HEADER BIOSYNTHETIC PROTEIN 31-OCT-06 2NQV TITLE MOEA D228A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MOEA, BISB, CHLE, NARE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: AH69 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS MOLYBDOPTERIN, MPT, MOCO, MOLYBDENUM, MOEA, MOGA, GEPHYRIN, CNX1, KEYWDS 2 CINNAMON, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.NCIOLAS,S.XIANG,H.SCHINDELIN,K.V.RAJAGOPALAN REVDAT 5 27-DEC-23 2NQV 1 REMARK REVDAT 4 20-OCT-21 2NQV 1 REMARK SEQADV REVDAT 3 13-JUL-11 2NQV 1 VERSN REVDAT 2 24-FEB-09 2NQV 1 VERSN REVDAT 1 16-JAN-07 2NQV 0 JRNL AUTH J.D.NICHOLS,S.XIANG,H.SCHINDELIN,K.V.RAJAGOPALAN JRNL TITL MUTATIONAL ANALYSIS OF ESCHERICHIA COLI MOEA: TWO FUNCTIONAL JRNL TITL 2 ACTIVITIES MAP TO THE ACTIVE SITE CLEFT. JRNL REF BIOCHEMISTRY V. 46 78 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17198377 JRNL DOI 10.1021/BI061551Q REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 73.4 REMARK 3 NUMBER OF REFLECTIONS : 18538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.319 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 997 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1163 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.5090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6087 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.92000 REMARK 3 B22 (A**2) : -9.62000 REMARK 3 B33 (A**2) : -5.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.584 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.406 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.998 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.848 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6246 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5814 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8474 ; 1.659 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13494 ; 0.902 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 806 ; 6.912 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 966 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7018 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1230 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1591 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 7258 ; 0.240 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 4142 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 138 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.260 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 66 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.266 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4005 ; 0.910 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6435 ; 1.747 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2241 ; 2.060 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2039 ; 3.731 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4479 79.2656 66.4616 