HEADER OXIDOREDUCTASE 20-OCT-06 2NLI TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN L-LACTATE OXIDASE AND A TITLE 2 SUBSTRATE ANALOGUE AT 1.59 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTATE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.13.12.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROCOCCUS VIRIDANS; SOURCE 3 ORGANISM_TAXID: 1377; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS L-LACTATE OXIDASE, FLAVOENZYME, FMN, D-LACTATE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FURUICHI,N.SUZUKI,D.BALASUNDARESAN,Y.YOSHIDA,H.MINAGAWA,Y.WATANABE, AUTHOR 2 H.KANEKO,I.WAGA,P.K.R.KUMAR,H.MIZUNO REVDAT 7 15-NOV-23 2NLI 1 ATOM REVDAT 6 25-OCT-23 2NLI 1 REMARK REVDAT 5 13-JUL-11 2NLI 1 VERSN REVDAT 4 24-FEB-09 2NLI 1 VERSN REVDAT 3 22-APR-08 2NLI 1 JRNL REVDAT 2 30-OCT-07 2NLI 1 REMARK REVDAT 1 23-OCT-07 2NLI 0 JRNL AUTH M.FURUICHI,N.SUZUKI,B.DHAKSHNAMOORHTY,H.MINAGAWA, JRNL AUTH 2 R.YAMAGISHI,Y.WATANABE,Y.GOTO,H.KANEKO,Y.YOSHIDA,H.YAGI, JRNL AUTH 3 I.WAGA,P.K.R.KUMAR,H.MIZUNO JRNL TITL X-RAY STRUCTURES OF AEROCOCCUS VIRIDANS LACTATE OXIDASE AND JRNL TITL 2 ITS COMPLEX WITH D-LACTATE AT PH 4.5 SHOW AN JRNL TITL 3 ALPHA-HYDROXYACID OXIDATION MECHANISM JRNL REF J.MOL.BIOL. V. 378 436 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18367206 JRNL DOI 10.1016/J.JMB.2008.02.062 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 98757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5190 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6615 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 321 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5213 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 621 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.488 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5413 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7341 ; 1.256 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 672 ; 5.144 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 248 ;35.461 ;24.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 857 ;12.517 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;12.562 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 783 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4167 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2813 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3798 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 570 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 162 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3422 ; 0.843 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5345 ; 1.324 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2333 ; 2.135 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1996 ; 3.361 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000040010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103948 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1GOX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 66.21100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.21100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.47250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 66.21100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.21100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.47250 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 66.21100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 66.21100 