HEADER RIBOSOME 26-OCT-06 2NOQ TITLE STRUCTURE OF RIBOSOME-BOUND CRICKET PARALYSIS VIRUS IRES RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRPV IRES; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 18S RIBOSOMAL RNA; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RESIDUES 500-545; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 18S RIBOSOMAL RNA; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: RESIDUES 1050-1062; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: 18S RIBOSOMAL RNA; COMPND 15 CHAIN: D; COMPND 16 FRAGMENT: RESIDUES 1194-1208; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: 25S RIBOSOMAL RNA; COMPND 19 CHAIN: E; COMPND 20 SYNONYM: S2, YS8, RP14; COMPND 21 MOL_ID: 6; COMPND 22 MOLECULE: 40S RIBOSOMAL PROTEIN S5; COMPND 23 CHAIN: F; COMPND 24 SYNONYM: L10A; COMPND 25 MOL_ID: 7; COMPND 26 MOLECULE: 60S RIBOSOMAL PROTEIN L1; COMPND 27 CHAIN: G; COMPND 28 SYNONYM: L16, YL16, 39B, RP39; COMPND 29 MOL_ID: 8; COMPND 30 MOLECULE: 60S RIBOSOMAL PROTEIN L11-B; COMPND 31 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS CHAIN, CRPV-IRES-RNA [NCBI ACCESSION: BD177018], SOURCE 4 WAS SYNTHESIZED BY IN-VITRO TRANSCRIPTION OF A PLASMID TEMPLATE; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 15 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 16 ORGANISM_TAXID: 4932; SOURCE 17 MOL_ID: 5; SOURCE 18 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 19 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 20 ORGANISM_TAXID: 4932; SOURCE 21 MOL_ID: 6; SOURCE 22 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 23 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 24 ORGANISM_TAXID: 4932; SOURCE 25 MOL_ID: 7; SOURCE 26 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 27 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 28 ORGANISM_TAXID: 4932; SOURCE 29 MOL_ID: 8; SOURCE 30 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 31 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 32 ORGANISM_TAXID: 4932 KEYWDS IRES RNA, RIBOSOME, TRANSLATION, INTERNAL INITIATION EXPDTA ELECTRON MICROSCOPY AUTHOR M.SCHULER,S.R.CONNELL,A.LESCOUTE,J.GIESEBRECHT,M.DABROWSKI, AUTHOR 2 B.SCHROEER,T.MIELKE,P.A.PENCZEK,E.WESTHOF,C.M.T.SPAHN REVDAT 5 27-DEC-23 2NOQ 1 REMARK REVDAT 4 15-FEB-12 2NOQ 1 ATOM VERSN REVDAT 3 24-FEB-09 2NOQ 1 VERSN REVDAT 2 23-JAN-07 2NOQ 1 JRNL REVDAT 1 21-NOV-06 2NOQ 0 JRNL AUTH M.SCHULER,S.R.CONNELL,A.LESCOUTE,J.GIESEBRECHT,M.DABROWSKI, JRNL AUTH 2 B.SCHROEER,T.MIELKE,P.A.PENCZEK,E.WESTHOF,C.M.SPAHN JRNL TITL STRUCTURE OF THE RIBOSOME-BOUND CRICKET PARALYSIS VIRUS IRES JRNL TITL 2 RNA. JRNL REF NAT.STRUCT.MOL.BIOL. V. 13 1092 2006 JRNL REFN ISSN 1545-9993 JRNL PMID 17115051 JRNL DOI 10.1038/NSMB1177 REMARK 2 REMARK 2 RESOLUTION. 7.