data_2NLM
#
_entry.id 2NLM
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.377
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2NLM pdb_00002nlm 10.2210/pdb2nlm/pdb
NDB DD0087 ? ?
RCSB RCSB040013 ? ?
WWPDB D_1000040013 ? ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 2NLM
_pdbx_database_status.recvd_initial_deposition_date 2006-10-20
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Lee, M.P.H.' 1
'Neidle, S.' 2
#
_citation.id primary
_citation.title 'Crystal structure of the DB 911 - D(CGCGAATTCGCG)2 complex at 2.05 A resolution.'
_citation.journal_abbrev 'To be Published'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year ?
_citation.journal_id_ASTM ?
_citation.country ?
_citation.journal_id_ISSN ?
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Lee, M.P.H.' 1 ?
primary 'Neidle, S.' 2 ?
#
_cell.entry_id 2NLM
_cell.length_a 24.726
_cell.length_b 40.065
_cell.length_c 65.556
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 2NLM
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'" 3663.392 2 ? ? ? ?
2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ?
3 non-polymer syn "2-{4'-[AMINO(IMINO)METHYL]BIPHENYL-3-YL}-1H-BENZIMIDAZOLE-6-CARBOXIMIDAMIDE" 354.408 1 ? ? ? ?
4 water nat water 18.015 45 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DC n
1 4 DG n
1 5 DA n
1 6 DA n
1 7 DT n
1 8 DT n
1 9 DC n
1 10 DG n
1 11 DC n
1 12 DG n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'AT-RICH REGION IN THE GENOME OF ORGANISMS.'
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 2NLM
_struct_ref.pdbx_db_accession 2NLM
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 2NLM A 1 ? 12 ? 2NLM 1 ? 12 ? 1 12
2 1 2NLM B 1 ? 12 ? 2NLM 13 ? 24 ? 13 24
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DB9 non-polymer . "2-{4'-[AMINO(IMINO)METHYL]BIPHENYL-3-YL}-1H-BENZIMIDAZOLE-6-CARBOXIMIDAMIDE" ? 'C21 H18 N6' 354.408
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
#
_exptl.entry_id 2NLM
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.12
_exptl_crystal.density_percent_sol 42.07
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_details
;MAGNESIUM CHLORIDE, DNA DODECAMER, MPD, COMPOUND DB 911, SODIUM CACODYLATE BUFFER, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.00
;
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 'MAGNESIUM CHLORIDE' ? ? ?
1 2 1 MPD ? ? ?
1 3 1 'SODIUM CACODYLATE' ? ? ?
1 4 1 H2O ? ? ?
1 5 2 'MAGNESIUM CHLORIDE' ? ? ?
1 6 2 MPD ? ? ?
1 7 2 'SODIUM CACODYLATE' ? ? ?
1 8 2 H2O ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 105.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'RIGAKU RAXIS IV'
_diffrn_detector.pdbx_collection_date 2006-07-31
_diffrn_detector.details 'OSMIC FOCUSING MIRROR SYSTEM'
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'NI FILTER'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.54178
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU RU200'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.54178
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 2NLM
_reflns.observed_criterion_sigma_I 3.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 20.030
_reflns.d_resolution_high 2.050
_reflns.number_obs 4291
_reflns.number_all ?
_reflns.percent_possible_obs 97.6
_reflns.pdbx_Rmerge_I_obs 0.039
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 16.4000
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 3.360
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 2.05
_reflns_shell.d_res_low 2.12
_reflns_shell.percent_possible_all 98.8
_reflns_shell.Rmerge_I_obs 0.229
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 5.000
_reflns_shell.pdbx_redundancy 3.34
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 2NLM
_refine.ls_number_reflns_obs 4291
_refine.ls_number_reflns_all 4214
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 4.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.00
_refine.ls_d_res_high 2.05
_refine.ls_percent_reflns_obs 97.7
_refine.ls_R_factor_obs 0.256
_refine.ls_R_factor_all 0.258
_refine.ls_R_factor_R_work 0.256
_refine.ls_R_factor_R_free 0.329
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 9.97
_refine.ls_number_reflns_R_free 420
_refine.ls_number_parameters 2239
_refine.ls_number_restraints 2544
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model 'DNA PART OF NDB ENTRY GDL009 OR PDB ENTRY 2DBE.'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'Engh & Huber'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 2NLM
_refine_analyze.Luzzati_coordinate_error_obs ?
