HEADER OXIDOREDUCTASE 27-OCT-06 2NPB TITLE NMR SOLUTION STRUCTURE OF MOUSE SELW COMPND MOL_ID: 1; COMPND 2 MOLECULE: SELENOPROTEIN W; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: C57BL-6; SOURCE 6 TISSUE: BRAIN; SOURCE 7 GENE: SEPW1; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PFA6 DERIVATE OF PET21B KEYWDS SELENOPROTEIN, THIOREDOXIN-LIKE FOLD, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.L.AACHMANN,D.E.FOMENKO,A.SORAGNI,V.N.GLADYSHEV,A.DIKIY REVDAT 5 14-JUN-23 2NPB 1 REMARK REVDAT 4 26-FEB-20 2NPB 1 REMARK SEQADV REVDAT 3 09-APR-14 2NPB 1 SEQADV REVDAT 2 18-MAR-08 2NPB 1 JRNL VERSN REVDAT 1 14-NOV-06 2NPB 0 JRNL AUTH F.L.AACHMANN,D.E.FOMENKO,A.SORAGNI,V.N.GLADYSHEV,A.DIKIY JRNL TITL SOLUTION STRUCTURE OF SELENOPROTEIN W AND NMR ANALYSIS OF JRNL TITL 2 ITS INTERACTION WITH 14-3-3 PROTEINS JRNL REF J.BIOL.CHEM. V. 282 37036 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17928294 JRNL DOI 10.1074/JBC.M705410200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, AMBER 9 REMARK 3 AUTHORS : BRUKER (XWINNMR), CASE (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NPB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000040137. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.1 REMARK 210 IONIC STRENGTH : 50MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM SELW U-15N,13C; 25MM REMARK 210 PHOSPHATE BUFFER, 50MM NACL, REMARK 210 2.5MM DTT; 90% H2O, 10% D2O; 1MM REMARK 210 SELW U-15N,13C; 25MM PHOSPHATE REMARK 210 BUFFER, 50MM NACL, 2.5MM DTT; REMARK 210 99.9% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.4, CYANA 2.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, ENERGY MINIMISATION, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 96 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 89 REMARK 465 GLU A 90 REMARK 465 HIS A 91 REMARK 465 HIS A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 49 HG SER A 59 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 2 ASP A 68 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 3 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 5 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 6 ARG A 6 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 6 ARG A 62 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 8 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 9 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 10 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 11 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 11 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 12 ASP A 68 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 13 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 13 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 14 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 14 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 15 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 16 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 16 ARG A 6 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 18 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 19 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 13 -175.45 58.53 REMARK 500 1 GLN A 43 -48.03 66.48 REMARK 500 1 PHE A 48 77.07 177.76 REMARK 500 2 ALA A 2 -177.00 -68.14 REMARK 500 2 TYR A 9 -154.25 -153.22 REMARK 500 2 ALA A 12 0.75 -69.82 REMARK 500 2 GLN A 43 -73.58 -136.57 REMARK 500 2 VAL A 44 -35.05 -154.36 REMARK 500 2 THR A 45 -72.02 -139.49 REMARK 500 2 ALA A 53 17.67 46.10 REMARK 500 2 TYR A 66 -167.54 -62.04 REMARK 500 2 VAL A 67 61.53 -63.58 REMARK 500 3 SER A 10 85.86 -67.65 REMARK 500 3 CYS A 13 -177.71 59.23 REMARK 500 3 THR A 45 97.78 -48.51 REMARK 500 3 ALA A 53 29.91 43.25 REMARK 500 3 TYR A 66 -170.38 -62.18 REMARK 500 3 VAL A 67 89.41 -62.49 REMARK 500 4 PHE A 30 81.42 -161.48 REMARK 500 4 GLU A 39 47.54 -98.03 REMARK 500 4 ALA A 53 29.23 48.16 REMARK 500 4 TYR A 66 -179.09 -57.52 REMARK 500 5 GLN A 43 -36.65 64.60 REMARK 500 6 CYS A 13 73.79 -106.08 REMARK 500 6 THR A 45 48.44 -75.80 REMARK 500 6 TYR A 66 -166.03 -66.76 REMARK 500 7 ALA A 12 42.28 -71.50 REMARK 500 7 CYS A 13 179.54 56.93 REMARK 500 7 GLN A 43 -29.60 61.36 REMARK 500 7 THR A 45 52.43 37.77 REMARK 500 7 ALA A 53 20.57 49.08 REMARK 500 7 SER A 59 110.02 -161.70 REMARK 500 7 TYR A 66 -160.10 -112.83 REMARK 500 8 PHE A 30 85.45 -160.20 REMARK 500 8 GLN A 43 -27.85 65.51 REMARK 500 8 TYR A 66 -179.52 -62.28 REMARK 500 8 VAL A 67 92.50 -68.22 REMARK 500 9 GLN A 43 -55.42 -136.67 REMARK 500 9 VAL A 44 -72.92 -142.65 REMARK 500 9 THR A 45 -104.56 49.76 REMARK 500 9 TYR A 66 -153.57 -63.34 REMARK 500 9 VAL A 67 43.20 -62.65 REMARK 500 10 ALA A 12 17.37 -67.64 REMARK 500 10 CYS A 13 -178.59 55.44 REMARK 500 10 THR A 41 58.42 -118.65 REMARK 500 10 GLN A 43 32.20 -64.14 REMARK 500 10 VAL A 44 -69.05 -134.75 REMARK 500 10 THR A 45 -65.96 -149.41 REMARK 500 10 SER A 59 98.98 -164.07 REMARK 500 11 ALA A 2 179.20 51.99 REMARK 500 REMARK 500 THIS ENTRY HAS 106 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 34 ASP A 35 2 143.81 REMARK 500 TYR A 66 VAL A 67 2 143.48 REMARK 500 TYR A 66 VAL A 67 3 146.35 REMARK 500 LEU A 34 ASP A 35 4 148.12 REMARK 500 MET A 1 ALA A 2 5 149.16 REMARK 500 MET A 1 ALA A 2 7 142.46 REMARK 500 LEU A 34 ASP A 35 7 149.87 REMARK 500 TYR A 66 VAL A 67 9 142.13 REMARK 500 GLU A 39 GLY A 40 10 -149.64 REMARK 500 MET A 1 ALA A 2 11 -149.57 REMARK 500 TYR A 66 VAL A 67 12 140.69 REMARK 500 GLY A 63 ASP A 64 13 -134.89 REMARK 500 LEU A 34 ASP A 35 14 147.81 REMARK 500 TYR A 66 VAL A 67 14 143.66 REMARK 500 ASP A 64 GLY A 65 15 -148.93 REMARK 500 GLY A 65 TYR A 66 15 139.41 REMARK 500 TYR A 66 VAL A 67 17 149.92 REMARK 500 GLU A 24 LYS A 25 18 148.77 REMARK 500 TYR A 66 VAL A 67 18 147.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 62 0.08 SIDE CHAIN REMARK 500 2 ARG A 6 0.09 SIDE CHAIN REMARK 500 2 TYR A 19 0.07 SIDE CHAIN REMARK 500 2 HIS A 58 0.11 SIDE CHAIN REMARK 500 3 ARG A 6 0.09 SIDE CHAIN REMARK 500 3 HIS A 58 0.10 SIDE CHAIN REMARK 500 7 ARG A 6 0.11 SIDE CHAIN REMARK 500 8 ARG A 62 0.10 SIDE CHAIN REMARK 500 9 ARG A 6 0.10 SIDE CHAIN REMARK 500 10 TYR A 19 0.08 SIDE CHAIN REMARK 500 12 HIS A 58 0.09 SIDE CHAIN REMARK 500 13 ARG A 6 0.10 SIDE CHAIN REMARK 500 14 HIS A 58 0.10 SIDE CHAIN REMARK 500 15 ARG A 6 0.08 SIDE CHAIN REMARK 500 15 ARG A 62 0.10 SIDE CHAIN REMARK 500 16 ARG A 6 0.12 SIDE CHAIN REMARK 500 16 ARG A 62 0.09 SIDE CHAIN REMARK 500 18 ARG A 6 0.09 SIDE CHAIN REMARK 500 19 ARG A 6 0.11 SIDE CHAIN REMARK 500 19 ARG A 62 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7324 RELATED DB: BMRB DBREF 2NPB A 1 88 UNP P63300 SEPW1_MOUSE 1 88 SEQADV 2NPB SER A 10 UNP P63300 CYS 10 ENGINEERED MUTATION SEQADV 2NPB CYS A 13 UNP P63300 SEC 13 ENGINEERED MUTATION SEQADV 2NPB LEU A 89 UNP P63300 EXPRESSION TAG SEQADV 2NPB GLU A 90 UNP P63300 EXPRESSION TAG SEQADV 2NPB HIS A 91 UNP P63300 EXPRESSION TAG SEQADV 2NPB HIS A 92 UNP P63300 EXPRESSION TAG SEQADV 2NPB HIS A 93 UNP P63300 EXPRESSION TAG SEQADV 2NPB HIS A 94 UNP P63300 EXPRESSION TAG SEQADV 2NPB HIS A 95 UNP P63300 EXPRESSION TAG SEQADV 2NPB HIS A 96 UNP P63300 EXPRESSION TAG SEQRES 1 A 96 MET ALA LEU ALA VAL ARG VAL VAL TYR SER GLY ALA CYS SEQRES 2 A 96 GLY TYR LYS PRO LYS TYR LEU GLN LEU LYS GLU LYS LEU SEQRES 3 A 96 GLU HIS GLU PHE PRO GLY CYS LEU ASP ILE CYS GLY GLU SEQRES 4 A 96 GLY THR PRO GLN VAL THR GLY PHE PHE GLU VAL THR VAL SEQRES 5 A 96 ALA GLY LYS LEU VAL HIS SER LYS LYS ARG GLY ASP GLY SEQRES 6 A 96 TYR VAL ASP THR GLU SER LYS PHE ARG LYS LEU VAL THR SEQRES 7 A 96 ALA ILE LYS ALA ALA LEU ALA GLN CYS GLN LEU GLU HIS SEQRES 8 A 96 HIS HIS HIS HIS HIS HELIX 1 1 GLY A 14 PHE A 30 1 17 HELIX 2 2 THR A 69 GLN A 88 1 20 SHEET 1 A 4 LEU A 34 GLY A 38 0 SHEET 2 A 4 LEU A 3 VAL A 8 1 N LEU A 3 O ASP A 35 SHEET 3 A 4 GLU A 49 VAL A 52 -1 O THR A 51 N ARG A 6 SHEET 4 A 4 LYS A 55 SER A 59 -1 O VAL A 57 N VAL A 50 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1