data_2NPH # _entry.id 2NPH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2NPH pdb_00002nph 10.2210/pdb2nph/pdb RCSB RCSB040143 ? ? WWPDB D_1000040143 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-12-19 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2018-01-31 6 'Structure model' 1 5 2021-10-20 7 'Structure model' 1 6 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 6 'Structure model' 'Database references' 6 7 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' citation_author 3 6 'Structure model' database_2 4 6 'Structure model' struct_ref_seq_dif 5 7 'Structure model' chem_comp_atom 6 7 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_citation_author.name' 2 6 'Structure model' '_database_2.pdbx_DOI' 3 6 'Structure model' '_database_2.pdbx_database_accession' 4 6 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.entry_id 2NPH _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-10-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1G6L 'Unliganded closed-flap structure of tethered HIV-1 PR' unspecified PDB 1LV1 'Unliganded closed-flap structure of C1095A mutant of tethered HIV-1 PR' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hosur, M.V.' 1 'Das, A.' 2 'Prashar, V.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystal structure of HIV-1 protease in situ product complex and observation of a low-barrier hydrogen bond between catalytic aspartates ; Proc.Natl.Acad.Sci.Usa 103 18464 18469 2006 PNASA6 US 0027-8424 0040 ? 17116869 10.1073/pnas.0605809103 1 'Observation of a tetrahedral reaction intermediate in HIV-1 protease substrate complex' Biochem.J. 389 365 371 2005 BIJOAK UK 0264-6021 0043 ? ? ? 2 'Rapid screening for HIV-1 protease inhibitor leads through X-ray diffraction' 'Acta Crystallogr.,Sect.D' 60 594 596 2004 ABCRE6 DK 0907-4449 0766 ? ? ? 3 '1.9A X-ray study shows closed flap conformation in crystals of tethered HIV-1 PR' Proteins 43 57 64 2001 PSFGEY US 0887-3585 0867 ? ? ? 4 'Effects of remote mutation on the autolysis of HIV-1 PR: X-ray and NMR investigations' Biochem.Biophys.Res.Commun. 294 395 401 2002 BBRCA9 US 0006-291X 0146 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Das, A.' 1 ? primary 'Prashar, V.' 2 ? primary 'Mahale, S.' 3 ? primary 'Serre, L.' 4 ? primary 'Ferrer, J.-L.' 5 ? primary 'Hosur, M.V.' 6 ? 1 'Kumar, M.' 7 ? 1 'Prashar, V.' 8 ? 1 'Mahale, S.' 9 ? 1 'Hosur, M.V.' 10 ? 2 'Pillai, B.' 11 ? 2 'Bhat, S.V.' 12 ? 2 'Kannan, K.K.' 13 ? 2 'Hosur, M.V.' 14 ? 3 'Pillai, B.' 15 ? 3 'Kannan, K.K.' 16 ? 3 'Hosur, M.V.' 17 ? 4 'Kumar, M.' 18 ? 4 'Kannan, K.K.' 19 ? 4 'Hosur, M.V.' 20 ? 4 'Bhavesh, N.S.' 21 ? 4 'Chatterjee, A.' 22 ? 4 'Mittal, R.' 23 ? 4 'Hosur, R.V.' 24 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEASE RETROPEPSIN' 10817.782 2 3.4.23.16 ? ? 'Observation of a Low Barrier Hydrogen Bond between catalytic aspartates' 2 polymer syn 'tetrapeptide fragment' 466.484 1 ? ? ? ? 3 polymer syn 'pentapeptide fragment' 523.537 1 ? ? ? ? 