HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-NOV-06 2NR4 TITLE CRYSTAL STRUCTURE OF FMN-BOUND PROTEIN MM1853 FROM METHANOSARCINA TITLE 2 MAZEI, PFAM DUF447 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI; SOURCE 3 ORGANISM_TAXID: 2209; SOURCE 4 GENE: MM_1853; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, FLAVOPROTEIN, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,J.GILMORE,K.T.BAIN,C.LAU,S.WASSERMAN,D.SMITH,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 7 27-DEC-23 2NR4 1 REMARK REVDAT 6 03-FEB-21 2NR4 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 14-NOV-18 2NR4 1 AUTHOR REVDAT 4 18-OCT-17 2NR4 1 REMARK REVDAT 3 24-OCT-12 2NR4 1 AUTHOR VERSN REVDAT 2 24-FEB-09 2NR4 1 VERSN REVDAT 1 07-NOV-06 2NR4 0 JRNL AUTH J.B.BONANNO,J.GILMORE,K.T.BAIN,C.LAU,S.WASSERMAN,D.SMITH, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF CONSERVED FMN BOUND HYPOTHETICAL JRNL TITL 2 PROTEIN FROM METHANOSARCINA MAZEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2677 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3632 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 0.47000 REMARK 3 B12 (A**2) : -0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.832 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3086 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4184 ; 1.582 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 367 ; 8.341 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;32.310 ;23.957 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 516 ;15.816 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.424 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2304 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1378 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2118 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 232 ; 0.203 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.159 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1911 ; 1.303 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2989 ; 2.130 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1405 ; 2.656 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1195 ; 4.070 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NR4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040200. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52554 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 120.666 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.50 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 33.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.50 REMARK 200 R MERGE FOR SHELL (I) : 0.91400 REMARK 200 R SYM FOR SHELL (I) : 0.91400 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.5, 8% ETHYLENE REMARK 280 GLYCOL, 20% PEG 10K, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.69550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.69550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.69550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 ILE A 2 REMARK 465 GLY A 3 REMARK 465 PHE A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 ASP A 7 REMARK 465 ARG A 8 REMARK 465 GLN A 9 REMARK 465 GLY A 10 REMARK 465 PHE A 11 REMARK 465 GLU A 12 REMARK 465 LYS A 13 REMARK 465 GLN A 14 REMARK 465 TYR A 15 