data_2NMY # _entry.id 2NMY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2NMY pdb_00002nmy 10.2210/pdb2nmy/pdb RCSB RCSB040058 ? ? WWPDB D_1000040058 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-03-13 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2013-02-27 5 'Structure model' 1 4 2017-10-18 6 'Structure model' 1 5 2021-10-20 7 'Structure model' 1 6 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Other 9 5 'Structure model' 'Refinement description' 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Derived calculations' 12 6 'Structure model' 'Structure summary' 13 7 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' chem_comp 3 6 'Structure model' database_2 4 6 'Structure model' entity 5 6 'Structure model' pdbx_entity_nonpoly 6 6 'Structure model' pdbx_struct_conn_angle 7 6 'Structure model' struct_conn 8 6 'Structure model' struct_ref_seq_dif 9 6 'Structure model' struct_site 10 7 'Structure model' chem_comp_atom 11 7 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.name' 3 6 'Structure model' '_chem_comp.name' 4 6 'Structure model' '_chem_comp.pdbx_synonyms' 5 6 'Structure model' '_database_2.pdbx_DOI' 6 6 'Structure model' '_database_2.pdbx_database_accession' 7 6 'Structure model' '_entity.pdbx_description' 8 6 'Structure model' '_pdbx_entity_nonpoly.name' 9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 12 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 13 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 14 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 6 'Structure model' '_pdbx_struct_conn_angle.value' 20 6 'Structure model' '_struct_conn.pdbx_dist_value' 21 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 33 6 'Structure model' '_struct_ref_seq_dif.details' 34 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2NMY _pdbx_database_status.recvd_initial_deposition_date 2006-10-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2NMW 'WT-SAQUINAVIR COMPLEX' unspecified PDB 2NMZ . unspecified PDB 2NNK . unspecified PDB 2NNP . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tie, Y.' 1 'Kovalevsky, A.Y.' 2 'Boross, P.' 3 'Wang, Y.F.' 4 'Ghosh, A.K.' 5 'Tozser, J.' 6 'Harrison, R.W.' 7 'Weber, I.T.' 8 # _citation.id primary _citation.title 'Atomic resolution crystal structures of HIV-1 protease and mutants V82A and I84V with saquinavir.' _citation.journal_abbrev Proteins _citation.journal_volume 67 _citation.page_first 232 _citation.page_last 242 _citation.year 2007 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17243183 _citation.pdbx_database_id_DOI 10.1002/prot.21304 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tie, Y.' 1 ? primary 'Kovalevsky, A.Y.' 2 ? primary 'Boross, P.' 3 ? primary 'Wang, Y.F.' 4 ? primary 'Ghosh, A.K.' 5 ? primary 'Tozser, J.' 6 ? primary 'Harrison, R.W.' 7 ? primary 'Weber, I.T.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man PROTEASE 10712.623 2 3.4.23.16 Q506K,L532I,L562I,C566A,V581A,C594A ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 non-polymer syn ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; 670.841 1 ? ? ? ? 6 water nat water 18.015 219 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RETROPEPSIN, PR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PANIIGRNLLTQIGATLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PANIIGRNLLTQIGATLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'SODIUM ION' NA 4 'SULFATE ION' SO4 5 ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; ROC 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 ILE n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 ILE n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 ALA n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 ALA n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 ALA n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lentivirus _entity_src_gen.pdbx_gene_src_gene gag _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET11A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 ROC peptide-like . ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; 'Fortovase; SAQUINAVIR; RO 31-8959' 'C38 H50 N6 O5' 670.841 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 101 101 PRO PRO B . n B 1 2 GLN 2 102 102 GLN GLN B . n B 1 3 ILE 3 103 103 ILE ILE B . n B 1 4 THR 4 104 104 THR THR B . n B 1 5 LEU 5 105 105 LEU LEU B . n B 1 6 TRP 6 106 106 TRP TRP B . n B 1 7 LYS 7 107 107 LYS LYS B . n B 1 8 ARG 8 108 108 ARG ARG B . n B 1 9 PRO 9 109 109 PRO PRO B . n B 1 10 LEU 10 110 110 LEU LEU B . n B 1 11 VAL 11 111 111 VAL VAL B . n B 1 12 THR 12 112 112 THR THR B . n B 1 13 ILE 13 113 113 ILE ILE B . n B 1 14 LYS 14 114 114 LYS LYS B . n B 1 15 ILE 15 115 115 ILE ILE B . n B 1 16 GLY 16 116 116 GLY GLY B . n B 1 17 GLY 17 117 117 GLY GLY B . n B 1 18 GLN 18 118 118 GLN GLN B . n B 1 19 LEU 19 119 119 LEU LEU B . n B 1 20 LYS 20 120 120 LYS LYS B . n B 1 21 GLU 21 121 121 GLU GLU B . n B 1 22 ALA 22 122 122 ALA ALA B . n B 1 23 LEU 23 123 123 LEU LEU B . n B 1 24 LEU 24 124 124 LEU LEU B . n B 1 25 ASP 25 125 125 ASP ASP B . n B 1 26 THR 26 126 126 THR THR B . n B 1 27 GLY 27 127 127 GLY GLY B . n B 1 28 ALA 28 128 128 ALA ALA B . n B 1 29 ASP 29 129 129 ASP ASP B . n B 1 30 ASP 30 130 130 ASP ASP B . n B 1 31 THR 31 131 131 THR THR B . n B 1 32 VAL 32 132 132 VAL VAL B . n B 1 33 ILE 33 133 133 ILE ILE B . n B 1 34 GLU 34 134 134 GLU GLU B . n B 1 35 GLU 35 135 135 GLU GLU B . n B 1 36 MET 36 136 136 MET MET B . n B 1 37 SER 37 137 137 SER SER B . n B 1 38 LEU 38 138 138 LEU LEU B . n B 1 39 PRO 39 139 139 PRO PRO B . n B 1 40 GLY 40 140 140 GLY GLY B . n B 1 41 ARG 41 141 141 ARG ARG B . n B 1 42 TRP 42 142 142 TRP TRP B . n B 1 43 LYS 43 143 143 LYS LYS B . n B 1 44 PRO 44 144 144 PRO PRO B . n B 1 45 LYS 45 145 145 LYS LYS B . n B 1 46 MET 46 146 146 MET MET B . n B 1 47 ILE 47 147 147 ILE ILE B . n B 1 48 GLY 48 148 148 GLY GLY B . n B 1 49 GLY 49 149 149 GLY GLY B . n B 1 50 ILE 50 150 150 ILE ILE B . n B 1 51 GLY 51 151 151 GLY GLY B . n B 1 52 GLY 52 152 152 GLY GLY B . n B 1 53 PHE 53 153 153 PHE PHE B . n B 1 54 ILE 54 154 154 ILE ILE B . n B 1 55 LYS 55 155 155 LYS LYS B . n B 1 56 VAL 56 156 156 VAL VAL B . n B 1 57 ARG 57 157 157 ARG ARG B . n B 1 58 GLN 58 158 158 GLN GLN B . n B 1 59 TYR 59 159 159 TYR TYR B . n B 1 60 ASP 60 160 160 ASP ASP B . n B 1 61 GLN 61 161 161 GLN GLN B . n B 1 62 ILE 62 162 162 ILE ILE B . n B 1 63 ILE 63 163 163 ILE ILE B . n B 1 64 ILE 64 164 164 ILE ILE B . n B 1 65 GLU 65 165 165 GLU GLU B . n B 1 66 ILE 66 166 166 ILE ILE B . n B 1 67 ALA 67 167 167 ALA ALA B . n B 1 68 GLY 68 168 168 GLY GLY B . n B 1 69 HIS 69 169 169 HIS HIS B . n B 1 70 LYS 70 170 170 LYS LYS B . n B 1 71 ALA 71 171 171 ALA ALA B . n B 1 72 ILE 72 172 172 ILE ILE B . n B 1 73 GLY 73 173 173 GLY GLY B . n B 1 74 THR 74 174 174 THR THR B . n B 1 75 VAL 75 175 175 VAL VAL B . n B 1 76 LEU 76 176 176 LEU LEU B . n B 1 77 VAL 77 177 177 VAL VAL B . n B 1 78 GLY 78 178 178 GLY GLY B . n B 1 79 PRO 79 179 179 PRO PRO B . n B 1 80 THR 80 180 180 THR THR B . n B 1 81 PRO 81 181 181 PRO PRO B . n B 1 82 ALA 82 182 182 ALA ALA B . n B 1 83 ASN 83 183 183 ASN ASN B . n B 1 84 ILE 84 184 184 ILE ILE B . n B 1 85 ILE 85 185 185 ILE ILE B . n B 1 86 GLY 86 186 186 GLY GLY B . n B 1 87 ARG 87 187 187 ARG ARG B . n B 1 88 ASN 88 188 188 ASN ASN B . n B 1 89 LEU 89 189 189 LEU LEU B . n B 1 90 LEU 90 190 190 LEU LEU B . n B 1 91 THR 91 191 191 THR THR B . n B 1 92 GLN 92 192 192 GLN GLN B . n B 1 93 ILE 93 193 193 ILE ILE B . n B 1 94 GLY 94 194 194 GLY GLY B . n B 1 95 ALA 95 195 195 ALA ALA B . n B 1 96 THR 96 196 196 THR THR B . n B 1 97 LEU 97 197 197 LEU LEU B . n B 1 98 ASN 98 198 198 ASN ASN B . n B 1 99 PHE 99 199 199 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 502 502 CL CHL A . D 3 NA 1 503 503 NA SOD A . E 4 SO4 1 504 504 SO4 SO4 A . F 5 ROC 1 401 401 ROC SQV A . G 2 CL 1 501 501 CL CHL B . H 6 HOH 1 1001 1001 HOH HOH A . H 6 HOH 2 1002 1002 HOH HOH A . H 6 HOH 3 1003 1003 HOH HOH A . H 6 HOH 4 1006 1006 HOH HOH A . H 6 HOH 5 1007 1007 HOH HOH A . H 6 HOH 6 1009 1009 HOH HOH A . H 6 HOH 7 1010 1010 HOH HOH A . H 6 HOH 8 1011 1011 HOH HOH A . H 6 HOH 9 1012 1012 HOH HOH A . H 6 HOH 10 1017 1017 HOH HOH A . H 6 HOH 11 1018 1018 HOH HOH A . H 6 HOH 12 1019 1019 HOH HOH A . H 6 HOH 13 1020 1020 HOH HOH A . H 6 HOH 14 1022 1022 HOH HOH A . H 6 HOH 15 1026 1026 HOH HOH A . H 6 HOH 16 1027 1027 HOH HOH A . H 6 HOH 17 1029 1029 HOH HOH A . H 6 HOH 18 1036 1036 HOH HOH A . H 6 HOH 19 1039 1039 HOH HOH A . H 6 HOH 20 1041 1041 HOH HOH A . H 6 HOH 21 1042 1042 HOH HOH A . H 6 HOH 22 1045 1045 HOH HOH A . H 6 HOH 23 1047 1047 HOH HOH A . H 6 HOH 24 1048 1048 HOH HOH A . H 6 HOH 25 1050 1050 HOH HOH A . H 6 HOH 26 1053 1053 HOH HOH A . H 6 HOH 27 1055 1055 HOH HOH A . H 6 HOH 28 1057 1057 HOH HOH A . H 6 HOH 29 1058 1058 HOH HOH A . H 6 HOH 30 1061 1061 HOH HOH A . H 6 HOH 31 1064 1064 HOH HOH A . H 6 HOH 32 1068 1068 HOH HOH A . H 6 HOH 33 1072 1072 HOH HOH A . H 6 HOH 34 1075 1075 HOH HOH A . H 6 HOH 35 1076 