REMARK 3 T TENSOR REMARK 3 T11: 0.1687 T22: 0.1687 REMARK 3 T33: 0.1687 T12: 0.0000 REMARK 3 T13: 0.0001 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 3.6822 L22: 13.9507 REMARK 3 L33: 2.9732 L12: 2.0726 REMARK 3 L13: 0.9273 L23: 11.9105 REMARK 3 S TENSOR REMARK 3 S11: -0.0852 S12: -0.1425 S13: 0.4149 REMARK 3 S21: -0.0757 S22: -0.0476 S23: 0.1929 REMARK 3 S31: 0.1731 S32: 0.0162 S33: 0.1328 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 53 B 140 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7963 -6.7599 66.7746 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.1159 REMARK 3 T33: 0.1733 T12: -0.0044 REMARK 3 T13: 0.1583 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 1.6791 L22: 4.2732 REMARK 3 L33: 0.8205 L12: 1.0295 REMARK 3 L13: -0.6829 L23: 1.6849 REMARK 3 S TENSOR REMARK 3 S11: 0.1634 S12: 0.0542 S13: -0.1737 REMARK 3 S21: 0.2559 S22: 0.2715 S23: -0.6306 REMARK 3 S31: -0.0225 S32: -0.0167 S33: -0.4349 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 52 REMARK 3 RESIDUE RANGE : B 7 B 52 REMARK 3 RESIDUE RANGE : A 141 A 411 REMARK 3 RESIDUE RANGE : B 141 B 409 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4477 37.7979 60.0887 REMARK 3 T TENSOR REMARK 3 T11: 0.0747 T22: 0.1680 REMARK 3 T33: 0.0894 T12: -0.0058 REMARK 3 T13: 0.0143 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.1868 L22: 0.9234 REMARK 3 L33: 0.3094 L12: 0.2321 REMARK 3 L13: 0.1171 L23: 0.3429 REMARK 3 S TENSOR REMARK 3 S11: 0.0834 S12: -0.0029 S13: -0.0901 REMARK 3 S21: 0.1609 S22: 0.0631 S23: -0.1210 REMARK 3 S31: 0.0683 S32: 0.0006 S33: -0.1465 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NQV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 73.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10%-15% PEG 6000/8000, 0.2-0.5 M REMARK 280 CALCIUM ACETATE, 0.1 M CACODYLIC ACID, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.83550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.44100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.06350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.44100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.83550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.06350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER OF CHAINS A AND B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 PHE A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 PHE B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 410 REMARK 465 LEU B 411 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 409 O HOH B 914 2.08 REMARK 500 O ASN A 291 O2 GOL A 905 2.16 REMARK 500 OD1 ASP B 259 OG1 THR B 261 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 59 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 142 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 229 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 259 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 