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.47250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 66.21100 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 66.21100 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.47250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 177 REMARK 465 SER A 178 REMARK 465 GLY A 179 REMARK 465 ARG A 183 REMARK 465 ASP A 184 REMARK 465 VAL A 185 REMARK 465 LYS A 186 REMARK 465 ASN A 187 REMARK 465 LYS A 188 REMARK 465 PHE A 189 REMARK 465 VAL A 190 REMARK 465 SER A 210 REMARK 465 LEU A 211 REMARK 465 ASN A 212 REMARK 465 ASN A 213 REMARK 465 ILE A 214 REMARK 465 THR B 176 REMARK 465 VAL B 177 REMARK 465 SER B 178 REMARK 465 GLY B 179 REMARK 465 ASN B 180 REMARK 465 ARG B 181 REMARK 465 ASP B 182 REMARK 465 ARG B 183 REMARK 465 ASP B 184 REMARK 465 VAL B 185 REMARK 465 LYS B 186 REMARK 465 ASN B 187 REMARK 465 LYS B 188 REMARK 465 PHE B 189 REMARK 465 VAL B 190 REMARK 465 TYR B 191 REMARK 465 PRO B 192 REMARK 465 PHE B 193 REMARK 465 GLY B 194 REMARK 465 MET B 195 REMARK 465 PRO B 196 REMARK 465 ILE B 197 REMARK 465 VAL B 198 REMARK 465 GLN B 199 REMARK 465 ARG B 200 REMARK 465 TYR B 201 REMARK 465 LEU B 202 REMARK 465 ARG B 203 REMARK 465 GLY B 204 REMARK 465 THR B 205 REMARK 465 ALA B 206 REMARK 465 GLU B 207 REMARK 465 GLY B 208 REMARK 465 MET B 209 REMARK 465 SER B 210 REMARK 465 LEU B 211 REMARK 465 ASN B 212 REMARK 465 ASN B 213 REMARK 465 ILE B 214 REMARK 465 TYR B 215 REMARK 465 GLY B 216 REMARK 465 ALA B 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 255 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 255 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2512 O HOH B 2645 2.07 REMARK 500 OD1 ASP A 367 O HOH A 1665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 88 49.65 -82.55 REMARK 500 LYS A 104 -137.59 43.85 REMARK 500 GLN A 269 -105.33 -114.25 REMARK 500 SER A 297 87.17 104.07 REMARK 500 LYS B 104 -140.02 46.47 REMARK 500 TYR B 124 49.80 -107.60 REMARK 500 GLN B 269 -107.56 -112.20 REMARK 500 SER B 297 85.83 103.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE LIGAND, LAC, REPRESENTS D-LACTIC ACID. THE CHEMICAL REMARK 600 COMPONENT DICTIONARY WILL BE RENAMED TO BE CONSIST WITH THE REMARK 600 CORRECT FORM SHORTLY. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 1375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAC A 1376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEO A 1377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 2375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAC B 2376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEO B 2377 DBREF 2NLI A 7 374 UNP Q44467 Q44467_9LACT 7 374 DBREF 2NLI B 7 374 UNP Q44467 Q44467_9LACT 7 374 SEQRES 1 A 368 GLU TYR ASN ALA PRO SER GLU ILE LYS TYR ILE ASP VAL SEQRES 2 A 368 VAL ASN THR TYR ASP LEU GLU GLU GLU ALA SER LYS VAL SEQRES 3 A 368 VAL PRO HIS GLY GLY PHE ASN TYR ILE ALA GLY ALA SER SEQRES 4 A 368 GLY ASP GLU TRP THR LYS ARG ALA ASN ASP ARG ALA TRP SEQRES 5 A 368 LYS HIS LYS LEU LEU TYR PRO ARG LEU ALA GLN ASP VAL SEQRES 6 A 368 GLU ALA PRO ASP THR SER THR GLU ILE LEU GLY HIS LYS SEQRES 7 A 368 ILE LYS ALA PRO PHE ILE MET ALA PRO ILE ALA ALA HIS SEQRES 8 A 368 GLY LEU ALA HIS THR THR LYS GLU ALA GLY THR ALA ARG SEQRES 9 A 368 ALA VAL SER GLU PHE GLY THR ILE MET SER ILE SER ALA SEQRES 10 A 368 TYR SER GLY ALA THR PHE GLU GLU ILE SER GLU GLY LEU SEQRES 11 A 368 ASN GLY GLY PRO