1076 HOH HOH A . H 6 HOH 36 1080 1080 HOH HOH A . H 6 HOH 37 1081 1081 HOH HOH A . H 6 HOH 38 1082 1082 HOH HOH A . H 6 HOH 39 1086 1086 HOH HOH A . H 6 HOH 40 1087 1087 HOH HOH A . H 6 HOH 41 1088 1088 HOH HOH A . H 6 HOH 42 1089 1089 HOH HOH A . H 6 HOH 43 1093 1093 HOH HOH A . H 6 HOH 44 1095 1095 HOH HOH A . H 6 HOH 45 1098 1098 HOH HOH A . H 6 HOH 46 1099 1099 HOH HOH A . H 6 HOH 47 1100 1100 HOH HOH A . H 6 HOH 48 1101 1101 HOH HOH A . H 6 HOH 49 1104 1104 HOH HOH A . H 6 HOH 50 1108 1108 HOH HOH A . H 6 HOH 51 1110 1110 HOH HOH A . H 6 HOH 52 1111 1111 HOH HOH A . H 6 HOH 53 1112 1112 HOH HOH A . H 6 HOH 54 1113 1113 HOH HOH A . H 6 HOH 55 1115 1115 HOH HOH A . H 6 HOH 56 1118 1118 HOH HOH A . H 6 HOH 57 1119 1119 HOH HOH A . H 6 HOH 58 1120 1120 HOH HOH A . H 6 HOH 59 1122 1122 HOH HOH A . H 6 HOH 60 1125 1125 HOH HOH A . H 6 HOH 61 1126 1126 HOH HOH A . H 6 HOH 62 1127 1127 HOH HOH A . H 6 HOH 63 1129 1129 HOH HOH A . H 6 HOH 64 1132 1132 HOH HOH A . H 6 HOH 65 1136 1136 HOH HOH A . H 6 HOH 66 1137 1137 HOH HOH A . H 6 HOH 67 1138 1138 HOH HOH A . H 6 HOH 68 1141 1141 HOH HOH A . H 6 HOH 69 1142 1142 HOH HOH A . H 6 HOH 70 1143 1143 HOH HOH A . H 6 HOH 71 1147 1147 HOH HOH A . H 6 HOH 72 1153 1153 HOH HOH A . H 6 HOH 73 1154 1154 HOH HOH A . H 6 HOH 74 1155 1155 HOH HOH A . H 6 HOH 75 1156 1156 HOH HOH A . H 6 HOH 76 1157 1157 HOH HOH A . H 6 HOH 77 1161 1161 HOH HOH A . H 6 HOH 78 1164 1164 HOH HOH A . H 6 HOH 79 1167 1167 HOH HOH A . H 6 HOH 80 1168 1168 HOH HOH A . H 6 HOH 81 1171 1171 HOH HOH A . H 6 HOH 82 1172 1172 HOH HOH A . H 6 HOH 83 1173 1173 HOH HOH A . H 6 HOH 84 1176 1176 HOH HOH A . H 6 HOH 85 1177 1177 HOH HOH A . H 6 HOH 86 1179 1179 HOH HOH A . H 6 HOH 87 1181 1181 HOH HOH A . H 6 HOH 88 1182 1182 HOH HOH A . H 6 HOH 89 1184 1184 HOH HOH A . H 6 HOH 90 1186 1186 HOH HOH A . H 6 HOH 91 1187 1187 HOH HOH A . H 6 HOH 92 1190 1190 HOH HOH A . H 6 HOH 93 1191 1191 HOH HOH A . H 6 HOH 94 1192 1192 HOH HOH A . H 6 HOH 95 1193 1193 HOH HOH A . H 6 HOH 96 1199 1199 HOH HOH A . H 6 HOH 97 1200 1200 HOH HOH A . H 6 HOH 98 1202 1202 HOH HOH A . H 6 HOH 99 1204 1204 HOH HOH A . H 6 HOH 100 1205 1205 HOH HOH A . H 6 HOH 101 1206 1206 HOH HOH A . H 6 HOH 102 1207 1207 HOH HOH A . H 6 HOH 103 1208 1208 HOH HOH A . H 6 HOH 104 1211 1211 HOH HOH A . H 6 HOH 105 1212 1212 HOH HOH A . H 6 HOH 106 1213 1213 HOH HOH A . H 6 HOH 107 1214 1214 HOH HOH A . H 6 HOH 108 1216 1216 HOH HOH A . I 6 HOH 1 1004 1004 HOH HOH B . I 6 HOH 2 1005 1005 HOH HOH B . I 6 HOH 3 1008 1008 HOH HOH B . I 6 HOH 4 1013 1013 HOH HOH B . I 6 HOH 5 1014 1014 HOH HOH B . I 6 HOH 6 1015 1015 HOH HOH B . I 6 HOH 7 1016 1016 HOH HOH B . I 6 HOH 8 1021 1021 HOH HOH B . I 6 HOH 9 1023 1023 HOH HOH B . I 6 HOH 10 1024 1024 HOH HOH B . I 6 HOH 11 1025 1025 HOH HOH B . I 6 HOH 12 1028 1028 HOH HOH B . I 6 HOH 13 1030 1030 HOH HOH B . I 6 HOH 14 1031 1031 HOH HOH B . I 6 HOH 15 1032 1032 HOH HOH B . I 6 HOH 16 1033 1033 HOH HOH B . I 6 HOH 17 1034 1034 HOH HOH B . I 6 HOH 18 1035 1035 HOH HOH B . I 6 HOH 19 1037 1037 HOH HOH B . I 6 HOH 20 1038 1038 HOH HOH B . I 6 HOH 21 1040 1040 HOH HOH B . I 6 HOH 22 1043 1043 HOH HOH B . I 6 HOH 23 1044 1044 HOH HOH B . I 6 HOH 24 1046 1046 HOH HOH B . I 6 HOH 25 1049 1049 HOH HOH B . I 6 HOH 26 1051 1051 HOH HOH B . I 6 HOH 27 1052 1052 HOH HOH B . I 6 HOH 28 1054 1054 HOH HOH B . I 6 HOH 29 1056 1056 HOH HOH B . I 6 HOH 30 1059 1059 HOH HOH B . I 6 HOH 31 1060 1060 HOH HOH B . I 6 HOH 32 1062 1062 HOH HOH B . I 6 HOH 33 1063 1063 HOH HOH B . I 6 HOH 34 1065 1065 HOH HOH B . I 6 HOH 35 1066 1066 HOH HOH B . I 6 HOH 36 1067 1067 HOH HOH B . I 6 HOH 37 1069 1069 HOH HOH B . I 6 HOH 38 1070 1070 HOH HOH B . I 6 HOH 39 1071 1071 HOH HOH B . I 6 HOH 40 1073 1073 HOH HOH B . I 6 HOH 41 1074 1074 HOH HOH B . I 6 HOH 42 1077 1077 HOH HOH B . I 6 HOH 43 1078 1078 HOH HOH B . I 6 HOH 44 1079 1079 HOH HOH B . I 6 HOH 45 1083 1083 HOH HOH B . I 6 HOH 46 1084 1084 HOH HOH B . I 6 HOH 47 1085 1085 HOH HOH B . I 6 HOH 48 1090 1090 HOH HOH B . I 6 HOH 49 1091 1091 HOH HOH B . I 6 HOH 50 1092 1092 HOH HOH B . I 6 HOH 51 1094 1094 HOH HOH B . I 6 HOH 52 1096 1096 HOH HOH B . I 6 HOH 53 1097 1097 HOH HOH B . I 6 HOH 54 1102 1102 HOH HOH B . I 6 HOH 55 1103 1103 HOH HOH B . I 6 HOH 56 1105 1105 HOH HOH B . I 6 HOH 57 1106 1106 HOH HOH B . I 6 HOH 58 1107 1107 HOH HOH B . I 6 HOH 59 1109 1109 HOH HOH B . I 6 HOH 60 1114 1114 HOH HOH B . I 6 HOH 61 1116 1116 HOH HOH B . I 6 HOH 62 1117 1117 HOH HOH B . I 6 HOH 63 1121 1121 HOH HOH B . I 6 HOH 64 1123 