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues 0
_refine_analyze.occupancy_sum_hydrogen 0.00
_refine_analyze.occupancy_sum_non_hydrogen 559.00
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 486
_refine_hist.pdbx_number_atoms_ligand 28
_refine_hist.number_atoms_solvent 45
_refine_hist.number_atoms_total 559
_refine_hist.d_res_high 2.05
_refine_hist.d_res_low 8.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
s_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ?
s_angle_d 0.024 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ?
s_from_restr_planes 0.010 ? ? ? 'X-RAY DIFFRACTION' ?
s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ?
s_non_zero_chiral_vol 0.006 ? ? ? 'X-RAY DIFFRACTION' ?
s_anti_bump_dis_restr 0.006 ? ? ? 'X-RAY DIFFRACTION' ?
s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_adp_cmpnt 0.072 ? ? ? 'X-RAY DIFFRACTION' ?
s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ?
#
_pdbx_refine.entry_id 2NLM
_pdbx_refine.R_factor_all_no_cutoff 0.258
_pdbx_refine.R_factor_obs_no_cutoff 0.256
_pdbx_refine.free_R_factor_no_cutoff 0.329
_pdbx_refine.free_R_error_no_cutoff ?
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 9.97
_pdbx_refine.free_R_val_test_set_ct_no_cutoff 420
_pdbx_refine.R_factor_all_4sig_cutoff 0.241
_pdbx_refine.R_factor_obs_4sig_cutoff 0.237
_pdbx_refine.free_R_factor_4sig_cutoff 0.315
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 10.36
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 376
_pdbx_refine.number_reflns_obs_4sig_cutoff 3631
_pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 2NLM
_struct.title 'Crystal structure of the DB 911- D(CGCGAATTCGCG)2 complex at 2.05 A resolution.'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2NLM
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'B-TYPE DNA DODECAMER WITH COMPOUND DB 911., DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 4 ?
F N N 4 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 50 1_555 ? ? ? ? ? ? ? 2.117 ? ?
metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 51 1_555 ? ? ? ? ? ? ? 2.130 ? ?
metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 52 1_555 ? ? ? ? ? ? ? 2.124 ? ?
metalc4 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 42 1_555 ? ? ? ? ? ? ? 2.122 ? ?
metalc5 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 43 1_555 ? ? ? ? ? ? ? 2.129 ? ?
metalc6 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 44 1_555 ? ? ? ? ? ? ? 2.123 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A MG 26 ? 6 'BINDING SITE FOR RESIDUE MG A 26'
AC2 Software B DB9 25 ? 11 'BINDING SITE FOR RESIDUE DB9 B 25'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 6 HOH E . ? HOH A 50 . ? 1_555 ?