4 water nat water 18.015 156 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HIV-1 PROTEASE' # _entity_name_sys.entity_id 1 _entity_name_sys.name E.C.3.4.23.16 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGMTLNF ; ;PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGMTLNF ; A,B ? 2 'polypeptide(L)' no no AETF AETF S ? 3 'polypeptide(L)' no no YVDGA YVDGA T ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 VAL n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 GLN n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 LEU n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 MET n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n 2 1 ALA n 2 2 GLU n 2 3 THR n 2 4 PHE n 3 1 TYR n 3 2 VAL n 3 3 ASP n 3 4 GLY n 3 5 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lentivirus _entity_src_gen.pdbx_gene_src_gene pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET11A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 MET 95 95 95 MET MET A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1001 1001 PRO PRO B . n B 1 2 GLN 2 1002 1002 GLN GLN B . n B 1 3 VAL 3 1003 1003 VAL VAL B . n B 1 4 THR 4 1004 1004 THR THR B . n B 1 5 LEU 5 1005 1005 LEU LEU B . n B 1 6 TRP 6 1006 1006 TRP TRP B . n B 1 7 GLN 7 1007 1007 GLN GLN B . n B 1 8 ARG 8 1008 1008 ARG ARG B . n B 1 9 PRO 9 1009 1009 PRO PRO B . n B 1 10 LEU 10 1010 1010 LEU LEU B . n B 1 11 VAL 11 1011 1011 VAL VAL B . n B 1 12 THR 12 1012 1012 THR THR B . n B 1 13 ILE 13 1013 1013 ILE ILE B . n B 1 14 LYS 14 1014 1014 LYS LYS B . n B 1 15 ILE 15 1015 1015 ILE ILE B . n B 1 16 GLY 16 1016 1016 GLY GLY B . n B 1 17 GLY 17 1017 1017 GLY GLY B . n B 1 18 GLN 18 1018 1018 GLN GLN B . n B 1 19 LEU 19 1019 1019 LEU LEU B . n B 1 20 LYS 20 1020 1020 LYS LYS B . n B 1 21 GLU 21 1021 1021 GLU GLU B . n B 1 22 ALA 22 1022 1022 ALA ALA B . n B 1 23 LEU 23 1023 1023 LEU LEU B . n B 1 24 LEU 24 1024 1024 LEU LEU B . n B 1 25 ASP 25 1025 1025 ASP ASP B . n B 1 26 THR 26 1026 1026 THR THR B . n B 1 27 GLY 27 1027 1027 GLY GLY B . n B 1 28 ALA 28 1028 1028 ALA ALA B . n B 1 29 ASP 29 1029 1029 ASP ASP B . n B 1 30 ASP 30 1030 1030 ASP ASP B . n B 1 31 THR 31 1031 1031 THR THR B . n B 1 32 VAL 32 1032 1032 VAL VAL B . n B 1 33 LEU 33 1033 1033 LEU LEU B . n B 1 34 GLU 34 1034 1034 GLU GLU B . n B 1 35 GLU 35 1035 1035 GLU GLU B . n B 1 36 MET 36 1036 1036 MET MET B . n B 1 37 SER 37 1037 1037 SER SER B . n B 1 38 LEU 38 1038 1038 LEU LEU B . n B 1 39 PRO 39 1039 1039 PRO PRO B . n B 1 40 GLY 40 1040 1040 GLY GLY B . n B 1 41 ARG 41 1041 1041 ARG ARG B . n B 1 42 TRP 42 1042 1042 TRP TRP B . n B 1 43 LYS 43 1043 1043 LYS LYS B . n B 1 44 PRO 44 1044 1044 PRO PRO B . n B 1 45 LYS 45 1045 1045 LYS LYS B . n B 1 46 MET 46 1046 1046 MET MET B . n B 1 47 ILE 47 1047 1047 ILE ILE B . n B 1 48 GLY 48 1048 1048 GLY GLY B . n B 1 49 GLY 49 1049 1049 GLY GLY B . n B 1 50 ILE 50 1050 1050 ILE ILE B . n B 1 51 GLY 51 1051 1051 GLY GLY B . n B 1 52 GLY 52 1052 1052 GLY GLY B . n B 1 53 PHE 53 1053 1053 PHE PHE B . n B 1 54 ILE 54 1054 1054 ILE ILE B . n B 1 55 LYS 55 1055 1055 LYS LYS B . n B 1 56 VAL 56 1056 1056 VAL VAL B . n B 1 57 ARG 57 1057 1057 ARG ARG B . n B 1 58 GLN 58 1058 1058 GLN GLN B . n B 1 59 TYR 59 1059 1059 TYR TYR