1123 HOH HOH B . I 6 HOH 65 1124 1124 HOH HOH B . I 6 HOH 66 1128 1128 HOH HOH B . I 6 HOH 67 1130 1130 HOH HOH B . I 6 HOH 68 1131 1131 HOH HOH B . I 6 HOH 69 1133 1133 HOH HOH B . I 6 HOH 70 1134 1134 HOH HOH B . I 6 HOH 71 1135 1135 HOH HOH B . I 6 HOH 72 1139 1139 HOH HOH B . I 6 HOH 73 1140 1140 HOH HOH B . I 6 HOH 74 1144 1144 HOH HOH B . I 6 HOH 75 1145 1145 HOH HOH B . I 6 HOH 76 1146 1146 HOH HOH B . I 6 HOH 77 1148 1148 HOH HOH B . I 6 HOH 78 1149 1149 HOH HOH B . I 6 HOH 79 1150 1150 HOH HOH B . I 6 HOH 80 1151 1151 HOH HOH B . I 6 HOH 81 1152 1152 HOH HOH B . I 6 HOH 82 1158 1158 HOH HOH B . I 6 HOH 83 1159 1159 HOH HOH B . I 6 HOH 84 1160 1160 HOH HOH B . I 6 HOH 85 1162 1162 HOH HOH B . I 6 HOH 86 1163 1163 HOH HOH B . I 6 HOH 87 1165 1165 HOH HOH B . I 6 HOH 88 1166 1166 HOH HOH B . I 6 HOH 89 1169 1169 HOH HOH B . I 6 HOH 90 1170 1170 HOH HOH B . I 6 HOH 91 1174 1174 HOH HOH B . I 6 HOH 92 1175 1175 HOH HOH B . I 6 HOH 93 1178 1178 HOH HOH B . I 6 HOH 94 1180 1180 HOH HOH B . I 6 HOH 95 1183 1183 HOH HOH B . I 6 HOH 96 1185 1185 HOH HOH B . I 6 HOH 97 1188 1188 HOH HOH B . I 6 HOH 98 1189 1189 HOH HOH B . I 6 HOH 99 1194 1194 HOH HOH B . I 6 HOH 100 1195 1195 HOH HOH B . I 6 HOH 101 1196 1196 HOH HOH B . I 6 HOH 102 1197 1197 HOH HOH B . I 6 HOH 103 1198 1198 HOH HOH B . I 6 HOH 104 1201 1201 HOH HOH B . I 6 HOH 105 1203 1203 HOH HOH B . I 6 HOH 106 1209 1209 HOH HOH B . I 6 HOH 107 1210 1210 HOH HOH B . I 6 HOH 108 1215 1215 HOH HOH B . I 6 HOH 109 1217 1217 HOH HOH B . I 6 HOH 110 1218 1218 HOH HOH B . I 6 HOH 111 1219 1219 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL-97 refinement . ? 2 HKL-2000 'data collection' . ? 3 MAR345 'data collection' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 2NMY _cell.length_a 59.988 _cell.length_b 87.464 _cell.length_c 47.190 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2NMY _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2NMY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas 50.5 _exptl_crystal.density_Matthews 2.89 _exptl_crystal.density_percent_sol 57.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details 'SODIUM CHLORIDE 0.6M, DMSO 10%, SODIUM ACETATE BUFFER PH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 90.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-11-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0 1.0 2 1.0000 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 2NMY _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.10 _reflns.number_obs 95683 _reflns.number_all ? _reflns.percent_possible_obs 94.6 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.10 _reflns_shell.d_res_low 1.14 _reflns_shell.percent_possible_all 64.5 _reflns_shell.Rmerge_I_obs 0.36 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2 _reflns_shell.pdbx_redundancy 1.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2NMY _refine.ls_number_reflns_obs 90265 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.10 _refine.ls_percent_reflns_obs 89.2 _refine.ls_R_factor_obs 0.1491 _refine.ls_R_factor_all 0.1508 _refine.ls_R_factor_R_work 0.1491 _refine.ls_R_factor_R_free 0.1813 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 4520 _refine.ls_number_parameters 17522 _refine.ls_number_restraints 22494 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2NMY _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 28 _refine_analyze.occupancy_sum_hydrogen 1660.00 _refine_analyze.occupancy_sum_non_hydrogen 1779.00 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1508 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 57 _refine_hist.number_atoms_solvent 219 _refine_hist.number_atoms_total 1784 _refine_hist.d_res_high 1.10 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.045 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0293 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.080 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.107 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.077 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.055 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.110 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 2NMY _pdbx_refine.R_factor_all_no_cutoff 0.1508 _pdbx_refine.R_factor_obs_no_cutoff 0.1491 _pdbx_refine.free_R_factor_no_cutoff 0.1813 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 4520 _pdbx_refine.R_factor_all_4sig_cutoff 0.1297 _pdbx_refine.R_factor_obs_4sig_cutoff 0.128 _pdbx_refine.free_R_factor_4sig_cutoff 0.1597 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 