2 AC1 6 HOH E . ? HOH A 51 . ? 1_555 ?
3 AC1 6 HOH E . ? HOH A 52 . ? 1_555 ?
4 AC1 6 HOH F . ? HOH B 42 . ? 1_555 ?
5 AC1 6 HOH F . ? HOH B 43 . ? 1_555 ?
6 AC1 6 HOH F . ? HOH B 44 . ? 1_555 ?
7 AC2 11 DA A 6 ? DA A 6 . ? 1_555 ?
8 AC2 11 DT A 7 ? DT A 7 . ? 1_555 ?
9 AC2 11 DT A 8 ? DT A 8 . ? 1_555 ?
10 AC2 11 DC A 9 ? DC A 9 . ? 1_555 ?
11 AC2 11 HOH E . ? HOH A 37 . ? 1_555 ?
12 AC2 11 DA B 5 ? DA B 17 . ? 1_555 ?
13 AC2 11 DA B 6 ? DA B 18 . ? 1_555 ?
14 AC2 11 DT B 7 ? DT B 19 . ? 1_555 ?
15 AC2 11 DT B 8 ? DT B 20 . ? 1_555 ?
16 AC2 11 DC B 9 ? DC B 21 . ? 1_555 ?
17 AC2 11 HOH F . ? HOH B 27 . ? 1_555 ?
#
_database_PDB_matrix.entry_id 2NLM
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 2NLM
_atom_sites.fract_transf_matrix[1][1] 0.040443
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.024959
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.015254
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
MG
N
O
P
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DC 3 3 3 DC C A . n
A 1 4 DG 4 4 4 DG G A . n
A 1 5 DA 5 5 5 DA A A . n
A 1 6 DA 6 6 6 DA A A . n
A 1 7 DT 7 7 7 DT T A . n
A 1 8 DT 8 8 8 DT T A . n
A 1 9 DC 9 9 9 DC C A . n
A 1 10 DG 10 10 10 DG G A . n
A 1 11 DC 11 11 11 DC C A . n
A 1 12 DG 12 12 12 DG G A . n
B 1 1 DC 1 13 13 DC C B . n
B 1 2 DG 2 14 14 DG G B . n
B 1 3 DC 3 15 15 DC C B . n
B 1 4 DG 4 16 16 DG G B . n
B 1 5 DA 5 17 17 DA A B . n
B 1 6 DA 6 18 18 DA A B . n
B 1 7 DT 7 19 19 DT T B . n
B 1 8 DT 8 20 20 DT T B . n
B 1 9 DC 9 21 21 DC C B . n
B 1 10 DG 10 22 22 DG G B . n
B 1 11 DC 11 23 23 DC C B . n
B 1 12 DG 12 24 24 DG G B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG 1 26 26 MG MG A .
D 3 DB9 1 25 25 DB9 DB9 B .
E 4 HOH 1 27 27 HOH HOH A .
E 4 HOH 2 28 29 HOH HOH A .
E 4 HOH 3 29 31 HOH HOH A .
E 4 HOH 4 30 32 HOH HOH A .
E 4 HOH 5 31 33 HOH HOH A .
E 4 HOH 6 32 34 HOH HOH A .
E 4 HOH 7 33 35 HOH HOH A .
E 4 HOH 8 34 36 HOH HOH A .
E 4 HOH 9 35 37 HOH HOH A .
E 4 HOH 10 36 38 HOH HOH A .
E 4 HOH 11 37 39 HOH HOH A .
E 4 HOH 12 38 41 HOH HOH A .
E 4 HOH 13 39 42 HOH HOH A .
E 4 HOH 14 40 44 HOH HOH A .
E 4 HOH 15 41 49 HOH HOH A .
E 4 HOH 16 42 55 HOH HOH A .
E 4 HOH 17 43 58 HOH HOH A .
E 4 HOH 18 44 60 HOH HOH A .
E 4 HOH 19 45 61 HOH HOH A .
E 4 HOH 20 46 62 HOH HOH A .
E 4 HOH 21 47 63 HOH HOH A .
E 4 HOH 22 48 64 HOH HOH A .
E 4 HOH 23 49 65 HOH HOH A .
E 4 HOH 24 50 67 HOH HOH A .
E 4 HOH 25 51 68 HOH HOH A .
E 4 HOH 26 52 71 HOH HOH A .
F 4 HOH 1 26 28 HOH HOH B .
F 4 HOH 2 27 30 HOH HOH B .
F 4 HOH 3 28 40 HOH HOH B .
F 4 HOH 4 29 43 HOH HOH B .
F 4 HOH 5 30 45 HOH HOH B .
F 4 HOH 6 31 46 HOH HOH B .
F 4 HOH 7 32 47 HOH HOH B .
F 4 HOH 8 33 48 HOH HOH B .
F 4 HOH 9 34 50 HOH HOH B .
F 4 HOH 10 35 51 HOH HOH B .
F 4 HOH 11 36 52 HOH HOH B .
F 4 HOH 12 37 53 HOH HOH B .
F 4 HOH 13 38 54 HOH HOH B .
F 4 HOH 14 39 56 HOH HOH B .
F 4 HOH 15 40 57 HOH HOH B .
F 4 HOH 16 41 59 HOH HOH B .
F 4 HOH 17 42 66 HOH HOH B .
F 4 HOH 18 43 69 HOH HOH B .
F 4 HOH 19 44 70 HOH HOH B .
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text 'minor groove binder'
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O ? E HOH . ? A HOH 50 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 51 ? 1_555 90.1 ?