B . n B 1 60 ASP 60 1060 1060 ASP ASP B . n B 1 61 GLN 61 1061 1061 GLN GLN B . n B 1 62 ILE 62 1062 1062 ILE ILE B . n B 1 63 LEU 63 1063 1063 LEU LEU B . n B 1 64 ILE 64 1064 1064 ILE ILE B . n B 1 65 GLU 65 1065 1065 GLU GLU B . n B 1 66 ILE 66 1066 1066 ILE ILE B . n B 1 67 CYS 67 1067 1067 CYS CYS B . n B 1 68 GLY 68 1068 1068 GLY GLY B . n B 1 69 HIS 69 1069 1069 HIS HIS B . n B 1 70 LYS 70 1070 1070 LYS LYS B . n B 1 71 ALA 71 1071 1071 ALA ALA B . n B 1 72 ILE 72 1072 1072 ILE ILE B . n B 1 73 GLY 73 1073 1073 GLY GLY B . n B 1 74 THR 74 1074 1074 THR THR B . n B 1 75 VAL 75 1075 1075 VAL VAL B . n B 1 76 LEU 76 1076 1076 LEU LEU B . n B 1 77 VAL 77 1077 1077 VAL VAL B . n B 1 78 GLY 78 1078 1078 GLY GLY B . n B 1 79 PRO 79 1079 1079 PRO PRO B . n B 1 80 THR 80 1080 1080 THR THR B . n B 1 81 PRO 81 1081 1081 PRO PRO B . n B 1 82 VAL 82 1082 1082 VAL VAL B . n B 1 83 ASN 83 1083 1083 ASN ASN B . n B 1 84 ILE 84 1084 1084 ILE ILE B . n B 1 85 ILE 85 1085 1085 ILE ILE B . n B 1 86 GLY 86 1086 1086 GLY GLY B . n B 1 87 ARG 87 1087 1087 ARG ARG B . n B 1 88 ASN 88 1088 1088 ASN ASN B . n B 1 89 LEU 89 1089 1089 LEU LEU B . n B 1 90 LEU 90 1090 1090 LEU LEU B . n B 1 91 THR 91 1091 1091 THR THR B . n B 1 92 GLN 92 1092 1092 GLN GLN B . n B 1 93 ILE 93 1093 1093 ILE ILE B . n B 1 94 GLY 94 1094 1094 GLY GLY B . n B 1 95 MET 95 1095 1095 MET MET B . n B 1 96 THR 96 1096 1096 THR THR B . n B 1 97 LEU 97 1097 1097 LEU LEU B . n B 1 98 ASN 98 1098 1098 ASN ASN B . n B 1 99 PHE 99 1099 1099 PHE PHE B . n C 2 1 ALA 1 1 1 ALA ALA S . n C 2 2 GLU 2 2 2 GLU GLU S . n C 2 3 THR 3 3 3 THR THR S . n C 2 4 PHE 4 4 4 PHE PHE S . n D 3 1 TYR 1 5 5 TYR TYR T . n D 3 2 VAL 2 6 6 VAL VAL T . n D 3 3 ASP 3 7 7 ASP ASP T . n D 3 4 GLY 4 8 8 GLY GLY T . n D 3 5 ALA 5 9 9 ALA ALA T . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 309 309 HOH HOH A . E 4 HOH 2 310 310 HOH HOH A . E 4 HOH 3 311 311 HOH HOH A . E 4 HOH 4 313 313 HOH HOH A . E 4 HOH 5 316 316 HOH HOH A . E 4 HOH 6 317 317 HOH HOH A . E 4 HOH 7 318 318 HOH HOH A . E 4 HOH 8 320 320 HOH HOH A . E 4 HOH 9 321 321 HOH HOH A . E 4 HOH 10 322 322 HOH HOH A . E 4 HOH 11 323 323 HOH HOH A . E 4 HOH 12 324 324 HOH HOH A . E 4 HOH 13 326 326 HOH HOH A . E 4 HOH 14 328 328 HOH HOH A . E 4 HOH 15 333 333 HOH HOH A . E 4 HOH 16 334 334 HOH HOH A . E 4 HOH 17 337 337 HOH HOH A . E 4 HOH 18 338 338 HOH HOH A . E 4 HOH 19 339 339 HOH HOH A . E 4 HOH 20 340 340 HOH HOH A . E 4 HOH 21 341 341 HOH HOH A . E 4 HOH 22 342 342 HOH HOH A . E 4 HOH 23 344 344 HOH HOH A . E 4 HOH 24 345 345 HOH HOH A . E 4 HOH 25 346 346 HOH HOH A . E 4 HOH 26 348 348 HOH HOH A . E 4 HOH 27 350 350 HOH HOH A . E 4 HOH 28 351 351 HOH HOH A . E 4 HOH 29 353 353 HOH HOH A . E 4 HOH 30 356 356 HOH HOH A . E 4 HOH 31 357 357 HOH HOH A . E 4 HOH 32 358 358 HOH HOH A . E 4 HOH 33 370 370 HOH HOH A . E 4 HOH 34 371 371 HOH HOH A . E 4 HOH 35 397 397 HOH HOH A . E 4 HOH 36 398 398 HOH HOH A . E 4 HOH 37 399 399 HOH HOH A . E 4 HOH 38 400 400 HOH HOH A . E 4 HOH 39 401 401 HOH HOH A . E 4 HOH 40 402 402 HOH HOH A . E 4 HOH 41 403 403 HOH HOH A . E 4 HOH 42 