3318 _pdbx_refine.number_reflns_obs_4sig_cutoff 65934 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 2NMY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 2NMY _struct.title 'Crystal structure analysis of HIV-1 protease mutant V82A with a inhibitor saquinavir' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NMY _struct_keywords.pdbx_keywords 'Hydrolase/HYDROLASE INHIBITOR' _struct_keywords.text 'HIV-1 PROTEASE, MUTANT, V82A, DIMER, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 2 ? H N N 6 ? I N N 6 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV1B5 _struct_ref.pdbx_db_accession P04587 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _struct_ref.pdbx_align_begin 500 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2NMY A 1 ? 99 ? P04587 500 ? 598 ? 1 99 2 1 2NMY B 1 ? 99 ? P04587 500 ? 598 ? 101 199 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2NMY LYS A 7 ? UNP P04587 GLN 506 'engineered mutation' 7 1 1 2NMY ILE A 33 ? UNP P04587 LEU 532 'engineered mutation' 33 2 1 2NMY ILE A 63 ? UNP P04587 LEU 562 'engineered mutation' 63 3 1 2NMY ALA A 67 ? UNP P04587 CYS 566 'engineered mutation' 67 4 1 2NMY ALA A 82 ? UNP P04587 VAL 581 'engineered mutation' 82 5 1 2NMY ALA A 95 ? UNP P04587 CYS 594 'engineered mutation' 95 6 2 2NMY LYS B 7 ? UNP P04587 GLN 506 'engineered mutation' 107 7 2 2NMY ILE B 33 ? UNP P04587 LEU 532 'engineered mutation' 133 8 2 2NMY ILE B 63 ? UNP P04587 LEU 562 'engineered mutation' 163 9 2 2NMY ALA B 67 ? UNP P04587 CYS 566 'engineered mutation' 167 10 2 2NMY ALA B 82 ? UNP P04587 VAL 581 'engineered mutation' 182 11 2 2NMY ALA B 95 ? UNP P04587 CYS 594 'engineered mutation' 195 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5730 ? 1 MORE -63 ? 1 'SSA (A^2)' 9780 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a dimer in the asymmetry unit.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLN A 92 ? GLY A 94 ? GLN A 92 GLY A 94 5 ? 3 HELX_P HELX_P3 3 GLY B 86 ? THR B 91 ? GLY B 186 THR B 191 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 60 O ? ? ? 1_555 D NA . NA ? ? A ASP 60 A NA 503 1_555 ? ? ? ? ? ? ? 2.451 ? ? metalc2 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 503 A HOH 1057 1_555 ? ? ? ? ? ? ? 2.410 ? ? metalc3 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 503 A HOH 1080 1_555 ? ? ? ? ? ? ? 2.460 ? ? metalc4 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 503 A HOH 1120 1_555 ? ? ? ? ? ? ? 2.234 ? ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 503 A HOH 1157 1_555 ? ? ? ? ? ? ? 2.147 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ASP 60 ? A ASP 60 ? 1_555 NA ? D NA . ? A NA 503 ? 1_555 O ? H HOH . ? A HOH 1057 ? 1_555 96.8 ? 2 O ? A ASP 60 ? A ASP 60 ? 1_555 NA ? D NA . ? A NA 503 ? 1_555 O ? H HOH . ? A HOH 1080 ? 1_555 75.0 ? 3 O ? H HOH . ? A HOH 1057 ? 1_555 NA ? D NA . ? A NA 503 ? 1_555 O ? H HOH . ? A HOH 1080 ? 1_555 168.5 ? 4 O ? A ASP 60 ? A ASP 60 ? 1_555 NA ? D NA . ? A NA 503 ? 1_555 O ? H HOH . ? A HOH 1120 ? 1_555 99.4 ? 5 O ? H HOH . ? A HOH 1057 ? 1_555 NA ? D NA . ? A NA 503 ? 1_555 O ? H HOH . ? A HOH 1120 ? 1_555 71.1 ? 6 O ? H HOH . ? A HOH 1080 ? 1_555 NA ? D NA . ? A NA 503 ? 1_555 O ? H HOH . ? A HOH 1120 ? 1_555 101.8 ? 7 O ? A ASP 60 ? A ASP 60 ? 1_555 NA ? D NA . ? A NA 503 ? 1_555 O ? H HOH . ? A HOH 1157 ? 1_555 101.4 ? 8 O ? H HOH . ? A HOH 1057 ? 1_555 NA ? D NA . ? A NA 503 ? 1_555 O ? H HOH . ? A HOH 1157 ? 1_555 100.2 ? 9 O ? H HOH . ? A HOH 1080 ? 1_555 NA ? D NA . ? A NA 503 ? 1_555 O ? H HOH . ? A HOH 1157 ? 1_555 89.5 ? 10 O ? H HOH . ? A HOH 1120 ? 1_555 NA ? D NA . ? A NA 503 ? 1_555 O ? H HOH . ? A HOH 1157 ? 1_555 158.3 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 196 ASN B 198 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 102 ILE B 103 B 1 LYS A 43 ? GLY A 49 ? LYS A 43 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? ILE A 33 ? VAL A 32 ILE A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 143 GLY B 149 C 2 GLY B 52 ? ILE B 66 ? GLY B 152 ILE B 166 C 3 HIS B 69 ? VAL B 77 ? HIS B 169 VAL B 177 C 4 VAL B 32 ? ILE B 33 ? VAL B 132 ILE B 133 C 5 ILE B 84 ? ILE B 85 ? ILE B 184 ILE B 185 C 6 GLN B 18 ? LEU B 24 ? GLN B 118 LEU B 124 C 7 LEU B 10 ? ILE B 15 ? LEU B 110 ILE B 115 C 8 GLY B 52 ? ILE B 66 ? GLY B 152 ILE B 166 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 197 A 2 3 O THR B 96 ? O THR B 196 N ASN A 98 ? N ASN A 98 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 103 B 1 2 N LYS A 43 ? N LYS A 43 O GLN A 58 ? O GLN A 58 B 2 3 N ILE A 66 ? N ILE A 66 O HIS A 69 ? O HIS A 69 B 3 4 O LEU A 76 ? O LEU A 76 N ILE A 33 ? N ILE A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 43 ? N LYS B 143 O GLN B 58 ? O GLN B 158 C 2 3 N ILE B 66 ? N ILE B 166 O HIS B 69 ? O HIS B 169 C 3 4 O LEU B 76 ? O LEU B 176 N ILE B 33 ? N ILE B 133 C 4 5 N VAL B 32 ? N VAL B 132 O ILE B 84 ? O ILE B 184 C 5 6 O ILE B 85 ? O ILE B 185 N LEU B 23 ? N LEU B 123 C 6 7 O LYS B 20 ? O LYS B 120 N ILE B 13 ? N ILE B 113 C 7 8 N LYS B 14 ? N LYS B 114 O GLU B 65 ? O GLU B 165 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CL 501 ? 