358 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 11 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 38 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP B 49 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 25 -8.67 -148.32 REMARK 500 ILE A 68 -64.33 -148.90 REMARK 500 SER A 70 -32.70 -35.83 REMARK 500 PHE A 81 -133.33 -118.53 REMARK 500 ALA A 82 -124.66 -66.83 REMARK 500 GLU A 89 120.27 18.89 REMARK 500 THR A 100 129.74 -29.61 REMARK 500 CYS A 108 170.97 -58.64 REMARK 500 GLU A 109 -20.82 -141.35 REMARK 500 ASN A 122 -7.23 -150.56 REMARK 500 THR A 127 -74.00 -115.97 REMARK 500 VAL A 130 96.63 51.46 REMARK 500 ARG A 131 172.33 -48.91 REMARK 500 GLN A 194 151.84 -41.49 REMARK 500 ASP A 198 -88.62 -78.98 REMARK 500 ASP A 259 169.53 164.90 REMARK 500 LYS A 282 -65.18 151.85 REMARK 500 PHE A 286 124.83 -172.26 REMARK 500 LEU A 289 -169.61 -104.81 REMARK 500 ALA A 324 -166.34 -76.65 REMARK 500 LEU A 327 115.10 174.78 REMARK 500 PRO A 328 157.59 -39.59 REMARK 500 PRO A 343 155.98 -48.56 REMARK 500 VAL A 399 143.53 -170.15 REMARK 500 PHE A 404 -169.37 -50.73 REMARK 500 PHE B 53 134.73 179.90 REMARK 500 MET B 58 159.76 179.56 REMARK 500 ASP B 67 -82.68 -68.94 REMARK 500 ILE B 68 -55.86 -15.73 REMARK 500 SER B 70 -83.19 -19.78 REMARK 500 PRO B 73 -170.37 -52.39 REMARK 500 LEU B 74 134.14 -175.24 REMARK 500 PRO B 75 -162.11 -54.51 REMARK 500 VAL B 76 33.86 -146.35 REMARK 500 ALA B 77 -10.29 -32.39 REMARK 500 ALA B 82 -70.57 -42.84 REMARK 500 TRP B 90 82.02 55.05 REMARK 500 THR B 94 -163.80 -127.87 REMARK 500 MET B 99 -144.90 -69.42 REMARK 500 ALA B 110 162.82 172.84 REMARK 500 ASP B 121 -36.81 -38.48 REMARK 500 ARG B 139 108.80 -55.07 REMARK 500 PRO B 192 142.99 -39.24 REMARK 500 ASP B 198 -97.94 -76.10 REMARK 500 ASP B 259 172.65 168.84 REMARK 500 LYS B 282 -51.82 174.36 REMARK 500 ASN B 291 30.61 -146.10 REMARK 500 ALA B 324 -148.16 -67.87 REMARK 500 LEU B 327 111.84 -164.07 REMARK 500 PRO B 328 158.14 -30.41 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 908 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G8R RELATED DB: PDB REMARK 900 RELATED ID: 1G8L RELATED DB: PDB REMARK 900 RELATED ID: 1FC5 RELATED DB: PDB REMARK 900 RELATED ID: 1UZ5 RELATED DB: PDB REMARK 900 RELATED ID: 1WU2 RELATED DB: PDB REMARK 900 RELATED ID: 2NQK RELATED DB: PDB REMARK 900 RELATED ID: 2NQM RELATED DB: PDB REMARK 900 RELATED ID: 2NQN RELATED DB: PDB REMARK 900 RELATED ID: 2NQQ RELATED DB: PDB REMARK 900 RELATED ID: 2NQR RELATED DB: PDB REMARK 900 RELATED ID: 2NQS RELATED DB: PDB REMARK 900 RELATED ID: 2NQU RELATED DB: PDB REMARK 900 RELATED ID: 2NRO RELATED DB: PDB REMARK 900 RELATED ID: 2NRP RELATED DB: PDB REMARK 900 RELATED ID: 2NRS RELATED DB: PDB DBREF 2NQV A 1 411 UNP P12281 MOEA_ECOLI 1 411 DBREF 2NQV B 1 411 UNP P12281 MOEA_ECOLI 1 411 SEQADV 2NQV ALA A 228 UNP P12281 ASP 228 ENGINEERED