REMARK 465 HIS A 16 REMARK 465 ASP A 17 REMARK 465 ILE A 18 REMARK 465 ALA A 104 REMARK 465 GLY A 211 REMARK 465 LEU A 212 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 ILE B 2 REMARK 465 GLY B 3 REMARK 465 PHE B 4 REMARK 465 LEU B 5 REMARK 465 SER B 6 REMARK 465 ASP B 7 REMARK 465 ARG B 8 REMARK 465 GLN B 9 REMARK 465 GLY B 10 REMARK 465 PHE B 11 REMARK 465 GLU B 12 REMARK 465 LYS B 13 REMARK 465 GLN B 14 REMARK 465 TYR B 15 REMARK 465 HIS B 16 REMARK 465 ASP B 17 REMARK 465 ILE B 18 REMARK 465 SER B 92 REMARK 465 ASP B 93 REMARK 465 ASP B 130 REMARK 465 GLN B 131 REMARK 465 LEU B 174 REMARK 465 THR B 175 REMARK 465 GLY B 176 REMARK 465 GLU B 177 REMARK 465 GLU B 178 REMARK 465 LYS B 179 REMARK 465 GLY B 211 REMARK 465 LEU B 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 570 O HOH B 586 1.97 REMARK 500 O HOH A 488 O HOH A 529 2.00 REMARK 500 OH TYR B 187 O HOH B 597 2.03 REMARK 500 O HOH A 446 O HOH A 477 2.09 REMARK 500 O HOH A 462 O HOH A 516 2.15 REMARK 500 NE ARG A 171 O HOH A 531 2.15 REMARK 500 OD1 ASP B 103 NZ LYS B 108 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 175 N - CA - CB ANGL. DEV. = 12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 53 -139.51 -128.67 REMARK 500 PHE A 107 150.45 90.02 REMARK 500 ASP A 130 -119.11 70.80 REMARK 500 THR A 175 -30.61 -147.41 REMARK 500 HIS B 40 108.96 -164.21 REMARK 500 GLU B 53 -144.26 -105.86 REMARK 500 ASN B 145 78.79 -112.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 174 THR A 175 -114.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IML RELATED DB: PDB REMARK 900 RELATED ID: NYSGXRC-10069F RELATED DB: TARGETDB DBREF 2NR4 A 2 212 UNP Q8PVV4 Q8PVV4_METMA 2 212 DBREF 2NR4 B 2 212 UNP Q8PVV4 Q8PVV4_METMA 2 212 SEQADV 2NR4 SER A 0 UNP Q8PVV4 CLONING ARTIFACT SEQADV 2NR4 LEU A 1 UNP Q8PVV4 CLONING ARTIFACT SEQADV 2NR4 SER B 0 UNP Q8PVV4 CLONING ARTIFACT SEQADV 2NR4 LEU B 1 UNP Q8PVV4 CLONING ARTIFACT SEQRES 1 A 213 SER LEU ILE GLY PHE LEU SER ASP ARG GLN GLY PHE GLU SEQRES 2 A 213 LYS GLN TYR HIS ASP ILE ASP LEU SER SER PHE GLY ILE SEQRES 3 A 213 ARG GLU GLY ILE SER GLU ILE ILE ALA SER THR GLY PHE SEQRES 4 A 213 GLU HIS PRO ASN ALA ALA PRO ILE GLY ILE VAL MET LYS SEQRES 5 A 213 GLY GLU ARG PRO PHE VAL ARG LEU PHE LYS GLY SER HIS SEQRES 6 A 213 THR TRP GLU ASN VAL LEU LYS GLU LYS CYS LEU ALA SER SEQRES 7 A 213 ASN VAL VAL TYR ASP PRO ILE LEU PHE VAL ARG SER THR SEQRES 8 A 213 PHE SER ASP LEU VAL PRO SER GLU PHE GLU TYR VAL ASP SEQRES 9 A 213 ALA GLY GLU PHE LYS PHE PRO VAL LEU LYS GLU ALA ILE SEQRES 10 A 213 ALA TRP VAL VAL PHE GLU CYS ILE ASN LEU ARG ASN THR SEQRES 11 A 213 ASP GLN SER LEU VAL ALA ASP LEU VAL PRO LEU ASN ALA SEQRES 12 A 213 GLY PHE ASN GLU ARG ASN ILE LYS GLU LEU PRO VAL PRO SEQRES 13 A 213 ASN ARG GLY PHE ASN ALA VAL LEU GLU ALA THR VAL HIS SEQRES 14 A 213 ALA THR ARG TYR GLN LEU THR GLY GLU GLU LYS TYR LEU SEQRES 15 A 213 GLU LEU ILE ARG HIS TYR GLU SER LEU ALA SER LYS CYS SEQRES 16 A 213 GLY GLY ASP ALA GLU LYS LYS ALA MET LYS LEU ILE TYR SEQRES 17 A 213 GLU ALA LEU GLY LEU SEQRES 1 B 213 SER LEU ILE GLY PHE LEU SER ASP ARG GLN GLY PHE GLU SEQRES 2 B 213 LYS GLN TYR HIS ASP ILE ASP LEU SER SER PHE GLY ILE SEQRES 3 B 213 ARG GLU GLY ILE SER GLU ILE ILE ALA SER THR GLY PHE SEQRES 4 