1 'BINDING SITE FOR RESIDUE CL B 501' AC2 Software A CL 502 ? 4 'BINDING SITE FOR RESIDUE CL A 502' AC3 Software A NA 503 ? 5 'BINDING SITE FOR RESIDUE NA A 503' AC4 Software A SO4 504 ? 7 'BINDING SITE FOR RESIDUE SO4 A 504' AC5 Software A ROC 401 ? 23 'BINDING SITE FOR RESIDUE ROC A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 TRP B 6 ? TRP B 106 . ? 3_546 ? 2 AC2 4 THR A 74 ? THR A 74 . ? 1_555 ? 3 AC2 4 ASN A 88 ? ASN A 88 . ? 1_555 ? 4 AC2 4 HOH H . ? HOH A 1141 . ? 1_555 ? 5 AC2 4 ARG B 41 ? ARG B 141 . ? 3_556 ? 6 AC3 5 ASP A 60 ? ASP A 60 . ? 1_555 ? 7 AC3 5 HOH H . ? HOH A 1057 . ? 1_555 ? 8 AC3 5 HOH H . ? HOH A 1080 . ? 1_555 ? 9 AC3 5 HOH H . ? HOH A 1120 . ? 1_555 ? 10 AC3 5 HOH H . ? HOH A 1157 . ? 1_555 ? 11 AC4 7 MET A 46 ? MET A 46 . ? 1_555 ? 12 AC4 7 PHE A 53 ? PHE A 53 . ? 1_555 ? 13 AC4 7 HOH H . ? HOH A 1171 . ? 1_555 ? 14 AC4 7 HOH H . ? HOH A 1213 . ? 1_555 ? 15 AC4 7 ILE B 72 ? ILE B 172 . ? 4_556 ? 16 AC4 7 GLY B 73 ? GLY B 173 . ? 4_556 ? 17 AC4 7 GLN B 92 ? GLN B 192 . ? 4_556 ? 18 AC5 23 ARG A 8 ? ARG A 8 . ? 1_555 ? 19 AC5 23 ASP A 25 ? ASP A 25 . ? 1_555 ? 20 AC5 23 GLY A 27 ? GLY A 27 . ? 1_555 ? 21 AC5 23 ASP A 29 ? ASP A 29 . ? 1_555 ? 22 AC5 23 ASP A 30 ? ASP A 30 . ? 1_555 ? 23 AC5 23 GLY A 48 ? GLY A 48 . ? 1_555 ? 24 AC5 23 GLY A 49 ? GLY A 49 . ? 1_555 ? 25 AC5 23 ILE A 50 ? ILE A 50 . ? 1_555 ? 26 AC5 23 ILE A 84 ? ILE A 84 . ? 1_555 ? 27 AC5 23 HOH H . ? HOH A 1006 . ? 1_555 ? 28 AC5 23 HOH H . ? HOH A 1018 . ? 1_555 ? 29 AC5 23 HOH H . ? HOH A 1127 . ? 1_555 ? 30 AC5 23 ARG B 8 ? ARG B 108 . ? 1_555 ? 31 AC5 23 ASP B 25 ? ASP B 125 . ? 1_555 ? 32 AC5 23 GLY B 27 ? GLY B 127 . ? 1_555 ? 33 AC5 23 ASP B 29 ? ASP B 129 . ? 1_555 ? 34 AC5 23 ASP B 30 ? ASP B 130 . ? 1_555 ? 35 AC5 23 GLY B 48 ? GLY B 148 . ? 1_555 ? 36 AC5 23 GLY B 49 ? GLY B 149 . ? 1_555 ? 37 AC5 23 ILE B 50 ? ILE B 150 . ? 1_555 ? 38 AC5 23 PRO B 81 ? PRO B 181 . ? 1_555 ? 39 AC5 23 ILE B 84 ? ILE B 184 . ? 1_555 ? 40 AC5 23 HOH I . ? HOH B 1060 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG A ARG 41 ? B CD A ARG 41 ? B NE A ARG 41 ? B 125.66 111.80 13.86 2.10 N 2 1 CD A ARG 41 ? A NE A ARG 41 ? A CZ A ARG 41 ? A 132.81 123.60 9.21 1.40 N 3 1 NE A ARG 41 ? B CZ A ARG 41 ? B NH1 A ARG 41 ? B 126.62 120.30 6.32 0.50 N 4 1 CA A ILE 50 ? B C A ILE 50 ? B N A GLY 51 ? B 129.99 116.20 13.79 2.00 Y 5 1 CD A ARG 57 ? ? NE A ARG 57 ? ? CZ A ARG 57 ? ? 138.64 123.60 15.04 1.40 N 6 1 NE A ARG 57 ? ? CZ A ARG 57 ? ? NH1 A ARG 57 ? ? 116.04 120.30 -4.26 0.50 N 7 1 CB A ASN 98 ? ? CG A ASN 98 ? ? OD1 A ASN 98 ? ? 139.96 121.60 18.36 2.00 N 8 1 OE1 B GLU 134 ? ? CD B GLU 134 ? ? OE2 B GLU 134 ? ? 115.13 123.30 -8.17 1.20 N 9 1 CD B LYS 145 ? ? CE B LYS 145 ? ? NZ B LYS 145 ? ? 128.18 111.70 16.48 2.30 N 10 1 C B ILE 150 ? B N B GLY 151 ? B CA B GLY 151 ? ? 103.96 122.30 -18.34 2.10 Y 11 1 NE B ARG 187 ? ? CZ B ARG 187 ? ? NH1 B ARG 187 ? ? 123.52 120.30 3.22 0.50 N # _pdbx_molecule_features.prd_id PRD_000454 _pdbx_molecule_features.name Saquinavir _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000454 _pdbx_molecule.asym_id F # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 1216 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_entry_details.nonpolymer_details ;THE INHIBITOR ROC IS A HYDROXYETHYLAMINE CONTAINING TRANSITION STATE MIMETIC. ; _pdbx_entry_details.entry_id 2NMY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 NA NA NA N N 251 PHE N N N N 252 PHE CA C N S 253 PHE C C N N 254 PHE O O N N 255 PHE CB C N N 256 PHE CG C Y N 257 PHE CD1 C Y N 258 PHE CD2 C Y N 259 PHE CE1 C Y N 260 PHE CE2 C Y N 261 PHE CZ C Y N 262 PHE OXT O N N 263 PHE H H N N 264 PHE H2 H N N 265 PHE HA H N N 266 PHE HB2 H N N 267 PHE HB3 H N N 268 PHE HD1 H N N 269 PHE HD2 H N N 270 PHE HE1 H N N 271 PHE HE2 H N N 272 PHE HZ H N N 273 PHE HXT H N N 274 PRO N N N N 275 PRO CA C N S 276 PRO C C N N 277 PRO O O N N 278 PRO CB C