ARG TRP PHE GLN ILE TYR MET ALA LYS SEQRES 12 A 368 ASP ASP GLN GLN ASN ARG ASP ILE LEU ASP GLU ALA LYS SEQRES 13 A 368 SER ASP GLY ALA THR ALA ILE ILE LEU THR ALA ASP SER SEQRES 14 A 368 THR VAL SER GLY ASN ARG ASP ARG ASP VAL LYS ASN LYS SEQRES 15 A 368 PHE VAL TYR PRO PHE GLY MET PRO ILE VAL GLN ARG TYR SEQRES 16 A 368 LEU ARG GLY THR ALA GLU GLY MET SER LEU ASN ASN ILE SEQRES 17 A 368 TYR GLY ALA SER LYS GLN LYS ILE SER PRO ARG ASP ILE SEQRES 18 A 368 GLU GLU ILE ALA GLY HIS SER GLY LEU PRO VAL PHE VAL SEQRES 19 A 368 LYS GLY ILE GLN HIS PRO GLU ASP ALA ASP MET ALA ILE SEQRES 20 A 368 LYS ARG GLY ALA SER GLY ILE TRP VAL SER ASN HIS GLY SEQRES 21 A 368 ALA ARG GLN LEU TYR GLU ALA PRO GLY SER PHE ASP THR SEQRES 22 A 368 LEU PRO ALA ILE ALA GLU ARG VAL ASN LYS ARG VAL PRO SEQRES 23 A 368 ILE VAL PHE ASP SER GLY VAL ARG ARG GLY GLU HIS VAL SEQRES 24 A 368 ALA LYS ALA LEU ALA SER GLY ALA ASP VAL VAL ALA LEU SEQRES 25 A 368 GLY ARG PRO VAL LEU PHE GLY LEU ALA LEU GLY GLY TRP SEQRES 26 A 368 GLN GLY ALA TYR SER VAL LEU ASP TYR PHE GLN LYS ASP SEQRES 27 A 368 LEU THR ARG VAL MET GLN LEU THR GLY SER GLN ASN VAL SEQRES 28 A 368 GLU ASP LEU LYS GLY LEU ASP LEU PHE ASP ASN PRO TYR SEQRES 29 A 368 GLY TYR GLU TYR SEQRES 1 B 368 GLU TYR ASN ALA PRO SER GLU ILE LYS TYR ILE ASP VAL SEQRES 2 B 368 VAL ASN THR TYR ASP LEU GLU GLU GLU ALA SER LYS VAL SEQRES 3 B 368 VAL PRO HIS GLY GLY PHE ASN TYR ILE ALA GLY ALA SER SEQRES 4 B 368 GLY ASP GLU TRP THR LYS ARG ALA ASN ASP ARG ALA TRP SEQRES 5 B 368 LYS HIS LYS LEU LEU TYR PRO ARG LEU ALA GLN ASP VAL SEQRES 6 B 368 GLU ALA PRO ASP THR SER THR GLU ILE LEU GLY HIS LYS SEQRES 7 B 368 ILE LYS ALA PRO PHE ILE MET ALA PRO ILE ALA ALA HIS SEQRES 8 B 368 GLY LEU ALA HIS THR THR LYS GLU ALA GLY THR ALA ARG SEQRES 9 B 368 ALA VAL SER GLU PHE GLY THR ILE MET SER ILE SER ALA SEQRES 10 B 368 TYR SER GLY ALA THR PHE GLU GLU ILE SER GLU GLY LEU SEQRES 11 B 368 ASN GLY GLY PRO ARG TRP PHE GLN ILE TYR MET ALA LYS SEQRES 12 B 368 ASP ASP GLN GLN ASN ARG ASP ILE LEU ASP GLU ALA LYS SEQRES 13 B 368 SER ASP GLY ALA THR ALA ILE ILE LEU THR ALA ASP SER SEQRES 14 B 368 THR VAL SER GLY ASN ARG ASP ARG ASP VAL LYS ASN LYS SEQRES 15 B 368 PHE VAL TYR PRO PHE GLY MET PRO ILE VAL GLN ARG TYR SEQRES 16 B 368 LEU ARG GLY THR ALA GLU GLY MET SER LEU ASN ASN ILE SEQRES 17 B 368 TYR GLY ALA SER LYS GLN LYS ILE SER PRO ARG ASP ILE SEQRES 18 B 368 GLU GLU ILE ALA GLY HIS SER GLY LEU PRO VAL PHE VAL SEQRES 19 B 368 LYS GLY ILE GLN HIS PRO GLU ASP ALA ASP MET ALA ILE SEQRES 20 B 368 LYS ARG GLY ALA SER GLY ILE TRP VAL SER ASN HIS GLY SEQRES 21 B 368 ALA ARG GLN LEU TYR GLU ALA PRO GLY SER PHE ASP THR SEQRES 22 B 368 LEU PRO ALA ILE ALA GLU ARG VAL ASN LYS ARG VAL PRO SEQRES 23 B 368 ILE VAL PHE ASP SER GLY VAL ARG ARG GLY GLU HIS VAL SEQRES 24 B 368 ALA LYS ALA LEU ALA SER GLY ALA ASP VAL VAL ALA LEU SEQRES 25 B 368 GLY ARG PRO VAL LEU PHE GLY LEU ALA LEU GLY GLY TRP SEQRES 26 B 368 GLN GLY ALA TYR SER VAL LEU ASP TYR PHE GLN LYS ASP SEQRES 27 B 368 LEU THR ARG VAL MET GLN LEU THR GLY SER GLN ASN VAL SEQRES 28 B 368 GLU ASP LEU LYS GLY LEU ASP LEU PHE ASP ASN PRO TYR SEQRES 29 B 368 GLY TYR GLU TYR HET FMN A1375 31 HET LAC A1376 6 HET PEO A1377 2 HET FMN B2375 31 HET LAC B2376 6 HET PEO B2377 2 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM LAC LACTIC ACID HETNAM PEO HYDROGEN PEROXIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 LAC 2(C3 