404 404 HOH HOH A . E 4 HOH 43 405 405 HOH HOH A . E 4 HOH 44 406 406 HOH HOH A . E 4 HOH 45 408 408 HOH HOH A . E 4 HOH 46 409 409 HOH HOH A . E 4 HOH 47 414 414 HOH HOH A . E 4 HOH 48 415 415 HOH HOH A . E 4 HOH 49 417 417 HOH HOH A . E 4 HOH 50 418 418 HOH HOH A . E 4 HOH 51 419 419 HOH HOH A . E 4 HOH 52 420 420 HOH HOH A . E 4 HOH 53 421 421 HOH HOH A . E 4 HOH 54 423 423 HOH HOH A . E 4 HOH 55 424 424 HOH HOH A . E 4 HOH 56 425 425 HOH HOH A . E 4 HOH 57 440 440 HOH HOH A . E 4 HOH 58 441 441 HOH HOH A . E 4 HOH 59 444 444 HOH HOH A . E 4 HOH 60 447 447 HOH HOH A . E 4 HOH 61 450 450 HOH HOH A . E 4 HOH 62 453 453 HOH HOH A . E 4 HOH 63 454 454 HOH HOH A . E 4 HOH 64 455 455 HOH HOH A . E 4 HOH 65 459 459 HOH HOH A . E 4 HOH 66 460 460 HOH HOH A . E 4 HOH 67 466 466 HOH HOH A . E 4 HOH 68 467 467 HOH HOH A . E 4 HOH 69 468 468 HOH HOH A . E 4 HOH 70 469 469 HOH HOH A . E 4 HOH 71 470 470 HOH HOH A . E 4 HOH 72 471 471 HOH HOH A . E 4 HOH 73 482 482 HOH HOH A . E 4 HOH 74 484 484 HOH HOH A . E 4 HOH 75 487 487 HOH HOH A . E 4 HOH 76 496 496 HOH HOH A . E 4 HOH 77 497 497 HOH HOH A . E 4 HOH 78 498 498 HOH HOH A . E 4 HOH 79 499 499 HOH HOH A . E 4 HOH 80 500 500 HOH HOH A . E 4 HOH 81 502 502 HOH HOH A . E 4 HOH 82 503 503 HOH HOH A . F 4 HOH 1 305 305 HOH HOH B . F 4 HOH 2 314 314 HOH HOH B . F 4 HOH 3 319 319 HOH HOH B . F 4 HOH 4 330 330 HOH HOH B . F 4 HOH 5 332 332 HOH HOH B . F 4 HOH 6 352 352 HOH HOH B . F 4 HOH 7 355 355 HOH HOH B . F 4 HOH 8 359 359 HOH HOH B . F 4 HOH 9 360 360 HOH HOH B . F 4 HOH 10 363 363 HOH HOH B . F 4 HOH 11 364 364 HOH HOH B . F 4 HOH 12 365 365 HOH HOH B . F 4 HOH 13 366 366 HOH HOH B . F 4 HOH 14 367 367 HOH HOH B . F 4 HOH 15 368 368 HOH HOH B . F 4 HOH 16 369 369 HOH HOH B . F 4 HOH 17 372 372 HOH HOH B . F 4 HOH 18 373 373 HOH HOH B . F 4 HOH 19 375 375 HOH HOH B . F 4 HOH 20 376 376 HOH HOH B . F 4 HOH 21 377 377 HOH HOH B . F 4 HOH 22 380 380 HOH HOH B . F 4 HOH 23 381 381 HOH HOH B . F 4 HOH 24 385 385 HOH HOH B . F 4 HOH 25 386 386 HOH HOH B . F 4 HOH 26 387 387 HOH HOH B . F 4 HOH 27 389 389 HOH HOH B . F 4 HOH 28 390 390 HOH HOH B . F 4 HOH 29 391 391 HOH HOH B . F 4 HOH 30 393 393 HOH HOH B . F 4 HOH 31 394 394 HOH HOH B . F 4 HOH 32 395 395 HOH HOH B . F 4 HOH 33 396 396 HOH HOH B . F 4 HOH 34 442 442 HOH HOH B . F 4 HOH 35 443 443 HOH HOH B . F 4 HOH 36 445 445 HOH HOH B . F 4 HOH 37 446 446 HOH HOH B . F 4 HOH 38 448 448 HOH HOH B . F 4 HOH 39 449 449 HOH HOH B . F 4 HOH 40 451 451 HOH HOH B . F 4 HOH 41 452 452 HOH HOH B . F 4 HOH 42 456 456 HOH HOH B . F 4 HOH 43 458 458 HOH HOH B . F 4 HOH 44 461 461 HOH HOH B . F 4 HOH 45 462 462 HOH HOH B . F 4 HOH 46 463 463 HOH HOH B . F 4 HOH 47 464 464 HOH HOH B . F 4 HOH 48 465 465 HOH HOH B . F 4 HOH 49 472 472 HOH HOH B . F 4 HOH 50 473 473 HOH HOH B . F 4 HOH 51 474 474 HOH HOH B . F 4 HOH 52 475 475 HOH HOH B . F 4 HOH 53 476 476 HOH HOH B . F 4 HOH 54 477 477 HOH HOH B . F 4 HOH 55 478 478 HOH HOH B . F 4 HOH 56 479 479 HOH HOH B . F 4 HOH 57 480 480 HOH HOH B . F 4 HOH 58 481 481 HOH HOH B . F 4 HOH 59 483 483 HOH HOH B . F 4 HOH 60 485 485 HOH HOH B . F 4 HOH 61 486 486 HOH HOH B . F 4 HOH 62 488 488 HOH HOH B . F 4 HOH 63 489 489 HOH HOH B . F 4 HOH 64 490 490 HOH HOH B . F 4 HOH 65 491 491 HOH HOH B . F 4 HOH 66 492 492 HOH HOH B . F 4 HOH 67 493 493 HOH HOH B . F 4 HOH 68 494 494 HOH HOH B . F 4 HOH 69 495 495 HOH HOH B . F 4 HOH 70 501 501 HOH HOH B . F 4 HOH 71 504 504 HOH HOH B . F 4 HOH 72 506 506 HOH HOH B . G 4 HOH 1 301 301 HOH HOH T . G 4 HOH 2 388 388 HOH HOH T . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B MET 1095 ? CG ? B MET 95 CG 2 1 Y 1 B MET 1095 ? SD ? B MET 95 SD 3 1 Y 1 B MET 1095 ? CE ? B MET 95 CE # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 MAR345 'CCD 165' ? ? ? ? 'data collection' ? ? ? 3 XDS . ? ? ? ? 'data reduction' ? ? ? 4 XDS . ? ? ? ? 'data scaling' ? ? ? 5 CNS . ? ? ? ? phasing ? ? ? 6 # _cell.length_a 62.030 _cell.length_b 62.030 _cell.length_c 81.780 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 2NPH _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61' _symmetry.entry_id 2NPH _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 169 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 2NPH _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_percent_sol 38.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details 'Ammonium Sulfate precipitant, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97945 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97945 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A # _reflns.entry_id 2NPH _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.650 _reflns.d_resolution_low 32.53 _reflns.number_all 20957 _reflns.number_obs 20326 _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rsym_value 0.081 _reflns.pdbx_netI_over_sigmaI 10.16 _reflns.B_iso_Wilson_estimate 39.3 _reflns.pdbx_redundancy 5.53 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2NPH _refine.ls_d_res_high 1.650 _refine.ls_d_res_low 32.530 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 100.000 _refine.ls_number_reflns_obs 20326 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.216 _refine.ls_R_factor_R_work 0.214 _refine.ls_R_factor_R_free 0.259 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1069 _refine.B_iso_mean 33.426 _refine.aniso_B[1][1] 0.360 _refine.aniso_B[2][2] 0.360 _refine.aniso_B[3][3] -0.540 _refine.aniso_B[1][2] 0.180 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.pdbx_overall_ESU_R 0.130 _refine.pdbx_overall_ESU_R_Free 0.127 _refine.overall_SU_ML 0.097 _refine.overall_SU_B 5.895 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 20957 _refine.ls_R_factor_all 0.216 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1585 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 156 _refine_hist.number_atoms_total 1741 _refine_hist.d_res_high 1.650 _refine_hist.d_res_low 32.530 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1611 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2183 1.546 1.989 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 203 5.207 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 58 40.938 24.828 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 