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1S1I REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.220 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.300 REMARK 3 NUMBER OF PARTICLES : 73313 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 2NOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000040120. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : YEAST 80S BOUND BY CRICKET REMARK 245 PARALYSIS VIRUS IRES RNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : QUANTIFOIL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : 20 MM HEPES PH 7.6, 100 MM KAC, REMARK 245 100 MM KCL, 5 MM MGCL2, 1 MM REMARK 245 DTT, 1MM AEBSF, ROCHE COMPLETE REMARK 245 PROTEASE INHIBITOR REMARK 245 PH : 7.60 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI POLARA 300 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 100.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3900.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 39000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' C E 2184 N LEU G 163 0.35 REMARK 500 C4' C E 2183 NE2 GLN G 35 0.39 REMARK 500 O2 C E 2184 CG2 VAL G 162 0.44 REMARK 500 O2' A A 161 N1 G B 530 0.44 REMARK 500 N9 A A 13 CA PRO G 121 0.49 REMARK 500 NZ LYS G 54 CA ASP G 150 0.54 REMARK 500 CD LYS G 54 CG ASP G 150 0.57 REMARK 500 O2' U A 160 O2' G B 530 0.63 REMARK 500 O2' U A 193 O5' A B 535 0.63 REMARK 500 O4' U A 160 OP2 U B 531 0.63 REMARK 500 O5' U A 11 CE LYS G 118 0.64 REMARK 500 O3' C A 189 C6 U D 1196 0.69 REMARK 500 CD LYS G 54 OD1 ASP G 150 0.72 REMARK 500 C3' G A 12 CD1 ILE G 117 0.72 REMARK 500 OP1 C E 2185 CD1 LEU G 163 0.75 REMARK 500 OP1 C E 2170 NZ LYS G 105 0.76 REMARK 500 C1' C E 2184 CG1 VAL G 162 0.78 REMARK 500 C1' G E 2154 NZ LYS G 161 0.79 REMARK 500 OD1 ASN G 62 CZ ARG G 152 0.80 REMARK 500 C1' A A 13 N PRO G 121 0.80 REMARK 500 O4' G E 2154 NZ LYS G 161 0.82 REMARK 500 C8 A A 13 CB PRO G 121 0.86 REMARK 500 CA ASN G 62 CD ARG G 152 0.87 REMARK 500 N1 U A 193 O2' A B 533 0.87 REMARK 500 O3' C A 189 C5 U D 1196 0.87 REMARK 500 C2' A A 13 N ARG G 122 0.88 REMARK 500 C1' C A 192 OP1 G B 529 0.89 REMARK 500 O2' U A 160 C2' G B 530 0.90 REMARK 500 P U A 14 CG ARG G 122 0.90 REMARK 500 N3 U A 193 O3' A B 533 0.91 REMARK 500 C5 U A 193 OP1 U B 534 0.92 REMARK 500 OD1 ASN G 62 NH2 ARG G 152 0.94 REMARK 500 C5' U A 193 C8 A B 535 0.96 REMARK 500 O5' A E 2176 CE LYS G 130 0.98 REMARK 500 C4 U A 193 OP1 U B 534 1.00 REMARK 500 O4' A A 13 N PRO G 121 1.02 REMARK 500 C2 A A 13 N GLY G 125 1.03 REMARK 500 P C E 2170 NZ LYS G 105 1.04 REMARK 500 OP1 A A 13 CG LYS G 118 1.05 REMARK 500 C5' A E 2176 CE LYS G 130 1.05 REMARK 500 C5' U A 14 CA ARG G 122 1.06 REMARK 500 O ASP G 150 C SER G 153 1.06 REMARK 500 N1 C E 2184 CG1 VAL G 162 1.06 REMARK 500 C1' A A 13 CA PRO G 121 1.06 REMARK 500 C1' U E 2155 