2 O ? E HOH . ? A HOH 50 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 52 ? 1_555 89.6 ?
3 O ? E HOH . ? A HOH 51 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 52 ? 1_555 91.0 ?
4 O ? E HOH . ? A HOH 50 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 42 ? 1_555 90.6 ?
5 O ? E HOH . ? A HOH 51 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 42 ? 1_555 178.7 ?
6 O ? E HOH . ? A HOH 52 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 42 ? 1_555 90.1 ?
7 O ? E HOH . ? A HOH 50 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 43 ? 1_555 178.5 ?
8 O ? E HOH . ? A HOH 51 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 43 ? 1_555 89.5 ?
9 O ? E HOH . ? A HOH 52 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 43 ? 1_555 89.0 ?
10 O ? F HOH . ? B HOH 42 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 43 ? 1_555 89.8 ?
11 O ? E HOH . ? A HOH 50 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 44 ? 1_555 91.1 ?
12 O ? E HOH . ? A HOH 51 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 44 ? 1_555 89.4 ?
13 O ? E HOH . ? A HOH 52 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 44 ? 1_555 179.2 ?
14 O ? F HOH . ? B HOH 42 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 44 ? 1_555 89.5 ?
15 O ? F HOH . ? B HOH 43 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 44 ? 1_555 90.3 ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2007-10-30
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2019-07-24
4 'Structure model' 1 3 2023-08-30
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Refinement description'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' 'Database references'
6 4 'Structure model' 'Derived calculations'
7 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' software
2 4 'Structure model' chem_comp_atom
3 4 'Structure model' chem_comp_bond
4 4 'Structure model' database_2
5 4 'Structure model' pdbx_initial_refinement_model
6 4 'Structure model' pdbx_struct_conn_angle
7 4 'Structure model' struct_conn
8 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_software.classification'
2 3 'Structure model' '_software.name'
3 4 'Structure model' '_database_2.pdbx_DOI'
4 4 'Structure model' '_database_2.pdbx_database_accession'
5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'
6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'
9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
11 4 'Structure model' '_pdbx_struct_conn_angle.value'
12 4 'Structure model' '_struct_conn.pdbx_dist_value'
13 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
15 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
16 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
17 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
18 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
SHELXL-97 refinement . ? 1
CNS refinement . ? 2
CrystalClear 'data collection' . ? 3
d*TREK 'data reduction' . ? 4
d*TREK 'data scaling' . ? 5
CNS phasing . ? 6
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 97.11 102.40 -5.29 0.80 N
2 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DC 11 ? ? 127.07 119.70 7.37 1.20 Y
3 1 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 127.78 119.70 8.08 1.20 Y
4 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 103.53 108.00 -4.47 0.70 N
5 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.40 108.30 2.10 0.30 N
6 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 111.55 108.30 3.25 0.30 N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DB9 C1 C Y N 37
