85 85 ALA ALA A . n A 1 85 LEU 85 86 86 LEU LEU A . n A 1 86 GLY 86 87 87 GLY GLY A . n A 1 87 GLY 87 88 88 GLY GLY A . n A 1 88 GLU 88 89 89 GLU GLU A . n A 1 89 ALA 89 90 90 ALA ALA A . n A 1 90 ARG 90 91 91 ARG ARG A . n A 1 91 LEU 91 92 92 LEU LEU A . n A 1 92 PRO 92 93 93 PRO PRO A . n A 1 93 VAL 93 94 94 VAL VAL A . n A 1 94 LEU 94 95 95 LEU LEU A . n A 1 95 LYS 95 96 96 LYS LYS A . n A 1 96 ASP 96 97 97 ASP ASP A . n A 1 97 ARG 97 98 98 ARG ARG A . n A 1 98 ASN 98 99 99 ASN ASN A . n A 1 99 LEU 99 100 100 LEU LEU A . n A 1 100 TRP 100 101 101 TRP TRP A . n A 1 101 PHE 101 102 102 PHE PHE A . n A 1 102 LEU 102 103 103 LEU LEU A . n A 1 103 VAL 103 104 104 VAL VAL A . n A 1 104 GLY 104 105 105 GLY GLY A . n A 1 105 LEU 105 106 106 LEU LEU A . n A 1 106 GLN 106 107 107 GLN GLN A . n A 1 107 GLY 107 108 108 GLY GLY A . n A 1 108 SER 108 109 109 SER SER A . n A 1 109 GLY 109 110 110 GLY GLY A . n A 1 110 LYS 110 111 111 LYS LYS A . n A 1 111 THR 111 112 112 THR THR A . n A 1 112 THR 112 113 113 THR THR A . n A 1 113 THR 113 114 114 THR THR A . n A 1 114 ALA 114 115 115 ALA ALA A . n A 1 115 ALA 115 116 116 ALA ALA A . n A 1 116 LYS 116 117 117 LYS LYS A . n A 1 117 LEU 117 118 118 LEU LEU A . n A 1 118 ALA 118 119 119 ALA ALA A . n A 1 119 LEU 119 120 120 LEU LEU A . n A 1 120 TYR 120 121 121 TYR TYR A . n A 1 121 TYR 121 122 122 TYR TYR A . n A 1 122 LYS 122 123 123 LYS LYS A . n A 1 123 GLY 123 124 124 GLY GLY A . n A 1 124 LYS 124 125 125 LYS LYS A . n A 1 125 GLY 125 126 126 GLY GLY A . n A 1 126 ARG 126 127 127 ARG ARG A . n A 1 127 ARG 127 128 128 ARG ARG A . n A 1 128 PRO 128 129 129 PRO PRO A . n A 1 129 LEU 129 130 130 LEU LEU A . n A 1 130 LEU 130 131 131 LEU LEU A . n A 1 131 VAL 131 132 132 VAL VAL A . n A 1 132 ALA 132 133 133 ALA ALA A . n A 1 133 ALA 133 134 134 ALA ALA A . n A 1 134 ASP 134 135 135 ASP ASP A . n A 1 135 THR 135 136 136 THR THR A . n A 1 136 GLN 136 137 137 GLN GLN A . n A 1 137 ARG 137 138 138 ARG ARG A . n A 1 138 PRO 138 139 139 PRO PRO A . n A 1 139 ALA 139 140 140 ALA ALA A . n A 1 140 ALA 140 141 141 ALA ALA A . n A 1 141 ARG 141 142 142 ARG ARG A . n A 1 142 GLU 142 143 143 GLU GLU A . n A 1 143 GLN 143 144 144 GLN GLN A . n A 1 144 LEU 144 145 145 LEU LEU A . n A 1 145 ARG 145 146 146 ARG ARG A . n A 1 146 LEU 146 147 147 LEU LEU A . n A 1 147 LEU 147 148 148 LEU LEU A . n A 1 148 GLY 148 149 149 GLY GLY A . n A 1 149 GLU 149 150 150 GLU GLU A . n A 1 150 LYS 150 151 151 LYS LYS A . n A 1 151 VAL 151 152 152 VAL VAL A . n A 1 152 GLY 152 153 153 GLY GLY A . n A 1 153 VAL 153 154 154 VAL VAL A . n A 1 154 PRO 154 155 155 PRO PRO A . n A 1 155 VAL 155 156 156 VAL VAL A . n A 1 156 LEU 156 157 157 LEU LEU A . n A 1 157 GLU 157 158 158 GLU GLU A . n A 1 158 VAL 158 159 159 VAL VAL A . n