N N 279 PRO CG C N N 280 PRO CD C N N 281 PRO OXT O N N 282 PRO H H N N 283 PRO HA H N N 284 PRO HB2 H N N 285 PRO HB3 H N N 286 PRO HG2 H N N 287 PRO HG3 H N N 288 PRO HD2 H N N 289 PRO HD3 H N N 290 PRO HXT H N N 291 ROC C C N N 292 ROC O O N N 293 ROC N1 N Y N 294 ROC C2 C Y N 295 ROC C3 C Y N 296 ROC C4 C Y N 297 ROC C5 C Y N 298 ROC C6 C Y N 299 ROC C7 C Y N 300 ROC C8 C Y N 301 ROC C4A C Y N 302 ROC C8A C Y N 303 ROC N N N N 304 ROC CA C N S 305 ROC C1 C N N 306 ROC O1 O N N 307 ROC CB C N N 308 ROC CG C N N 309 ROC OD1 O N N 310 ROC ND2 N N N 311 ROC C9 C N R 312 ROC O2 O N N 313 ROC CA1 C N S 314 ROC N2 N N N 315 ROC CB1 C N N 316 ROC CG1 C Y N 317 ROC CD1 C Y N 318 ROC CD2 C Y N 319 ROC CE1 C Y N 320 ROC CE2 C Y N 321 ROC CZ C Y N 322 ROC N11 N N N 323 ROC CM C N N 324 ROC C21 C N S 325 ROC CC C N N 326 ROC O3 O N N 327 ROC C31 C N N 328 ROC C3A C N S 329 ROC C41 C N N 330 ROC C51 C N N 331 ROC C61 C N N 332 ROC C71 C N N 333 ROC C7A C N S 334 ROC C81 C N N 335 ROC N3 N N N 336 ROC CD C N N 337 ROC C11 C N N 338 ROC C22 C N N 339 ROC C32 C N N 340 ROC H3 H N N 341 ROC H4 H N N 342 ROC H5 H N N 343 ROC H6 H N N 344 ROC H7 H N N 345 ROC H8 H N N 346 ROC H H N N 347 ROC HA H N N 348 ROC HB2 H N N 349 ROC HB3 H N N 350 ROC HD21 H N N 351 ROC HD22 H N N 352 ROC HC H N N 353 ROC HO H N N 354 ROC HA1 H N N 355 ROC H1 H N N 356 ROC HB21 H N N 357 ROC HB31 H N N 358 ROC HD1 H N N 359 ROC HD2 H N N 360 ROC HE1 H N N 361 ROC HE2 H N N 362 ROC HZ H N N 363 ROC HM1 H N N 364 ROC HM2 H N N 365 ROC H2 H N N 366 ROC H31 H N N 367 ROC H32 H N N 368 ROC H3A H N N 369 ROC H41 H N N 370 ROC H42 H N N 371 ROC H51 H N N 372 ROC H52 H N N 373 ROC H61 H N N 374 ROC H62 H N N 375 ROC H71 H N N 376 ROC H72 H N N 377 ROC H7A H N N 378 ROC H81 H N N 379 ROC H82 H N N 380 ROC HN1 H N N 381 ROC H11 H N N 382 ROC H12 H N N 383 ROC H13 H N N 384 ROC H21 H N N 385 ROC H22 H N N 386 ROC H23 H N N 387 ROC H311 H N N 388 ROC H321 H N N 389 ROC H33 H N N 390 SER N N N N 391 SER CA C N S 392 SER C C N N 393 SER O O N N 394 SER CB C N N 395 SER OG O N N 396 SER OXT O N N 397 SER H H N N 398 SER H2 H N N 399 SER HA H N N 400 SER HB2 H N N 401 SER HB3 H N N 402 SER HG H N N 403 SER HXT H N N 404 SO4 S S N N 405 SO4 O1 O N N 406 SO4 O2 O N N 407 SO4 O3 O N N 408 SO4 O4 O N N 409 THR N N N N 410 THR CA C N S 411 THR C C N N 412 THR O O N N 413 THR CB C N R 414 THR OG1 O N N 415 THR CG2 C N N 416 THR OXT O N N 417 THR H H N N 418 THR H2 H N N 419 THR HA H N N 420 THR HB H N N 421 THR HG1 H N N 422 THR HG21 H N N 423 THR HG22 H N N 424 THR HG23 H N N 425 THR HXT H N N 426 TRP N N N N 427 TRP CA C N S 428 TRP C C N N 429 TRP O O N N 430 TRP CB C N N 431 TRP CG C Y N 432 TRP CD1 C Y N 433 TRP CD2 C Y N 434 TRP NE1 N Y N 435 TRP CE2 C Y N 436 TRP CE3 C Y N 437 TRP CZ2 C Y N 438 TRP CZ3 C Y N 439 TRP CH2 C Y N 440 TRP OXT O N N 441 TRP H H N N 442 TRP H2 H N N 443 TRP HA H N N 444 TRP HB2 H N N 445 TRP HB3 H N N 446 TRP HD1 H N N 447 TRP HE1 H N N 448 TRP HE3 H N N 449 TRP HZ2 H N N 450 TRP HZ3 H N N 451 TRP HH2 H N N 452 TRP HXT H N N 453 TYR N N N N 454 TYR CA C N S 455 TYR C C N N 456 TYR O O N N 457 TYR CB C N N 458 TYR CG C Y N 459 TYR CD1 C Y N 460 TYR CD2 C Y N 461 TYR CE1 C Y N 462 TYR CE2 C Y N 463 TYR CZ C Y N 464 TYR OH O N N 465 TYR OXT O N N 466 TYR H H N N 467 TYR H2 H N N 468 TYR HA H N N 469 TYR HB2 H N N 470 TYR HB3 H N N 471 TYR HD1 H N N 472 TYR HD2 H N N 473 TYR HE1 H N N 474 TYR HE2 H N N 475 TYR HH H N N 476 TYR HXT H N N 477 VAL N N N N 478 VAL CA C N S 479 VAL C C N N 480 VAL O O N N 481 VAL CB C N N 482 VAL CG1 C N N 483 VAL CG2 C N N 484 VAL OXT O N N 485 VAL H H N N 486 VAL H2 H N N 487 VAL HA H N N 488 VAL HB H N N 489 VAL HG11 H N N 490 VAL HG12 H N N 491 VAL HG13 H N N 492 VAL HG21 H N N 493 VAL HG22 H N N 494 VAL HG23 H N N 495 VAL HXT H N N 496 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 ROC O C doub N N 277 ROC C C2 sing N N 278 ROC N1 C2 doub Y N 279 ROC N1 C8A sing Y N 280 ROC C2 C3 sing Y N 281 ROC C3 C4 doub Y N 282 ROC C3 H3 sing N N 283 ROC C4 C4A sing Y N 284 ROC C4 H4 sing N N 285 ROC C4A C5 doub Y N 286 ROC C4A C8A sing Y N 287 ROC C5 C6 sing Y N 288 ROC C5 H5 sing N N 289 ROC C6 C7 doub Y N 290 ROC C6 H6 sing N N 291 ROC C7 C8 sing Y N 292 ROC C7 H7 sing N N 293 ROC C8 C8A doub Y N 294 ROC C8 H8 sing N N 295 ROC N CA sing N N 296 ROC N H sing N N 297 ROC CA C1 sing N N 298 ROC CA CB sing N N 299 ROC CA HA sing N N 300 ROC C1 O1 doub N N 301 ROC CB CG sing N N 302 ROC CB HB2 sing N N 303 ROC CB HB3 sing N N 304 ROC CG OD1 