B 213 GLU HIS PRO ASN ALA ALA PRO ILE GLY ILE VAL MET LYS SEQRES 5 B 213 GLY GLU ARG PRO PHE VAL ARG LEU PHE LYS GLY SER HIS SEQRES 6 B 213 THR TRP GLU ASN VAL LEU LYS GLU LYS CYS LEU ALA SER SEQRES 7 B 213 ASN VAL VAL TYR ASP PRO ILE LEU PHE VAL ARG SER THR SEQRES 8 B 213 PHE SER ASP LEU VAL PRO SER GLU PHE GLU TYR VAL ASP SEQRES 9 B 213 ALA GLY GLU PHE LYS PHE PRO VAL LEU LYS GLU ALA ILE SEQRES 10 B 213 ALA TRP VAL VAL PHE GLU CYS ILE ASN LEU ARG ASN THR SEQRES 11 B 213 ASP GLN SER LEU VAL ALA ASP LEU VAL PRO LEU ASN ALA SEQRES 12 B 213 GLY PHE ASN GLU ARG ASN ILE LYS GLU LEU PRO VAL PRO SEQRES 13 B 213 ASN ARG GLY PHE ASN ALA VAL LEU GLU ALA THR VAL HIS SEQRES 14 B 213 ALA THR ARG TYR GLN LEU THR GLY GLU GLU LYS TYR LEU SEQRES 15 B 213 GLU LEU ILE ARG HIS TYR GLU SER LEU ALA SER LYS CYS SEQRES 16 B 213 GLY GLY ASP ALA GLU LYS LYS ALA MET LYS LEU ILE TYR SEQRES 17 B 213 GLU ALA LEU GLY LEU HET FMN A 401 31 HET FMN B 501 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 HOH *227(H2 O) HELIX 1 1 ASP A 19 GLY A 24 5 6 HELIX 2 2 SER A 63 LYS A 73 1 11 HELIX 3 3 ASP A 82 SER A 92 1 11 HELIX 4 4 VAL A 95 SER A 97 5 3 HELIX 5 5 GLU A 146 ILE A 149 5 4 HELIX 6 6 ASN A 156 GLY A 176 1 21 HELIX 7 7 GLU A 177 GLY A 195 1 19 HELIX 8 8 GLY A 196 LEU A 210 1 15 HELIX 9 9 ASP B 19 GLY B 24 5 6 HELIX 10 10 SER B 63 LYS B 73 1 11 HELIX 11 11 ASP B 82 PHE B 91 1 10 HELIX 12 12 VAL B 95 SER B 97 5 3 HELIX 13 13 GLU B 146 ILE B 149 5 4 HELIX 14 14 ASN B 156 GLN B 173 1 18 HELIX 15 15 TYR B 180 GLY B 195 1 16 HELIX 16 16 GLY B 196 LEU B 210 1 15 SHEET 1 A 7 GLY A 28 THR A 36 0 SHEET 2 A 7 ASN A 42 MET A 50 -1 O ALA A 44 N ALA A 34 SHEET 3 A 7 PHE A 56 PHE A 60 -1 O PHE A 56 N VAL A 49 SHEET 4 A 7 SER A 132 PHE A 144 -1 O LEU A 133 N LEU A 59 SHEET 5 A 7 ALA A 117 THR A 129 -1 N VAL A 120 O LEU A 140 SHEET 6 A 7 CYS A 74 ASN A 78 -1 N LEU A 75 O PHE A 121 SHEET 7 A 7 GLY A 28 THR A 36 -1 N ILE A 33 O ASN A 78 SHEET 1 B 2 PHE A 99 VAL A 102 0 SHEET 2 B 2 PHE A 109 LEU A 112 -1 O VAL A 111 N GLU A 100 SHEET 1 C 7 GLY B 28 THR B 36 0 SHEET 2 C 7 ASN B 42 MET B 50 -1 O ALA B 44 N ALA B 34 SHEET 3 C 7 PHE B 56 LEU B 59 -1 O PHE B 56 N VAL B 49 SHEET 4 C 7 LEU B 133 PHE B 144 -1 O LEU B 133 N LEU B 59 SHEET 5 C 7 ALA B 117 ARG B 127 -1 N VAL B 120 O LEU B 140 SHEET 6 C 7 CYS B 74 VAL B 79 -1 N LEU B 75 O PHE B 121 SHEET 7 C 7 GLY B 28 THR B 36 -1 N SER B 35 O ALA B 76 SHEET 1 D 2 PHE B 99 ALA B 104 0 SHEET 2 D 2 PHE B 107 LEU B 112 -1 O PHE B 107 N ALA B 104 SITE 1 AC1 20 GLU A 31 ASN A 42 ALA A 44 PRO A 45 SITE 2 AC1 20 ILE A 46 GLY A 47 ARG A 58 LEU A 59 SITE 3 AC1 20 PHE A 60 SER A 63 HIS A 64 THR A 65 SITE 4 AC1 20 THR A 90 THR A 166 VAL A 167 HOH A 412 SITE 5 AC1 20 HOH A 466 HOH A 487 HOH A 528 HOH A 530 SITE 1 AC2 23 GLU B 31 ASN B 42 ALA B 44 PRO B 45 SITE 2 AC2 23 ILE B 46 GLY B 47 ARG B 58 LEU B 59 SITE 3 AC2 23 PHE B 60 SER B 63 HIS B 64 THR B 65 SITE 4 AC2 23 THR B 90 LEU B 163 THR B 166 VAL B 167 SITE 5 AC2 23 THR B 170 HOH B 524 HOH B 536 HOH B 557 SITE 6 AC2 23 HOH B 564 HOH B 594 HOH B 595 CRYST1 139.334 139.334 55.391 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007177 0.004144 0.000000 0.00000 SCALE2 0.000000 0.008287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018053 0.00000