DB9 C2 C Y N 38
DB9 C3 C Y N 39
DB9 C4 C Y N 40
DB9 C5 C Y N 41
DB9 C6 C Y N 42
DB9 C7 C Y N 43
DB9 C8 C Y N 44
DB9 C9 C Y N 45
DB9 C10 C Y N 46
DB9 C11 C Y N 47
DB9 C12 C Y N 48
DB9 C13 C N N 49
DB9 N14 N N N 50
DB9 N15 N N N 51
DB9 C16 C Y N 52
DB9 N17 N Y N 53
DB9 C18 C Y N 54
DB9 C19 C Y N 55
DB9 N20 N Y N 56
DB9 C21 C Y N 57
DB9 C22 C Y N 58
DB9 C23 C Y N 59
DB9 C24 C Y N 60
DB9 C25 C N N 61
DB9 N26 N N N 62
DB9 N27 N N N 63
DB9 H1 H N N 64
DB9 H3 H N N 65
DB9 H4 H N N 66
DB9 H6 H N N 67
DB9 H8 H N N 68
DB9 H9 H N N 69
DB9 H10 H N N 70
DB9 H12 H N N 71
DB9 H141 H N N 72
DB9 H142 H N N 73
DB9 HN15 H N N 74
DB9 HN17 H N N 75
DB9 H21 H N N 76
DB9 H22 H N N 77
DB9 H24 H N N 78
DB9 H261 H N N 79
DB9 H262 H N N 80
DB9 HN27 H N N 81
DC OP3 O N N 82
DC P P N N 83
DC OP1 O N N 84
DC OP2 O N N 85
DC "O5'" O N N 86
DC "C5'" C N N 87
DC "C4'" C N R 88
DC "O4'" O N N 89
DC "C3'" C N S 90
DC "O3'" O N N 91
DC "C2'" C N N 92
DC "C1'" C N R 93
DC N1 N N N 94
DC C2 C N N 95
DC O2 O N N 96
DC N3 N N N 97
DC C4 C N N 98
DC N4 N N N 99
DC C5 C N N 100
DC C6 C N N 101
DC HOP3 H N N 102
DC HOP2 H N N 103
DC "H5'" H N N 104
DC "H5''" H N N 105
DC "H4'" H N N 106
DC "H3'" H N N 107
DC "HO3'" H N N 108
DC "H2'" H N N 109
DC "H2''" H N N 110
DC "H1'" H N N 111
DC H41 H N N 112
DC H42 H N N 113
DC H5 H N N 114
DC H6 H N N 115
DG OP3 O N N 116
DG P P N N 117
DG OP1 O N N 118
DG OP2 O N N 119
DG "O5'" O N N 120
DG "C5'" C N N 121
DG "C4'" C N R 122
DG "O4'" O N N 123
DG "C3'" C N S 124
DG "O3'" O N N 125
DG "C2'" C N N 126
DG "C1'" C N R 127
DG N9 N Y N 128
DG C8 C Y N 129
DG N7 N Y N 130
DG C5 C Y N 131
DG C6 C N N 132
DG O6 O N N 133
DG N1 N N N 134
DG C2 C N N 135
DG N2 N N N 136
DG N3 N N N 137
DG C4 C Y N 138
DG HOP3 H N N 139
DG HOP2 H N N 140
DG "H5'" H N N 141
DG "H5''" H N N 142
DG "H4'" H N N 143
DG "H3'" H N N 144
DG "HO3'" H N N 145
DG "H2'" H N N 146
DG "H2''" H N N 147
DG "H1'" H N N 148
DG H8 H N N 149
DG H1 H N N 150
DG H21 H N N 151
DG H22 H N N 152
DT OP3 O N N 153
DT P P N N 154
DT OP1 O N N 155
DT OP2 O N N 156
DT "O5'" O N N 157
DT "C5'" C N N 158
DT "C4'" C N R 159
DT "O4'" O N N 160
DT "C3'" C N S 161
DT "O3'" O N N 162
DT "C2'" C N N 163
DT "C1'" C N R 164
DT N1 N N N 165
DT C2 C N N 166
DT O2 O N N 167
DT N3 N N N 168
DT C4 C N N 169
DT O4 O N N 170
DT C5 C N N 171
DT C7 C N N 172
DT C6 C N N 173
DT HOP3 H N N 174
DT HOP2 H N N 175
DT "H5'" H N N 176
DT "H5''" H N N 177
DT "H4'" H N N 178
DT "H3'" H N N 179
DT "HO3'" H N N 180
DT "H2'" H N N 181
DT "H2''" H N N 182
DT "H1'" H N N 183
DT H3 H N N 184
DT H71 H N N 185
DT H72 H N N 186
DT H73 H N N 187
DT H6 H N N 188
HOH O O N N 189
HOH H1 H N N 190
HOH H2 H N N 191
MG MG MG N N 192
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DB9 C1 C2 doub Y N 39
DB9 C1 C6 sing Y N 40
DB9 C1 H1 sing N N 41
DB9 C2 C13 sing N N 42
DB9 C2 C3 sing Y N 43
DB9 C3 C4 doub Y N 44
DB9 C3 H3 sing N N 45
DB9 C4 C5 sing Y N 46
DB9 C4 H4 sing N N 47
DB9 C5 C6 doub Y N 48
DB9 C5 C7 sing Y N 49
DB9 C6 H6 sing N N 50
DB9 C7 C8 doub Y N 51
DB9 C7 C12 sing Y N 52
DB9 C8 C9 sing Y N 53
DB9 C8 H8 sing N N 54
DB9 C9 C10 doub Y N 55
DB9 C9 H9 sing N N 56
DB9 C10 C11 sing Y N 57
DB9 C10 H10 sing N N 58
DB9 C11 C12 doub Y N 59
DB9 C11 C16 sing Y N 60
DB9 C12 H12 sing N N 61
DB9 C13 N14 sing N N 62
DB9 C13 N15 doub N E 63
DB9 N14 H141 sing N N 64
DB9 N14 H142 sing N N 65
DB9 N15 HN15 sing N N 66
DB9 C16 N17 sing Y N 67
DB9 C16 N20 doub Y N 68
DB9 N17 C18 sing Y N 69
DB9 N17 HN17 sing N N 70