A 1 159 MET 159 160 160 MET MET A . n A 1 160 ASP 160 161 161 ASP ASP A . n A 1 161 GLY 161 162 162 GLY GLY A . n A 1 162 GLU 162 163 163 GLU GLU A . n A 1 163 SER 163 164 164 SER SER A . n A 1 164 PRO 164 165 165 PRO PRO A . n A 1 165 GLU 165 166 166 GLU GLU A . n A 1 166 SER 166 167 167 SER SER A . n A 1 167 ILE 167 168 168 ILE ILE A . n A 1 168 ARG 168 169 169 ARG ARG A . n A 1 169 ARG 169 170 170 ARG ARG A . n A 1 170 ARG 170 171 171 ARG ARG A . n A 1 171 VAL 171 172 172 VAL VAL A . n A 1 172 GLU 172 173 173 GLU GLU A . n A 1 173 GLU 173 174 174 GLU GLU A . n A 1 174 LYS 174 175 175 LYS LYS A . n A 1 175 ALA 175 176 176 ALA ALA A . n A 1 176 ARG 176 177 177 ARG ARG A . n A 1 177 LEU 177 178 178 LEU LEU A . n A 1 178 GLU 178 179 179 GLU GLU A . n A 1 179 ALA 179 180 180 ALA ALA A . n A 1 180 ARG 180 181 181 ARG ARG A . n A 1 181 ASP 181 182 182 ASP ASP A . n A 1 182 LEU 182 183 183 LEU LEU A . n A 1 183 ILE 183 184 184 ILE ILE A . n A 1 184 LEU 184 185 185 LEU LEU A . n A 1 185 VAL 185 186 186 VAL VAL A . n A 1 186 ASP 186 187 187 ASP ASP A . n A 1 187 THR 187 188 188 THR THR A . n A 1 188 ALA 188 189 189 ALA ALA A . n A 1 189 GLY 189 190 190 GLY GLY A . n A 1 190 ARG 190 191 191 ARG ARG A . n A 1 191 LEU 191 192 192 LEU LEU A . n A 1 192 GLN 192 193 193 GLN GLN A . n A 1 193 ILE 193 194 194 ILE ILE A . n A 1 194 ASP 194 195 195 ASP ASP A . n A 1 195 GLU 195 196 196 GLU GLU A . n A 1 196 PRO 196 197 197 PRO PRO A . n A 1 197 LEU 197 198 198 LEU LEU A . n A 1 198 MET 198 199 199 MET MET A . n A 1 199 GLY 199 200 200 GLY GLY A . n A 1 200 GLU 200 201 201 GLU GLU A . n A 1 201 LEU 201 202 202 LEU LEU A . n A 1 202 ALA 202 203 203 ALA ALA A . n A 1 203 ARG 203 204 204 ARG ARG A . n A 1 204 LEU 204 205 205 LEU LEU A . n A 1 205 LYS 205 206 206 LYS LYS A . n A 1 206 GLU 206 207 207 GLU GLU A . n A 1 207 VAL 207 208 208 VAL VAL A . n A 1 208 LEU 208 209 209 LEU LEU A . n A 1 209 GLY 209 210 210 GLY GLY A . n A 1 210 PRO 210 211 211 PRO PRO A . n A 1 211 ASP 211 212 212 ASP ASP A . n A 1 212 GLU 212 213 213 GLU GLU A . n A 1 213 VAL 213 214 214 VAL VAL A . n A 1 214 LEU 214 215 215 LEU LEU A . n A 1 215 LEU 215 216 216 LEU LEU A . n A 1 216 VAL 216 217 217 VAL VAL A . n A 1 217 LEU 217 218 218 LEU LEU A . n A 1 218 ASP 218 219 219 ASP ASP A . n A 1 219 ALA 219 220 220 ALA ALA A . n A 1 220 MET 220 221 221 MET MET A . n A 1 221 THR 221 222 222 THR THR A . n A 1 222 GLY 222 223 223 GLY GLY A . n A 1 223 GLN 223 224 224 GLN GLN A . n A 1 224 GLU 224 225 225 GLU GLU A . n A 1 225 ALA 225 226 226 ALA ALA A . n A 1 226 LEU 226 227 227 LEU LEU A . n A 1 227 SER 227 228 228 SER SER A . n A 1 228 VAL 228 229 229 VAL VAL A . n A 1 229 ALA 229 230 230 ALA ALA A . n A 1 230 ARG 230 231 231 ARG ARG A . n A 1 231 ALA 231 232 232 ALA ALA A . n A 1 232 PHE 232 233 233 PHE PHE A . n A 1 233 ASP 233 234 234 ASP ASP A . n A 1 234 GLU 234 235 235 GLU GLU A . n A 1 235 LYS 235 236 236 LYS LYS A . n A 1 236 VAL 236 237 237 VAL VAL A . n A 1 237 GLY 237 238 238 GLY GLY A . n A 1 238 VAL 238 239 239 VAL VAL A . n A 1 239 THR 239 240 240 THR THR A . n A 1 240 GLY 240 241 241 GLY GLY A . n A 1 241 LEU 241 242 242 LEU LEU A . n A 1 242 VAL 242 243 243 VAL VAL A . n A 1 243 LEU 243 244 244 LEU LEU A . n A 1 244 THR 244 245 245 THR THR A . n A 1 245 LYS 245 246 246 LYS LYS A . n A 1 246 LEU 246 247 247 LEU LEU A . n A 1 247 ASP 247 248 248 ASP ASP A . n A 1 248 GLY 248 249 249 GLY GLY A . n A 1 249 ASP 249 250 250 ASP ASP A . n A 1 250 ALA 250 251 251 ALA ALA A . n A 1 251 ARG 251 252 252 ARG ARG A . n A 1 252 GLY 252 253 253 GLY GLY A . n A 1 253 GLY 253 254 254 GLY GLY A . n A 1 254 ALA 254 255 255 ALA ALA A . n A 1 255 ALA 255 256 256 ALA ALA A . n A 1 256 LEU 256 257 257 LEU LEU A . n A 1 257 SER 257 258 258 SER SER A . n A 1 258 ALA 258 259 259 ALA ALA A . n A 1 259 ARG 259 260 260 ARG ARG A . n A 1 260 HIS 260 261 261 HIS HIS A . n A 1 261 VAL 261 262 262 VAL VAL A . n A 1 262 THR 262 263 263 THR THR A . n A 1 263 GLY 263 264 264 GLY GLY A . n A 1 264 LYS 264 265 265 LYS LYS A . n A 1 265 PRO 265 266 266 PRO PRO A . n A 1 266 ILE 266 267 267 ILE ILE A . n A 1 267 TYR 267 268 268 TYR TYR A . n A 1 268 PHE 268 269 269 PHE PHE A . n A 1 269 ALA 269 270 270 ALA ALA A . n A 1 270 GLY 270 271 271 GLY GLY A . n A 1 271 VAL 271 272 272 VAL VAL A . n A 1 272 SER 272 273 273 SER SER A . n A 1 273 GLU 273 274 274 GLU GLU A . n A 1 274 LYS 274 275 275 LYS LYS A . n A 1 275 PRO 275 276 276 PRO PRO A . n A 1 276 GLU 276 277 277 GLU GLU A . n A 1 277 GLY 277 278 278 GLY GLY A . n A 1 278 LEU 278 279 279 LEU LEU A . n A 1 279 GLU 279 280 280 GLU GLU A . n A 1 280 PRO 280 281 281 PRO PRO A . n A 1 281 PHE 281 282 282 PHE PHE A . n A 1 282 TYR 282 283 283 TYR TYR A . n A 1 283 PRO 283 284 284 PRO PRO A . n A 1 284 GLU 284 285 285 GLU GLU A . n A 1 285 ARG 285 286 286 ARG ARG A . n A 1 286 LEU 286 287 287 LEU LEU A . n A 1 287 ALA 287 288 288 ALA ALA A . n A 1 288 GLY 288 289 289 GLY GLY A . n A 1 289 ARG 289 290 290 ARG ARG A . n A 1 290 ILE 290 291 291 ILE ILE A . n A 1 291 LEU 291 292 292 LEU LEU A . n A 1 292 GLY 292 293 293 GLY GLY A . n A 1 293 MET 293 294 294 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP 1 900 900 GDP GDP A . C 3 DIO 1 800 800 DIO DOX A . D 4 EDO 1 971 971 EDO EDO A . E 4 EDO 1 973 973 EDO EDO A . F 5 HOH 1 974 1 HOH HOH A . F 5 HOH 2 975 2 HOH HOH A . F 5 HOH 3 976 3 HOH HOH A . F 5 HOH 4 977 4 HOH HOH A . F 5 HOH 5 978 5 HOH HOH A . F 5 HOH 6 979 7 HOH HOH A . F 5 HOH 7 980 8 HOH HOH A . F 5 HOH 8 981 9 HOH HOH A . F 5 HOH 9 982 10 HOH HOH A . F 5 HOH 