MUTATION SEQADV 2NQV ALA B 228 UNP P12281 ASP 228 ENGINEERED MUTATION SEQRES 1 A 411 MET GLU PHE THR THR GLY LEU MET SER LEU ASP THR ALA SEQRES 2 A 411 LEU ASN GLU MET LEU SER ARG VAL THR PRO LEU THR ALA SEQRES 3 A 411 GLN GLU THR LEU PRO LEU VAL GLN CYS PHE GLY ARG ILE SEQRES 4 A 411 LEU ALA SER ASP VAL VAL SER PRO LEU ASP VAL PRO GLY SEQRES 5 A 411 PHE ASP ASN SER ALA MET ASP GLY TYR ALA VAL ARG LEU SEQRES 6 A 411 ALA ASP ILE ALA SER GLY GLN PRO LEU PRO VAL ALA GLY SEQRES 7 A 411 LYS SER PHE ALA GLY GLN PRO TYR HIS GLY GLU TRP PRO SEQRES 8 A 411 ALA GLY THR CYS ILE ARG ILE MET THR GLY ALA PRO VAL SEQRES 9 A 411 PRO GLU GLY CYS GLU ALA VAL VAL MET GLN GLU GLN THR SEQRES 10 A 411 GLU GLN MET ASP ASN GLY VAL ARG PHE THR ALA GLU VAL SEQRES 11 A 411 ARG SER GLY GLN ASN ILE ARG ARG ARG GLY GLU ASP ILE SEQRES 12 A 411 SER ALA GLY ALA VAL VAL PHE PRO ALA GLY THR ARG LEU SEQRES 13 A 411 THR THR ALA GLU LEU PRO VAL ILE ALA SER LEU GLY ILE SEQRES 14 A 411 ALA GLU VAL PRO VAL ILE ARG LYS VAL ARG VAL ALA LEU SEQRES 15 A 411 PHE SER THR GLY ASP GLU LEU GLN LEU PRO GLY GLN PRO SEQRES 16 A 411 LEU GLY ASP GLY GLN ILE TYR ASP THR ASN ARG LEU ALA SEQRES 17 A 411 VAL HIS LEU MET LEU GLU GLN LEU GLY CYS GLU VAL ILE SEQRES 18 A 411 ASN LEU GLY ILE ILE ARG ALA ASP PRO HIS ALA LEU ARG SEQRES 19 A 411 ALA ALA PHE ILE GLU ALA ASP SER GLN ALA ASP VAL VAL SEQRES 20 A 411 ILE SER SER GLY GLY VAL SER VAL GLY GLU ALA ASP TYR SEQRES 21 A 411 THR LYS THR ILE LEU GLU GLU LEU GLY GLU ILE ALA PHE SEQRES 22 A 411 TRP LYS LEU ALA ILE LYS PRO GLY LYS PRO PHE ALA PHE SEQRES 23 A 411 GLY LYS LEU SER ASN SER TRP PHE CYS GLY LEU PRO GLY SEQRES 24 A 411 ASN PRO VAL SER ALA THR LEU THR PHE TYR GLN LEU VAL SEQRES 25 A 411 GLN PRO LEU LEU ALA LYS LEU SER GLY ASN THR ALA SER SEQRES 26 A 411 GLY LEU PRO ALA ARG GLN ARG VAL ARG THR ALA SER ARG SEQRES 27 A 411 LEU LYS LYS THR PRO GLY ARG LEU ASP PHE GLN ARG GLY SEQRES 28 A 411 VAL LEU GLN ARG ASN ALA ASP GLY GLU LEU GLU VAL THR SEQRES 29 A 411 THR THR GLY HIS GLN GLY SER HIS ILE PHE SER SER PHE SEQRES 30 A 411 SER LEU GLY ASN CYS PHE ILE VAL LEU GLU ARG ASP ARG SEQRES 31 A 411 GLY ASN VAL GLU VAL GLY GLU TRP VAL GLU VAL GLU PRO SEQRES 32 A 411 PHE ASN ALA LEU PHE GLY GLY LEU SEQRES 1 B 411 MET GLU PHE THR THR GLY LEU MET SER LEU ASP THR ALA SEQRES 2 B 411 LEU ASN GLU MET LEU SER ARG VAL THR PRO LEU THR ALA SEQRES 3 B 411 GLN GLU THR LEU PRO LEU VAL GLN CYS PHE GLY ARG ILE SEQRES 4 B 411 LEU ALA SER ASP VAL VAL SER PRO LEU ASP VAL PRO GLY SEQRES 5 B 411 PHE ASP ASN SER ALA MET ASP GLY TYR ALA VAL ARG LEU SEQRES 6 B 411 ALA ASP ILE ALA SER GLY GLN PRO LEU PRO VAL ALA GLY SEQRES 7 B 411 LYS SER PHE ALA GLY GLN PRO TYR HIS GLY GLU TRP PRO SEQRES 8 B 411 ALA GLY THR CYS ILE ARG ILE MET THR GLY ALA PRO VAL SEQRES 9 B 411 PRO GLU GLY CYS GLU ALA VAL VAL MET GLN GLU GLN THR SEQRES 10 B 411 GLU GLN MET ASP ASN GLY VAL ARG PHE THR