DB9 C18 C19 doub Y N 71
DB9 C18 C24 sing Y N 72
DB9 C19 N20 sing Y N 73
DB9 C19 C21 sing Y N 74
DB9 C21 C22 doub Y N 75
DB9 C21 H21 sing N N 76
DB9 C22 C23 sing Y N 77
DB9 C22 H22 sing N N 78
DB9 C23 C24 doub Y N 79
DB9 C23 C25 sing N N 80
DB9 C24 H24 sing N N 81
DB9 C25 N26 sing N N 82
DB9 C25 N27 doub N E 83
DB9 N26 H261 sing N N 84
DB9 N26 H262 sing N N 85
DB9 N27 HN27 sing N N 86
DC OP3 P sing N N 87
DC OP3 HOP3 sing N N 88
DC P OP1 doub N N 89
DC P OP2 sing N N 90
DC P "O5'" sing N N 91
DC OP2 HOP2 sing N N 92
DC "O5'" "C5'" sing N N 93
DC "C5'" "C4'" sing N N 94
DC "C5'" "H5'" sing N N 95
DC "C5'" "H5''" sing N N 96
DC "C4'" "O4'" sing N N 97
DC "C4'" "C3'" sing N N 98
DC "C4'" "H4'" sing N N 99
DC "O4'" "C1'" sing N N 100
DC "C3'" "O3'" sing N N 101
DC "C3'" "C2'" sing N N 102
DC "C3'" "H3'" sing N N 103
DC "O3'" "HO3'" sing N N 104
DC "C2'" "C1'" sing N N 105
DC "C2'" "H2'" sing N N 106
DC "C2'" "H2''" sing N N 107
DC "C1'" N1 sing N N 108
DC "C1'" "H1'" sing N N 109
DC N1 C2 sing N N 110
DC N1 C6 sing N N 111
DC C2 O2 doub N N 112
DC C2 N3 sing N N 113
DC N3 C4 doub N N 114
DC C4 N4 sing N N 115
DC C4 C5 sing N N 116
DC N4 H41 sing N N 117
DC N4 H42 sing N N 118
DC C5 C6 doub N N 119
DC C5 H5 sing N N 120
DC C6 H6 sing N N 121
DG OP3 P sing N N 122
DG OP3 HOP3 sing N N 123
DG P OP1 doub N N 124
DG P OP2 sing N N 125
DG P "O5'" sing N N 126
DG OP2 HOP2 sing N N 127
DG "O5'" "C5'" sing N N 128
DG "C5'" "C4'" sing N N 129
DG "C5'" "H5'" sing N N 130
DG "C5'" "H5''" sing N N 131
DG "C4'" "O4'" sing N N 132
DG "C4'" "C3'" sing N N 133
DG "C4'" "H4'" sing N N 134
DG "O4'" "C1'" sing N N 135
DG "C3'" "O3'" sing N N 136
DG "C3'" "C2'" sing N N 137
DG "C3'" "H3'" sing N N 138
DG "O3'" "HO3'" sing N N 139
DG "C2'" "C1'" sing N N 140
DG "C2'" "H2'" sing N N 141
DG "C2'" "H2''" sing N N 142
DG "C1'" N9 sing N N 143
DG "C1'" "H1'" sing N N 144
DG N9 C8 sing Y N 145
DG N9 C4 sing Y N 146
DG C8 N7 doub Y N 147
DG C8 H8 sing N N 148
DG N7 C5 sing Y N 149
DG C5 C6 sing N N 150
DG C5 C4 doub Y N 151
DG C6 O6 doub N N 152
DG C6 N1 sing N N 153
DG N1 C2 sing N N 154
DG N1 H1 sing N N 155
DG C2 N2 sing N N 156
DG C2 N3 doub N N 157
DG N2 H21 sing N N 158
DG N2 H22 sing N N 159
DG N3 C4 sing N N 160
DT OP3 P sing N N 161
DT OP3 HOP3 sing N N 162
DT P OP1 doub N N 163
DT P OP2 sing N N 164
DT P "O5'" sing N N 165
DT OP2 HOP2 sing N N 166
DT "O5'" "C5'" sing N N 167
DT "C5'" "C4'" sing N N 168
DT "C5'" "H5'" sing N N 169
DT "C5'" "H5''" sing N N 170
DT "C4'" "O4'" sing N N 171
DT "C4'" "C3'" sing N N 172
DT "C4'" "H4'" sing N N 173
DT "O4'" "C1'" sing N N 174
DT "C3'" "O3'" sing N N 175
DT "C3'" "C2'" sing N N 176
DT "C3'" "H3'" sing N N 177
DT "O3'" "HO3'" sing N N 178
DT "C2'" "C1'" sing N N 179
DT "C2'" "H2'" sing N N 180
DT "C2'" "H2''" sing N N 181
DT "C1'" N1 sing N N 182
DT "C1'" "H1'" sing N N 183
DT N1 C2 sing N N 184
DT N1 C6 sing N N 185
DT C2 O2 doub N N 186
DT C2 N3 sing N N 187
DT N3 C4 sing N N 188
DT N3 H3 sing N N 189
DT C4 O4 doub N N 190
DT C4 C5 sing N N 191
DT C5 C7 sing N N 192
DT C5 C6 doub N N 193
DT C7 H71 sing N N 194
DT C7 H72 sing N N 195
DT C7 H73 sing N N 196
DT C6 H6 sing N N 197
HOH O H1 sing N N 198
HOH O H2 sing N N 199
#
_ndb_struct_conf_na.entry_id 2NLM
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 B DG 12 1_555 0.060 0.049 -0.017 10.300 -16.630 -1.694 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1
1 A DG 2 1_555 B DC 11 1_555 -0.105 -0.323 -0.245 -1.025 -12.103 -6.823 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1