290 12.526 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 14.582 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 260 0.104 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1163 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 823 0.253 0.300 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1113 0.331 0.500 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 190 0.283 0.700 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 82 0.288 0.300 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 38 0.760 0.700 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1041 1.160 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1652 1.945 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 634 2.941 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 531 4.892 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.650 _refine_ls_shell.d_res_low 1.693 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1501 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.302 _refine_ls_shell.R_factor_R_free 0.315 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 79 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1580 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2NPH _struct.title 'Crystal structure of HIV1 protease in situ product complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NPH _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'anti-parallel beta sheet, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 UNP Q72874_9HIV1 Q72874 1 ;PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; ? 2 2 PDB 2NPH 2NPH ? ? ? 3 3 PDB 2NPH 2NPH ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2NPH A 1 ? 99 ? Q72874 1 ? 99 ? 1 99 2 1 2NPH B 1 ? 99 ? Q72874 1 ? 99 ? 1001 1099 3 2 2NPH S 1 ? 4 ? 2NPH 1 ? 4 ? 1 4 4 3 2NPH T 1 ? 5 ? 2NPH 5 ? 9 ? 5 9 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2NPH MET A 95 ? UNP Q72874 CYS 95 'engineered mutation' 95 1 2 2NPH MET B 95 ? UNP Q72874 CYS 95 'engineered mutation' 1095 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5480 ? 1 MORE -26 ? 1 'SSA (A^2)' 9140 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The functional dimer is in the asymmetric unit.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLN A 92 ? GLY A 94 ? GLN A 92 GLY A 94 5 ? 3 HELX_P HELX_P3 3 GLY B 86 ? THR B 91 ? GLY B 1086 THR B 1091 1 ? 6 HELX_P HELX_P4 4 GLN B 92 ? GLY B 94 ? GLN B 1092 GLY B 1094 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 3 ? THR A 4 ? VAL A 3 THR A 4 A 2 THR B 96 ? ASN B 98 ? THR B 1096 ASN B 1098 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? THR B 4 ? GLN B 1002 THR B 1004 B 1 LYS A 43 ? GLY A 49 ? LYS A 43 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? LEU A 33 ? VAL A 32 LEU A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 1043 GLY B 1049 C 2 GLY B 52 ? ILE B 66 ? GLY B 1052 ILE B 1066 C 3 HIS B 69 ? VAL B 77 ? HIS B 1069 VAL B 1077 C 4 VAL B 32 ? LEU B 33 ? VAL B 1032 LEU B 1033 C 5 ILE B 84 ? ILE B 85 ? ILE B 1084 ILE B 1085 C 6 GLN B 18 ? LEU B 24 ? GLN B 1018 LEU B 1024 C 7 LEU B 10 ? ILE B 15 ? LEU B 1010 ILE B 1015 C 