ALA GLU VAL SEQRES 11 B 411 ARG SER GLY GLN ASN ILE ARG ARG ARG GLY GLU ASP ILE SEQRES 12 B 411 SER ALA GLY ALA VAL VAL PHE PRO ALA GLY THR ARG LEU SEQRES 13 B 411 THR THR ALA GLU LEU PRO VAL ILE ALA SER LEU GLY ILE SEQRES 14 B 411 ALA GLU VAL PRO VAL ILE ARG LYS VAL ARG VAL ALA LEU SEQRES 15 B 411 PHE SER THR GLY ASP GLU LEU GLN LEU PRO GLY GLN PRO SEQRES 16 B 411 LEU GLY ASP GLY GLN ILE TYR ASP THR ASN ARG LEU ALA SEQRES 17 B 411 VAL HIS LEU MET LEU GLU GLN LEU GLY CYS GLU VAL ILE SEQRES 18 B 411 ASN LEU GLY ILE ILE ARG ALA ASP PRO HIS ALA LEU ARG SEQRES 19 B 411 ALA ALA PHE ILE GLU ALA ASP SER GLN ALA ASP VAL VAL SEQRES 20 B 411 ILE SER SER GLY GLY VAL SER VAL GLY GLU ALA ASP TYR SEQRES 21 B 411 THR LYS THR ILE LEU GLU GLU LEU GLY GLU ILE ALA PHE SEQRES 22 B 411 TRP LYS LEU ALA ILE LYS PRO GLY LYS PRO PHE ALA PHE SEQRES 23 B 411 GLY LYS LEU SER ASN SER TRP PHE CYS GLY LEU PRO GLY SEQRES 24 B 411 ASN PRO VAL SER ALA THR LEU THR PHE TYR GLN LEU VAL SEQRES 25 B 411 GLN PRO LEU LEU ALA LYS LEU SER GLY ASN THR ALA SER SEQRES 26 B 411 GLY LEU PRO ALA ARG GLN ARG VAL ARG THR ALA SER ARG SEQRES 27 B 411 LEU LYS LYS THR PRO GLY ARG LEU ASP PHE GLN ARG GLY SEQRES 28 B 411 VAL LEU GLN ARG ASN ALA ASP GLY GLU LEU GLU VAL THR SEQRES 29 B 411 THR THR GLY HIS GLN GLY SER HIS ILE PHE SER SER PHE SEQRES 30 B 411 SER LEU GLY ASN CYS PHE ILE VAL LEU GLU ARG ASP ARG SEQRES 31 B 411 GLY ASN VAL GLU VAL GLY GLU TRP VAL GLU VAL GLU PRO SEQRES 32 B 411 PHE ASN ALA LEU PHE GLY GLY LEU HET GOL A 901 6 HET GOL A 903 6 HET GOL A 904 6 HET GOL A 905 6 HET GOL A 906 6 HET GOL B 902 6 HET GOL B 907 6 HET GOL B 908 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 8(C3 H8 O3) FORMUL 11 HOH *13(H2 O) HELIX 1 1 SER A 9 ARG A 20 1 12 HELIX 2 2 VAL A 33 CYS A 35 5 3 HELIX 3 3 GLU A 160 LEU A 167 1 8 HELIX 4 4 THR A 204 LEU A 216 1 13 HELIX 5 5 ASP A 229 ALA A 244 1 16 HELIX 6 6 ASP A 259 GLY A 269 1 11 HELIX 7 7 ASN A 300 GLY A 321 1 22 HELIX 8 8 SER A 375 GLY A 380 1 6 HELIX 9 9 ASN A 405 GLY A 409 5 5 HELIX 10 10 SER B 9 VAL B 21 1 13 HELIX 11 11 VAL B 33 CYS B 35 5 3 HELIX 12 12 ARG B 64 SER B 70 1 7 HELIX 13 13 GLU B 160 LEU B 167 1 8 HELIX 14 14 THR B 204 LEU B 216 1 13 HELIX 15 15 ASP B 229 ALA B 244 1 16 HELIX 16 16 ASP B 259 LEU B 268 1 10 HELIX 17 17 ASN B 300 GLY B 321 1 22 HELIX 18 18 SER B 375 GLY B 380 1 6 HELIX 19 19 ASN B 405 GLY B 409 5 5 SHEET 1 A 2 GLN A 27 PRO A 31 0 SHEET 2 A 2 GLU A 171 ILE A 175 -1 O VAL A 174 N GLU A 28 SHEET 1 B 2 VAL A 44 VAL A 45 0 SHEET 2 B 2 VAL A 148 PHE A 150 -1 O PHE A 150 N VAL A 44 SHEET 1 C 2 ASN A 55 SER A 56 0 SHEET 2 C 2 ILE A 136 ARG A 137 -1 O ARG A 137 N ASN A 55 SHEET 1 D 4 GLY A 78 SER A 80 0 SHEET 2 D 4 ILE A 96 ILE A 98 1 O ARG A 97 N GLY A 78 SHEET 3 D 4 GLY A 60 VAL A 63 -1 N ALA A 62 O ILE A 96 SHEET 4 D 4 ALA A 110 MET A 113 -1 O VAL A 112 N TYR A 61 SHEET 1 E 6 GLU A 219 ILE A 226 0 SHEET 2 