1 A DC 3 1_555 B DG 10 1_555 -0.052 -0.225 0.049 -3.782 -12.313 1.828 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1
1 A DG 4 1_555 B DC 9 1_555 -0.689 -0.303 0.200 16.358 -5.695 -1.637 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1
1 A DA 5 1_555 B DT 8 1_555 0.086 -0.234 0.336 13.945 -18.431 -0.072 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1
1 A DA 6 1_555 B DT 7 1_555 -0.119 0.029 -0.020 2.183 -18.184 6.098 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1
1 A DT 7 1_555 B DA 6 1_555 -0.431 0.033 0.381 -5.229 -17.038 5.331 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1
1 A DT 8 1_555 B DA 5 1_555 0.064 -0.180 -0.120 0.091 -21.844 1.807 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1
1 A DC 9 1_555 B DG 4 1_555 0.125 0.096 0.446 -14.953 -14.960 2.192 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1
1 A DG 10 1_555 B DC 3 1_555 0.170 -0.265 0.042 -1.098 -3.657 0.203 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1
1 A DC 11 1_555 B DG 2 1_555 -0.419 -0.078 0.475 -0.466 -18.663 -7.023 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1
1 A DG 12 1_555 B DC 1 1_555 -0.850 -0.437 -1.147 1.555 20.300 -8.088 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.313 0.111 3.663 3.312 7.249 36.514 -0.898 0.979 3.578 11.403
-5.209 37.345 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ?
1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 1.021 0.648 3.292 0.519 -3.180 39.686 1.320 -1.439 3.245 -4.674
-0.762 39.811 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ?
1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.198 0.820 2.979 -0.852 9.743 25.661 -0.575 0.216 3.082 20.989
1.836 27.433 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ?
1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.097 -0.223 3.296 -0.357 3.273 38.867 -0.731 0.102 3.268 4.908
0.535 39.001 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ?
1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.353 -0.400 3.524 2.636 2.101 35.899 -0.968 -0.167 3.512 3.399
-4.265 36.052 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ?
1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.019 -0.807 3.353 -2.417 -0.447 31.078 -1.415 -0.438 3.355 -0.832
4.502 31.173 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ?
1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.268 -0.126 3.075 5.899 -2.876 36.674 0.160 1.152 2.999 -4.526
-9.284 37.237 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ?
1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.012 -0.045 3.586 -2.811 -1.442 40.684 0.110 -0.357 3.577 -2.071
4.036 40.801 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ?
1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.531 0.891 3.154 0.560 4.105 29.951 0.889 -0.906 3.253 7.896
-1.078 30.229 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ?
1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.248 0.567 3.362 -5.705 -13.284 39.127 2.247 1.135 3.159 -19.063
8.186 41.614 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ?
1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.228 0.393 3.673 12.705 -8.619 35.558 1.845 -0.013 3.696 -13.371
-19.710 38.632 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'MAGNESIUM ION' MG
3 "2-{4'-[AMINO(IMINO)METHYL]BIPHENYL-3-YL}-1H-BENZIMIDAZOLE-6-CARBOXIMIDAMIDE" DB9
4 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 2DBE
_pdbx_initial_refinement_model.details 'DNA PART OF NDB ENTRY GDL009 OR PDB ENTRY 2DBE.'
#