CE LYS G 160 1.07 REMARK 500 O2' A A 161 C6 G B 530 1.08 REMARK 500 OP2 G E 2172 CD LYS G 98 1.08 REMARK 500 O5' G E 2172 CG LYS G 98 1.08 REMARK 500 O5' U A 14 CD ARG G 122 1.08 REMARK 500 O2' U A 193 P A B 535 1.08 REMARK 500 REMARK 500 THIS ENTRY HAS 388 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U A 75 P U A 75 O5' 0.109 REMARK 500 G E2138 P G E2138 OP3 -0.084 REMARK 500 G E2160 O3' C E2161 P -0.384 REMARK 500 G E2166 O3' C E2167 P -0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A A 4 N1 - C2 - N3 ANGL. DEV. = -3.0 DEGREES REMARK 500 A A 5 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 A A 6 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 A A 7 N1 - C2 - N3 ANGL. DEV. = -3.0 DEGREES REMARK 500 A A 8 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 U A 9 C2 - N3 - C4 ANGL. DEV. = -4.6 DEGREES REMARK 500 U A 9 N3 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 U A 11 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 U A 11 C2 - N3 - C4 ANGL. DEV. = -4.7 DEGREES REMARK 500 U A 11 N3 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 A A 13 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 U A 14 C2 - N3 - C4 ANGL. DEV. = -4.6 DEGREES REMARK 500 U A 14 N3 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 U A 16 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 U A 16 C2 - N3 - C4 ANGL. DEV. = -4.7 DEGREES REMARK 500 U A 16 N3 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 U A 17 C2 - N3 - C4 ANGL. DEV. = -4.7 DEGREES REMARK 500 U A 17 N3 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 G A 18 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 U A 20 C2 - N3 - C4 ANGL. DEV. = -4.7 DEGREES REMARK 500 U A 20 N3 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 U A 21 C2 - N3 - C4 ANGL. DEV. = -4.7 DEGREES REMARK 500 U A 21 N3 - C4 - C5 ANGL. DEV. = 4.7 DEGREES REMARK 500 G A 22 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 U A 23 C2 - N3 - C4 ANGL. DEV. = -4.7 DEGREES REMARK 500 U A 23 N3 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 A A 24 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 A A 25 N1 - C2 - N3 ANGL. DEV. = -3.0 DEGREES REMARK 500 A A 26 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 U A 27 C2 - N3 - C4 ANGL. DEV. = -4.6 DEGREES REMARK 500 U A 27 N3 - C4 - C5 ANGL. DEV. = 4.5 DEGREES REMARK 500 A A 28 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 A A 30 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 A A 31 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 A A 31 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 U A 32 C2 - N3 - C4 ANGL. DEV. = -4.6 DEGREES REMARK 500 U A 32 N3 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 U A 32 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 U A 33 C2 - N3 - C4 ANGL. DEV. = -4.7 DEGREES REMARK 500 U A 33 N3 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 U A 34 C2 - N3 - C4 ANGL. DEV. = -4.7 DEGREES REMARK 500 U A 34 N3 - C4 - C5 ANGL. DEV. = 4.7 DEGREES REMARK 500 U A 34 C3' - O3' - P ANGL. DEV. = 11.0 DEGREES REMARK 500 U A 35 C2 - N3 - C4 ANGL. DEV. = -4.7 DEGREES REMARK 500 U A 35 N3 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 G A 36 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 A A 37 N1 - C2 - N3 ANGL. DEV. = -3.0 DEGREES REMARK 500 G A 38 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 A A 39 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 G A 40 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 277 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA F 153 163.85 62.61 REMARK 500 ILE F 186 162.00 77.43 REMARK 500 THR F 188 -154.29 -103.45 REMARK 500 LYS F 202 -21.13 78.35 REMARK 500 SER F 205 68.55 -107.05 REMARK 500 SER F 207 166.15 99.05 REMARK 500 LYS F 221 -11.64 69.67 REMARK 500 ASN F 223 54.44 -101.96 REMARK 500 GLU G 22 -51.27 140.79 REMARK 500 ASP G 46 36.41 -74.54 REMARK 500 CYS G 58 160.92 71.22 REMARK 500 ARG G 60 -33.19 89.40 REMARK 500 ALA G 71 146.35 -37.89 REMARK 500 PHE G 72 -76.04 91.00 REMARK 500 ASN G 141 43.83 -106.37 REMARK 500 LYS G 160 -164.93 64.78 REMARK 500 ASN G 197 -143.20 83.88 REMARK 500 LYS H 15 122.42 -39.83 REMARK 500 VAL H 17 133.05 -177.52 REMARK 500 ASN H 19 -179.00 -170.71 REMARK 500 THR H 30 106.98 -58.22 REMARK 500 ALA H 32 -25.16 76.87 REMARK 500 LEU H 36 -15.60 83.69 REMARK 500 SER H 40 -19.69 79.51 REMARK 500 ALA H 49 -167.33 -126.62 REMARK 500 ARG H 50 83.32 68.90 REMARK 500 PHE H 56 -164.47 -113.88 REMARK 500 ARG H 60 -87.41 -89.68 REMARK 500 ILE H 64 128.38 -11.93 REMARK 500 VAL H 66 144.91 -22.11 REMARK 500 HIS H 67 168.64 173.38 REMARK 500 VAL H 68 -177.91 114.09 REMARK 500 THR H 69 -140.10 -179.71 REMARK 500 VAL H 70 -134.74 -179.33 REMARK 500 ARG H 71 -133.07 162.77 REMARK 500 ALA H 75 75.80 -105.76 REMARK 500 ILE H 78 134.62 130.71 REMARK 500 LYS H 84 19.77 80.82 REMARK 500 VAL H 85 -154.00 -111.74 REMARK 500 ASP H 92 -117.93 156.76 REMARK 500 THR H 98 -33.52 152.00 REMARK 500 PHE H 103 -157.96 -157.17 REMARK 500 ASP H 116 43.82 74.63 REMARK 500 ASP H 125 96.57 0.96 REMARK 500 PRO H 133 -132.04 -118.30 REMARK 500 ALA H 135 102.53 -29.96 REMARK 500 ARG H 136 -5.84 -172.35 REMARK 500 ARG H 142 -157.01 150.06 REMARK 500 SER H 150 -75.68 -136.97 REMARK 500 TRP H 161 -106.79 65.24 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG H 132 PRO H 133 -110.