10 983 11 HOH HOH A . F 5 HOH 11 984 12 HOH HOH A . F 5 HOH 12 985 13 HOH HOH A . F 5 HOH 13 986 15 HOH HOH A . F 5 HOH 14 987 17 HOH HOH A . F 5 HOH 15 988 18 HOH HOH A . F 5 HOH 16 989 19 HOH HOH A . F 5 HOH 17 990 20 HOH HOH A . F 5 HOH 18 991 22 HOH HOH A . F 5 HOH 19 992 23 HOH HOH A . F 5 HOH 20 993 24 HOH HOH A . F 5 HOH 21 994 25 HOH HOH A . F 5 HOH 22 995 26 HOH HOH A . F 5 HOH 23 996 27 HOH HOH A . F 5 HOH 24 997 28 HOH HOH A . F 5 HOH 25 998 29 HOH HOH A . F 5 HOH 26 999 30 HOH HOH A . F 5 HOH 27 1000 31 HOH HOH A . F 5 HOH 28 1001 33 HOH HOH A . F 5 HOH 29 1002 37 HOH HOH A . F 5 HOH 30 1003 38 HOH HOH A . F 5 HOH 31 1004 39 HOH HOH A . F 5 HOH 32 1005 40 HOH HOH A . F 5 HOH 33 1006 41 HOH HOH A . F 5 HOH 34 1007 42 HOH HOH A . F 5 HOH 35 1008 43 HOH HOH A . F 5 HOH 36 1009 44 HOH HOH A . F 5 HOH 37 1010 45 HOH HOH A . F 5 HOH 38 1011 46 HOH HOH A . F 5 HOH 39 1012 47 HOH HOH A . F 5 HOH 40 1013 48 HOH HOH A . F 5 HOH 41 1014 49 HOH HOH A . F 5 HOH 42 1015 51 HOH HOH A . F 5 HOH 43 1016 52 HOH HOH A . F 5 HOH 44 1017 53 HOH HOH A . F 5 HOH 45 1018 54 HOH HOH A . F 5 HOH 46 1019 55 HOH HOH A . F 5 HOH 47 1020 56 HOH HOH A . F 5 HOH 48 1021 57 HOH HOH A . F 5 HOH 49 1022 58 HOH HOH A . F 5 HOH 50 1023 59 HOH HOH A . F 5 HOH 51 1024 60 HOH HOH A . F 5 HOH 52 1025 63 HOH HOH A . F 5 HOH 53 1026 64 HOH HOH A . F 5 HOH 54 1027 65 HOH HOH A . F 5 HOH 55 1028 66 HOH HOH A . F 5 HOH 56 1029 67 HOH HOH A . F 5 HOH 57 1030 68 HOH HOH A . F 5 HOH 58 1031 69 HOH HOH A . F 5 HOH 59 1032 70 HOH HOH A . F 5 HOH 60 1033 71 HOH HOH A . F 5 HOH 61 1034 72 HOH HOH A . F 5 HOH 62 1035 73 HOH HOH A . F 5 HOH 63 1036 74 HOH HOH A . F 5 HOH 64 1037 75 HOH HOH A . F 5 HOH 65 1038 76 HOH HOH A . F 5 HOH 66 1039 77 HOH HOH A . F 5 HOH 67 1040 78 HOH HOH A . F 5 HOH 68 1041 79 HOH HOH A . F 5 HOH 69 1042 80 HOH HOH A . F 5 HOH 70 1043 81 HOH HOH A . F 5 HOH 71 1044 82 HOH HOH A . F 5 HOH 72 1045 83 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-07-30 2 'Structure model' 1 1 2008-03-05 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-14 5 'Structure model' 1 4 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' struct_ref_seq_dif 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_initial_refinement_model 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_struct_ref_seq_dif.details' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.851 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 15 ? ? -75.12 38.74 2 1 LEU A 16 ? ? -150.66 -18.97 3 1 VAL A 237 ? ? -138.74 -51.56 4 1 ARG A 252 ? ? 86.27 -104.87 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 '1,4-DIETHYLENE DIOXIDE' DIO 4 1,2-ETHANEDIOL EDO 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1FFH _pdbx_initial_refinement_model.details 'PDB ENTRY 1FFH' #