8 GLY B 52 ? ILE B 66 ? GLY B 1052 ILE B 1066 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 3 ? N VAL A 3 O LEU B 97 ? O LEU B 1097 A 2 3 O THR B 96 ? O THR B 1096 N ASN A 98 ? N ASN A 98 A 3 4 N LEU A 97 ? N LEU A 97 O VAL B 3 ? O VAL B 1003 B 1 2 N LYS A 45 ? N LYS A 45 O VAL A 56 ? O VAL A 56 B 2 3 N ILE A 66 ? N ILE A 66 O HIS A 69 ? O HIS A 69 B 3 4 O LEU A 76 ? O LEU A 76 N LEU A 33 ? N LEU A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O ALA A 22 ? O ALA A 22 N VAL A 11 ? N VAL A 11 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N GLY B 49 ? N GLY B 1049 O GLY B 52 ? O GLY B 1052 C 2 3 N ARG B 57 ? N ARG B 1057 O VAL B 77 ? O VAL B 1077 C 3 4 O LEU B 76 ? O LEU B 1076 N LEU B 33 ? N LEU B 1033 C 4 5 N VAL B 32 ? N VAL B 1032 O ILE B 84 ? O ILE B 1084 C 5 6 O ILE B 85 ? O ILE B 1085 N LEU B 23 ? N LEU B 1023 C 6 7 O LYS B 20 ? O LYS B 1020 N ILE B 13 ? N ILE B 1013 C 7 8 N LYS B 14 ? N LYS B 1014 O GLU B 65 ? O GLU B 1065 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 319 ? ? O B HOH 373 ? ? 1.21 2 1 O B HOH 330 ? ? O B HOH 381 ? ? 1.30 3 1 O A HOH 468 ? ? O A HOH 469 ? ? 1.37 4 1 NZ A LYS 20 ? ? O A HOH 399 ? ? 1.56 5 1 O A HOH 409 ? ? O A HOH 424 ? ? 1.58 6 1 O B HOH 391 ? ? O B HOH 463 ? ? 1.72 7 1 O A HOH 310 ? ? O A HOH 370 ? ? 1.87 8 1 O A GLU 35 ? ? O A HOH 406 ? ? 1.96 9 1 SG B CYS 1067 ? ? O B HOH 488 ? ? 1.98 10 1 O B MET 1095 ? ? O B HOH 395 ? ? 2.11 11 1 O A HOH 455 ? ? O B HOH 458 ? ? 2.11 12 1 O A TRP 42 ? ? O A HOH 421 ? ? 2.11 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 316 ? ? 1_555 O B HOH 475 ? ? 6_665 1.16 2 1 O A HOH 345 ? ? 1_555 O B HOH 395 ? ? 2_665 1.34 3 1 O A HOH 447 ? ? 1_555 O B HOH 494 ? ? 2_565 1.44 4 1 O A HOH 344 ? ? 1_555 O B HOH 393 ? ? 2_665 1.52 5 1 O A HOH 398 ? ? 1_555 O A HOH 500 ? ? 2_665 1.69 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 79 ? ? -71.48 48.73 2 1 PRO B 1044 ? ? -48.15 155.62 3 1 PRO B 1079 ? ? -75.07 42.32 4 1 THR S 3 ? ? -100.00 72.04 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -11.3595 19.7577 27.6314 -0.0561 -0.0027 -0.0374 -0.0396 -0.0121 -0.0068 2.8083 1.1209 1.8569 1.5143 2.2714 1.3023 0.0014 0.0283 -0.0297 -0.0063 -0.0667 -0.0373 -0.0113 0.0012 0.0131 'X-RAY DIFFRACTION' 2 ? refined 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 'X-RAY DIFFRACTION' 3 ? refined -8.1150 14.9498 26.8550 -0.0009 0.0004 -0.0018 -0.0007 -0.0007 -0.0019 10.5838 12.4109 23.3387 11.4536 -14.3140 -15.7430 -0.2695 0.2070 0.0625 0.0426 -1.3048 -1.1424 -0.2896 0.1841 0.4474 'X-RAY DIFFRACTION' 4 ? refined 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 99 ALL A 1 A 99 'X-RAY DIFFRACTION' ? 2 1 B 1 B 99 ALL B 1001 B 1099 'X-RAY DIFFRACTION' ? 3 3 C 1 C 4 ALL S 1 S 4 'X-RAY DIFFRACTION' ? 4 3 D 1 D 5 ALL T 5 T 9 'X-RAY DIFFRACTION' ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 2NPH _atom_sites.fract_transf_matrix[1][1] 0.016121 _atom_sites.fract_transf_matrix[1][2] 0.009308 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018615 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012228 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_