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 C B 528 0.08 SIDE CHAIN REMARK 500 G B 529 0.05 SIDE CHAIN REMARK 500 A E2150 0.12 SIDE CHAIN REMARK 500 G E2162 0.05 SIDE CHAIN REMARK 500 G E2174 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-1285 RELATED DB: EMDB DBREF 2NOQ A 4 193 GB 8895506 AF218039 6030 6219 DBREF 2NOQ F 75 224 UNP P26783 RS5_YEAST 75 224 DBREF 2NOQ G 4 216 UNP P53030 RL1_YEAST 4 216 DBREF 2NOQ H 6 170 UNP Q3E757 RL11B_YEAST 6 170 DBREF 2NOQ B 500 545 PDB 2NOQ 2NOQ 500 545 DBREF 2NOQ C 1050 1062 PDB 2NOQ 2NOQ 1050 1062 DBREF 2NOQ D 1194 1208 PDB 2NOQ 2NOQ 1194 1208 DBREF 2NOQ E 2138 2190 PDB 2NOQ 2NOQ 2138 2190 SEQRES 1 A 190 A A A A A U G U G A U C U SEQRES 2 A 190 U G C U U G U A A A U A C SEQRES 3 A 190 A A U U U U G A G A G G U SEQRES 4 A 190 U A A U A A A U U A C A A SEQRES 5 A 190 G U A G U G C U A U U U U SEQRES 6 A 190 U G U A U U U A G G U U A SEQRES 7 A 190 G C U A U U U A G C U U U SEQRES 8 A 190 A C G U U C C A G G A U G SEQRES 9 A 190 C C U A G U G G C A G C C SEQRES 10 A 190 C C A C A A U A U C C A G SEQRES 11 A 190 G A A G C C C U C U C U G SEQRES 12 A 190 C G G U U U U U C A G A U SEQRES 13 A 190 U A G G U A G U C G A A A SEQRES 14 A 190 A A C C U A A G A A A U U SEQRES 15 A 190 U A C C U G C U SEQRES 1 B 46 G C G C C G G C C A A C U SEQRES 2 B 46 C C G U G C C A G C A G C SEQRES 3 B 46 C G C G G U A A U A C G G SEQRES 4 B 46 A G G G C G C SEQRES 1 C 13 G C U G C A U G G C C G U SEQRES 1 D 15 U C U G G U C A G C A U G SEQRES 2 D 15 G C SEQRES 1 E 53 G G G A U G C G U A G G A SEQRES 2 E 53 U A G G U G G G A G C G C SEQRES 3 E 53 A A G C G C C G G U G A A SEQRES 4 E 53 A U A C C A C C C U U C C SEQRES 5 E 53 C SEQRES 1 F 150 ARG TYR ALA ASN LYS ARG PHE ARG LYS ALA GLN CYS PRO SEQRES 2 F 150 ILE ILE GLU ARG LEU THR ASN SER LEU MET MET ASN GLY SEQRES 3 F 150 ARG ASN ASN GLY LYS LYS LEU LYS ALA VAL ARG ILE ILE SEQRES 4 F 150 LYS HIS THR LEU ASP ILE ILE ASN VAL LEU THR ASP GLN SEQRES 5 F 150 ASN PRO ILE GLN VAL VAL VAL ASP ALA ILE THR ASN THR SEQRES 6 F 150 GLY PRO ARG GLU ASP THR THR ARG VAL GLY GLY GLY GLY SEQRES 7 F 150 ALA ALA ARG ARG GLN ALA VAL ASP VAL SER PRO LEU ARG SEQRES 8 F 150 ARG VAL ASN GLN ALA ILE ALA LEU LEU THR ILE GLY ALA SEQRES 9 F 150 ARG GLU ALA ALA PHE ARG ASN ILE LYS THR ILE ALA GLU SEQRES 10 F 150 THR LEU ALA GLU GLU LEU ILE ASN ALA ALA LYS GLY SER SEQRES 11 F 150 SER THR SER TYR ALA ILE LYS LYS LYS ASP GLU LEU GLU SEQRES 12 F 150 ARG VAL ALA LYS SER ASN ARG SEQRES 1 G 213 ILE THR SER SER GLN VAL ARG GLU HIS VAL LYS GLU LEU SEQRES 2 G 213 LEU LYS TYR SER ASN GLU THR LYS LYS ARG ASN PHE LEU SEQRES 3 G 213 GLU THR VAL GLU LEU GLN VAL GLY LEU LYS ASN TYR ASP SEQRES 4 G 213 PRO GLN ARG ASP LYS ARG PHE SER GLY SER LEU LYS LEU SEQRES 5 G 213 PRO ASN CYS PRO ARG PRO ASN MET SER ILE CYS ILE PHE SEQRES 6 G 213 GLY ASP ALA PHE ASP VAL ASP ARG ALA LYS SER CYS GLY SEQRES 7 G 213 VAL ASP ALA MET SER VAL ASP ASP LEU LYS LYS LEU ASN SEQRES 8 G 213 LYS ASN LYS LYS LEU ILE LYS LYS LEU SER LYS LYS TYR SEQRES 9 G 213 ASN