E 6 ARG A 179 THR A 185 1 N VAL A 180 O GLU A 219 SHEET 3 E 6 VAL A 246 GLY A 251 1 O VAL A 246 N ALA A 181 SHEET 4 E 6 TRP A 293 GLY A 296 1 O TRP A 293 N VAL A 247 SHEET 5 E 6 PRO A 283 LYS A 288 -1 N ALA A 285 O GLY A 296 SHEET 6 E 6 GLU A 270 LYS A 275 -1 N TRP A 274 O PHE A 284 SHEET 1 F 2 LEU A 189 GLN A 190 0 SHEET 2 F 2 ILE A 201 TYR A 202 1 O ILE A 201 N GLN A 190 SHEET 1 G 7 ILE A 278 LYS A 279 0 SHEET 2 G 7 LEU A 346 ARG A 355 1 O PHE A 348 N LYS A 279 SHEET 3 G 7 CYS A 382 LEU A 386 -1 O CYS A 382 N GLY A 351 SHEET 4 G 7 TRP A 398 PRO A 403 -1 O GLU A 402 N PHE A 383 SHEET 5 G 7 GLN A 331 THR A 335 -1 N VAL A 333 O VAL A 399 SHEET 6 G 7 LEU A 361 THR A 365 1 O LEU A 361 N ARG A 334 SHEET 7 G 7 LEU A 346 ARG A 355 -1 N VAL A 352 O THR A 364 SHEET 1 H 2 GLN B 27 PRO B 31 0 SHEET 2 H 2 GLU B 171 ILE B 175 -1 O VAL B 174 N GLU B 28 SHEET 1 I 2 VAL B 44 VAL B 45 0 SHEET 2 I 2 VAL B 148 PHE B 150 -1 O VAL B 149 N VAL B 44 SHEET 1 J 2 ASN B 55 SER B 56 0 SHEET 2 J 2 ILE B 136 ARG B 137 -1 O ARG B 137 N ASN B 55 SHEET 1 K 4 GLY B 78 SER B 80 0 SHEET 2 K 4 ILE B 96 ILE B 98 1 O ARG B 97 N SER B 80 SHEET 3 K 4 GLY B 60 VAL B 63 -1 N GLY B 60 O ILE B 98 SHEET 4 K 4 ALA B 110 MET B 113 -1 O ALA B 110 N VAL B 63 SHEET 1 L 2 THR B 117 MET B 120 0 SHEET 2 L 2 GLY B 123 PHE B 126 -1 O ARG B 125 N GLU B 118 SHEET 1 M 6 GLU B 219 ILE B 226 0 SHEET 2 M 6 ARG B 179 THR B 185 1 N VAL B 180 O GLU B 219 SHEET 3 M 6 VAL B 246 GLY B 251 1 O VAL B 246 N ALA B 181 SHEET 4 M 6 TRP B 293 GLY B 296 1 O TRP B 293 N VAL B 247 SHEET 5 M 6 PRO B 283 LEU B 289 -1 N ALA B 285 O GLY B 296 SHEET 6 M 6 GLY B 269 LYS B 275 -1 N ALA B 272 O PHE B 286 SHEET 1 N 2 LEU B 189 GLN B 190 0 SHEET 2 N 2 ILE B 201 TYR B 202 1 O ILE B 201 N GLN B 190 SHEET 1 O 7 ILE B 278 LYS B 279 0 SHEET 2 O 7 LEU B 346 ARG B 355 1 O PHE B 348 N LYS B 279 SHEET 3 O 7 CYS B 382 LEU B 386 -1 O LEU B 386 N ASP B 347 SHEET 4 O 7 TRP B 398 PRO B 403 -1 O GLU B 402 N PHE B 383 SHEET 5 O 7 GLN B 331 THR B 335 -1 N VAL B 333 O VAL B 399 SHEET 6 O 7 LEU B 361 THR B 365 1 O VAL B 363 N ARG B 334 SHEET 7 O 7 LEU B 346 ARG B 355 -1 N VAL B 352 O THR B 364 CISPEP 1 VAL A 50 PRO A 51 0 1.16 CISPEP 2 LYS A 279 PRO A 280 0 -8.06 CISPEP 3 VAL B 50 PRO B 51 0 -3.79 CISPEP 4 LYS B 279 PRO B 280 0 -12.34 SITE 1 AC1 4 PHE A 404 ASN A 405 LEU A 411 PHE B 404 SITE 1 AC2 6 ASP B 241 SER B 242 GLN B 243 ALA B 244 SITE 2 AC2 6 ASP B 245 ASN B 291 SITE 1 AC3 2 ASP A 187 ALA A 228 SITE 1 AC4 4 LYS A 279 GLY A 281 ARG A 345 SER A 371 SITE 1 AC5 4 ASP A 241 ALA A 244 ASP A 245 ASN A 291 SITE 1 AC6 3 SER A 378 LEU A 379 GLY A 380 SITE 1 AC7 4 ASP B 187 LEU B 189 GLN B 190 GLN B 194 SITE 1 AC8 5 PHE B 377 SER B 378 LEU B 379 GLY B 380 SITE 2 AC8 5 PHE B 408 CRYST1 67.671 98.127 160.882 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014777 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006216 0.00000