doub N N 305 ROC CG ND2 sing N N 306 ROC ND2 HD21 sing N N 307 ROC ND2 HD22 sing N N 308 ROC C9 O2 sing N N 309 ROC C9 CA1 sing N N 310 ROC C9 HC sing N N 311 ROC O2 HO sing N N 312 ROC CA1 N2 sing N N 313 ROC CA1 CB1 sing N N 314 ROC CA1 HA1 sing N N 315 ROC N2 H1 sing N N 316 ROC CB1 CG1 sing N N 317 ROC CB1 HB21 sing N N 318 ROC CB1 HB31 sing N N 319 ROC CG1 CD1 doub Y N 320 ROC CG1 CD2 sing Y N 321 ROC CD1 CE1 sing Y N 322 ROC CD1 HD1 sing N N 323 ROC CD2 CE2 doub Y N 324 ROC CD2 HD2 sing N N 325 ROC CE1 CZ doub Y N 326 ROC CE1 HE1 sing N N 327 ROC CE2 CZ sing Y N 328 ROC CE2 HE2 sing N N 329 ROC CZ HZ sing N N 330 ROC N11 CM sing N N 331 ROC N11 C21 sing N N 332 ROC N11 C81 sing N N 333 ROC CM HM1 sing N N 334 ROC CM HM2 sing N N 335 ROC C21 CC sing N N 336 ROC C21 C31 sing N N 337 ROC C21 H2 sing N N 338 ROC CC O3 doub N N 339 ROC C31 C3A sing N N 340 ROC C31 H31 sing N N 341 ROC C31 H32 sing N N 342 ROC C3A C41 sing N N 343 ROC C3A C7A sing N N 344 ROC C3A H3A sing N N 345 ROC C41 C51 sing N N 346 ROC C41 H41 sing N N 347 ROC C41 H42 sing N N 348 ROC C51 C61 sing N N 349 ROC C51 H51 sing N N 350 ROC C51 H52 sing N N 351 ROC C61 C71 sing N N 352 ROC C61 H61 sing N N 353 ROC C61 H62 sing N N 354 ROC C71 C7A sing N N 355 ROC C71 H71 sing N N 356 ROC C71 H72 sing N N 357 ROC C7A C81 sing N N 358 ROC C7A H7A sing N N 359 ROC C81 H81 sing N N 360 ROC C81 H82 sing N N 361 ROC N3 CD sing N N 362 ROC N3 HN1 sing N N 363 ROC CD C11 sing N N 364 ROC CD C22 sing N N 365 ROC CD C32 sing N N 366 ROC C11 H11 sing N N 367 ROC C11 H12 sing N N 368 ROC C11 H13 sing N N 369 ROC C22 H21 sing N N 370 ROC C22 H22 sing N N 371 ROC C22 H23 sing N N 372 ROC C32 H311 sing N N 373 ROC C32 H321 sing N N 374 ROC C32 H33 sing N N 375 ROC C N sing N N 376 ROC C1 N2 sing N N 377 ROC C9 CM sing N N 378 ROC CC N3 sing N N 379 SER N CA sing N N 380 SER N H sing N N 381 SER N H2 sing N N 382 SER CA C sing N N 383 SER CA CB sing N N 384 SER CA HA sing N N 385 SER C O doub N N 386 SER C OXT sing N N 387 SER CB OG sing N N 388 SER CB HB2 sing N N 389 SER CB HB3 sing N N 390 SER OG HG sing N N 391 SER OXT HXT sing N N 392 SO4 S O1 doub N N 393 SO4 S O2 doub N N 394 SO4 S O3 sing N N 395 SO4 S O4 sing N N 396 THR N CA sing N N 397 THR N H sing N N 398 THR N H2 sing N N 399 THR CA C sing N N 400 THR CA CB sing N N 401 THR CA HA sing N N 402 THR C O doub N N 403 THR C OXT sing N N 404 THR CB OG1 sing N N 405 THR CB CG2 sing N N 406 THR CB HB sing N N 407 THR OG1 HG1 sing N N 408 THR CG2 HG21 sing N N 409 THR CG2 HG22 sing N N 410 THR CG2 HG23 sing N N 411 THR OXT HXT sing N N 412 TRP N CA sing N N 413 TRP N H sing N N 414 TRP N H2 sing N N 415 TRP CA C sing N N 416 TRP CA CB sing N N 417 TRP CA HA sing N N 418 TRP C O doub N N 419 TRP C OXT sing N N 420 TRP CB CG sing N N 421 TRP CB HB2 sing N N 422 TRP CB HB3 sing N N 423 TRP CG CD1 doub Y N 424 TRP CG CD2 sing Y N 425 TRP CD1 NE1 sing Y N 426 TRP CD1 HD1 sing N N 427 TRP CD2 CE2 doub Y N 428 TRP CD2 CE3 sing Y N 429 TRP NE1 CE2 sing Y N 430 TRP NE1 HE1 sing N N 431 TRP CE2 CZ2 sing Y N 432 TRP CE3 CZ3 doub Y N 433 TRP CE3 HE3 sing N N 434 TRP CZ2 CH2 doub Y N 435 TRP CZ2 HZ2 sing N N 436 TRP CZ3 CH2 sing Y N 437 TRP CZ3 HZ3 sing N N 438 TRP CH2 HH2 sing N N 439 TRP OXT HXT sing N N 440 TYR N CA sing N N 441 TYR N H sing N N 442 TYR N H2 sing N N 443 TYR CA C sing N N 444 TYR CA CB sing N N 445 TYR CA HA sing N N 446 TYR C O doub N N 447 TYR C OXT sing N N 448 TYR CB CG sing N N 449 TYR CB HB2 sing N N 450 TYR CB HB3 sing N N 451 TYR CG CD1 doub Y N 452 TYR CG CD2 sing Y N 453 TYR CD1 CE1 sing Y N 454 TYR CD1 HD1 sing N N 455 TYR CD2 CE2 doub Y N 456 TYR CD2 HD2 sing N N 457 TYR CE1 CZ doub Y N 458 TYR CE1 HE1 sing N N 459 TYR CE2 CZ sing Y N 460 TYR CE2 HE2 sing N N 461 TYR CZ OH sing N N 462 TYR OH HH sing N N 463 TYR OXT HXT sing N N 464 VAL N CA sing N N 465 VAL N H sing N N 466 VAL N H2 sing N N 467 VAL CA C sing N N 468 VAL CA CB sing N N 469 VAL CA HA sing N N 470 VAL C O doub N N 471 VAL C OXT sing N N 472 VAL CB CG1 sing N N 473 VAL CB CG2 sing N N 474 VAL CB HB sing N N 475 VAL CG1 HG11 sing N N 476 VAL CG1 HG12 sing N N 477 VAL CG1 HG13 sing N N 478 VAL CG2 HG21 sing N N 479 VAL CG2 HG22 sing N N 480 VAL CG2 HG23 sing N N 481 VAL OXT HXT sing N N 482 # _atom_sites.entry_id 2NMY _atom_sites.fract_transf_matrix[1][1] 0.016670 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011433 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021191 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N NA O S # loop_