ALA PHE ILE ALA SER GLU VAL LEU ILE LYS GLN VAL SEQRES 10 G 213 PRO ARG LEU LEU GLY PRO GLN LEU SER LYS ALA GLY LYS SEQRES 11 G 213 PHE PRO THR PRO VAL SER HIS ASN ASP ASP LEU TYR GLY SEQRES 12 G 213 LYS VAL THR ASP VAL ARG SER THR ILE LYS PHE GLN LEU SEQRES 13 G 213 LYS LYS VAL LEU CYS LEU ALA VAL ALA VAL GLY ASN VAL SEQRES 14 G 213 GLU MET GLU GLU ASP VAL LEU VAL ASN GLN ILE LEU MET SEQRES 15 G 213 SER VAL ASN PHE PHE VAL SER LEU LEU LYS LYS ASN TRP SEQRES 16 G 213 GLN ASN VAL GLY SER LEU VAL VAL LYS SER SER MET GLY SEQRES 17 G 213 PRO ALA PHE ARG LEU SEQRES 1 H 165 ASN PRO MET ARG ASP LEU LYS ILE GLU LYS LEU VAL LEU SEQRES 2 H 165 ASN ILE SER VAL GLY GLU SER GLY ASP ARG LEU THR ARG SEQRES 3 H 165 ALA SER LYS VAL LEU GLU GLN LEU SER GLY GLN THR PRO SEQRES 4 H 165 VAL GLN SER LYS ALA ARG TYR THR VAL ARG THR PHE GLY SEQRES 5 H 165 ILE ARG ARG ASN GLU LYS ILE ALA VAL HIS VAL THR VAL SEQRES 6 H 165 ARG GLY PRO LYS ALA GLU GLU ILE LEU GLU ARG GLY LEU SEQRES 7 H 165 LYS VAL LYS GLU TYR GLN LEU ARG ASP ARG ASN PHE SER SEQRES 8 H 165 ALA THR GLY ASN PHE GLY PHE GLY ILE ASP GLU HIS ILE SEQRES 9 H 165 ASP LEU GLY ILE LYS TYR ASP PRO SER ILE GLY ILE PHE SEQRES 10 H 165 GLY MET ASP PHE TYR VAL VAL MET ASN ARG PRO GLY ALA SEQRES 11 H 165 ARG VAL THR ARG ARG LYS ARG CYS LYS GLY THR VAL GLY SEQRES 12 H 165 ASN SER HIS LYS THR THR LYS GLU ASP THR VAL SER TRP SEQRES 13 H 165 PHE LYS GLN LYS TYR ASP ALA ASP VAL HELIX 1 1 GLU F 90 ARG F 101 1 12 HELIX 2 2 LYS F 105 THR F 124 1 20 HELIX 3 3 ASN F 127 GLY F 140 1 14 HELIX 4 4 SER F 162 ALA F 181 1 20 HELIX 5 5 ILE F 189 ALA F 201 1 13 HELIX 6 6 SER F 207 ALA F 220 1 14 HELIX 7 7 THR G 5 SER G 20 1 16 HELIX 8 8 PHE G 72 GLY G 81 1 10 HELIX 9 9 ASP G 88 ASN G 96 1 9 HELIX 10 10 ASN G 96 TYR G 107 1 12 HELIX 11 11 VAL G 115 ILE G 117 5 3 HELIX 12 12 LYS G 118 LEU G 124 1 7 HELIX 13 13 LEU G 124 GLY G 132 1 9 HELIX 14 14 LEU G 144 ARG G 152 1 9 HELIX 15 15 GLU G 175 LEU G 194 1 20 HELIX 16 16 LYS G 196 GLN G 199 5 4 HELIX 17 17 THR H 154 VAL H 159 1 6 SHEET 1 A 2 GLU F 143 GLY F 149 0 SHEET 2 A 2 ALA F 154 ASP F 160 -1 O GLN F 157 N THR F 146 SHEET 1 B 4 CYS G 164 ASN G 171 0 SHEET 2 B 4 THR G 31 LEU G 38 -1 N LEU G 34 O VAL G 167 SHEET 3 B 4 VAL G 201 SER G 208 -1 O LYS G 207 N GLU G 33 SHEET 4 B 4 PHE G 214 ARG G 215 -1 O PHE G 214 N VAL G 206 SHEET 1 C 2 SER G 50 LYS G 54 0 SHEET 2 C 2 THR G 154 GLN G 158 -1 O PHE G 157 N GLY G 51 SHEET 1 D 4 ASP G 83 SER G 86 0 SHEET 2 D 4 ILE G 65 GLY G 69 1 N ILE G 67 O MET G 85 SHEET 3 D 4 ALA G 109 SER G 113 1 O ILE G 111 N PHE G 68 SHEET 4 D 4 THR G 136 VAL G 138 1 O THR G 136 N ALA G 112 SHEET 1 E 2 LYS H 12 GLU H 14 0 SHEET 2 E 2 VAL H 129 ASN H 131 -1 O ASN H 131 N LYS H 12 CISPEP 1 GLY H 72 PRO H 73 0 -8.14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000