H6 O3) FORMUL 5 PEO 2(H2 O2) FORMUL 9 HOH *621(H2 O) HELIX 1 1 THR A 22 LYS A 31 1 10 HELIX 2 2 PRO A 34 GLY A 43 1 10 HELIX 3 3 GLU A 48 ALA A 57 1 10 HELIX 4 4 ALA A 96 ALA A 100 5 5 HELIX 5 5 THR A 103 GLY A 116 1 14 HELIX 6 6 THR A 128 ASN A 137 1 10 HELIX 7 7 ASP A 150 ASP A 164 1 15 HELIX 8 8 MET A 195 ARG A 203 1 9 HELIX 9 9 THR A 205 MET A 209 5 5 HELIX 10 10 SER A 223 SER A 234 1 12 HELIX 11 11 HIS A 245 ARG A 255 1 11 HELIX 12 12 GLY A 275 ASN A 288 1 14 HELIX 13 13 ARG A 301 SER A 311 1 11 HELIX 14 14 GLY A 319 GLY A 353 1 35 HELIX 15 15 ASN A 356 GLY A 362 1 7 HELIX 16 16 THR B 22 LYS B 31 1 10 HELIX 17 17 PRO B 34 GLY B 43 1 10 HELIX 18 18 GLU B 48 ALA B 57 1 10 HELIX 19 19 ALA B 96 ALA B 100 5 5 HELIX 20 20 THR B 103 GLY B 116 1 14 HELIX 21 21 THR B 128 ASN B 137 1 10 HELIX 22 22 ASP B 150 ASP B 164 1 15 HELIX 23 23 SER B 223 SER B 234 1 12 HELIX 24 24 HIS B 245 ARG B 255 1 11 HELIX 25 25 GLY B 275 ASN B 288 1 14 HELIX 26 26 ARG B 301 SER B 311 1 11 HELIX 27 27 GLY B 319 THR B 352 1 34 HELIX 28 28 ASN B 356 GLY B 362 1 7 SHEET 1 A 2 LYS A 61 LEU A 63 0 SHEET 2 A 2 LEU A 365 ASP A 367 -1 O PHE A 366 N LEU A 62 SHEET 1 B 2 THR A 78 ILE A 80 0 SHEET 2 B 2 HIS A 83 ILE A 85 -1 O ILE A 85 N THR A 78 SHEET 1 C 8 PHE A 89 MET A 91 0 SHEET 2 C 8 VAL A 315 LEU A 318 1 O LEU A 318 N ILE A 90 SHEET 3 C 8 ILE A 293 PHE A 295 1 N PHE A 295 O ALA A 317 SHEET 4 C 8 GLY A 259 VAL A 262 1 N VAL A 262 O VAL A 294 SHEET 5 C 8 VAL A 238 ILE A 243 1 N VAL A 240 O TRP A 261 SHEET 6 C 8 ILE A 169 THR A 172 1 N LEU A 171 O PHE A 239 SHEET 7 C 8 ARG A 141 ILE A 145 1 N ILE A 145 O ILE A 170 SHEET 8 C 8 MET A 119 ILE A 121 1 N ILE A 121 O GLN A 144 SHEET 1 D 2 LYS B 61 LEU B 63 0 SHEET 2 D 2 LEU B 365 ASP B 367 -1 O PHE B 366 N LEU B 62 SHEET 1 E 2 THR B 78 ILE B 80 0 SHEET 2 E 2 HIS B 83 ILE B 85 -1 O ILE B 85 N THR B 78 SHEET 1 F 8 PHE B 89 MET B 91 0 SHEET 2 F 8 VAL B 315 LEU B 318 1 O LEU B 318 N ILE B 90 SHEET 3 F 8 ILE B 293 PHE B 295 1 N PHE B 295 O ALA B 317 SHEET 4 F 8 GLY B 259 VAL B 262 1 N VAL B 262 O VAL B 294 SHEET 5 F 8 VAL B 238 ILE B 243 1 N VAL B 240 O TRP B 261 SHEET 6 F 8 ILE B 169 THR B 172 1 N LEU B 171 O PHE B 239 SHEET 7 F 8 ARG B 141 ILE B 145 1 N ILE B 145 O ILE B 170 SHEET 8 F 8 MET B 119 ILE B 121 1 N ILE B 121 O GLN B 144 SITE 1 AC1 25 ALA A 92 PRO A 93 ILE A 94 ALA A 95 SITE 2 AC1 25 SER A 122 GLN A 144 TYR A 146 THR A 172 SITE 3 AC1 25 LYS A 241 SER A 263 HIS A 265 GLY A 266 SITE 4 AC1 25 ARG A 268 ASP A 296 SER A 297 GLY A 298 SITE 5 AC1 25 VAL A 299 ARG A 300 GLY A 319 ARG A 320 SITE 6 AC1 25 LAC A1376 PEO A1377 HOH A1379 HOH A1395 SITE 7 AC1 25 HOH A1408 SITE 1 AC2 8 TYR A 40 ALA A 95 TYR A 124 TYR A 146 SITE 2 AC2 8 THR A 176 ARG A 268 FMN A1375 PEO A1377 SITE 1 AC3 3 HIS A 265 FMN A1375 LAC A1376 SITE 1 AC4 26 ILE B 41 ALA B 92 PRO B 93 ILE B 94 SITE 2 AC4 26 ALA B 95 SER B 122 GLN B 144 TYR B 146 SITE 3 AC4 26 THR B 172 LYS B 241 SER B 263 HIS B 265 SITE 4 AC4 26 GLY B 266 ARG B 268 ASP B 296 SER B 297 SITE 5 AC4 26 GLY B 298 VAL B 299 ARG B 300 GLY B 319 SITE 6 AC4 26 ARG B 320 LAC B2376 PEO B2377 HOH B2379 SITE 7 AC4 26 HOH B2385 HOH B2394 SITE 1 AC5 6 TYR B 40 ALA B 95 TYR B 146 ARG B 268 SITE 2 AC5 6 FMN B2375 PEO B2377 SITE 1 AC6 3 HIS B 265 FMN B2375 LAC B2376 CRYST1 132.422 132.422 90.945 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007552 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010996 0.00000