HEADER HYDROLASE 02-NOV-06 2NRV TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL HALF OF UVRC COMPND MOL_ID: 1; COMPND 2 MOLECULE: UVRABC SYSTEM PROTEIN C; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: THE RNASE H ANDONUCLASE AND HELIX HAIRPIN HELIX DOMAINS COMPND 5 (RESIDUES 339-557); COMPND 6 SYNONYM: PROTEIN UVRC, EXCINUCLEASE ABC SUBUNIT C; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: UVRC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (CE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTXB1 KEYWDS UVRC, RNASE H, ENDONUCLASE, HELIX HAIRPIN HELIX, UVRABC, NER, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.KARAKAS,J.J.TRUGLIO,C.KISKER REVDAT 4 30-AUG-23 2NRV 1 REMARK SEQADV LINK REVDAT 3 18-OCT-17 2NRV 1 REMARK REVDAT 2 24-FEB-09 2NRV 1 VERSN REVDAT 1 06-FEB-07 2NRV 0 JRNL AUTH E.KARAKAS,J.J.TRUGLIO,D.CROTEAU,B.RHAU,L.WANG,B.VAN HOUTEN, JRNL AUTH 2 C.KISKER JRNL TITL STRUCTURE OF THE C-TERMINAL HALF OF UVRC REVEALS AN RNASE H JRNL TITL 2 ENDONUCLEASE DOMAIN WITH AN ARGONAUTE-LIKE CATALYTIC TRIAD. JRNL REF EMBO J. V. 26 613 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17245438 JRNL DOI 10.1038/SJ.EMBOJ.7601497 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 42118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2186 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2922 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 396 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.97000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : 0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.307 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.363 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3573 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4802 ; 1.574 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 5.925 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;33.284 ;22.601 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 691 ;14.287 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;19.614 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2663 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1765 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2452 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 355 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.103 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 77 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.197 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2149 ; 1.643 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3483 ; 2.625 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1438 ; 4.046 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1319 ; 6.090 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 340 A 494 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3506 17.9657 16.5256 REMARK 3 T TENSOR REMARK 3 T11: -0.0156 T22: -0.0353 REMARK 3 T33: -0.0163 T12: -0.0109 REMARK 3 T13: 0.0049 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.3042 L22: 0.3969 REMARK 3 L33: 0.6359 L12: 0.0849 REMARK 3 L13: 0.3663 L23: 0.2422 REMARK 3 S TENSOR REMARK 3 S11: 0.0680 S12: 0.0171 S13: 0.0051 REMARK 3 S21: -0.0009 S22: -0.0392 S23: 0.0423 REMARK 3 S31: 0.0141 S32: 0.0283 S33: -0.0288 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 340 B 494 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3140 3.0350 51.5174 REMARK 3 T TENSOR REMARK 3 T11: -0.0203 T22: -0.0187 REMARK 3 T33: -0.0128 T12: 0.0039 REMARK 3 T13: 0.0026 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.1453 L22: 0.1942 REMARK 3 L33: 0.2939 L12: 0.0307 REMARK 3 L13: 0.1078 L23: 0.0622 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: -0.0066 S13: -0.0555 REMARK 3 S21: -0.0024 S22: 0.0172 S23: 0.0075 REMARK 3 S31: -0.0027 S32: 0.0130 S33: -0.0195 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 560 A 746 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5702 9.2034 37.4338 REMARK 3 T TENSOR REMARK 3 T11: -0.0025 T22: -0.0043 REMARK 3 T33: -0.0018 T12: -0.0038 REMARK 3 T13: -0.0001 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.0318 L22: 0.0562 REMARK 3 L33: 0.0669 L12: -0.0106 REMARK 3 L13: -0.0116 L23: 0.0141 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.0003 S13: -0.0168 REMARK 3 S21: 0.0054 S22: -0.0130 S23: 0.0155 REMARK 3 S31: 0.0009 S32: 0.0194 S33: -0.0027 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 495 A 557 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5880 -12.9248 28.0671 REMARK 3 T TENSOR REMARK 3 T11: -0.0128 T22: -0.0339 REMARK 3 T33: -0.0428 T12: 0.0213 REMARK 3 T13: -0.0192 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.8787 L22: 2.7022 REMARK 3 L33: 1.7404 L12: -1.6481 REMARK 3 L13: -0.4060 L23: 0.5855 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: 0.0249 S13: -0.0292 REMARK 3 S21: -0.0096 S22: -0.0145 S23: 0.0478 REMARK 3 S31: 0.0008 S32: -0.0196 S33: 0.0222 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 495 B 554 REMARK 3 ORIGIN FOR THE GROUP (A): 57.7122 32.1314 52.0845 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.0538 REMARK 3 T33: -0.0176 T12: -0.1372 REMARK 3 T13: 0.0845 T23: -0.0611 REMARK 3 L TENSOR REMARK 3 L11: 3.6774 L22: 1.9444 REMARK 3 L33: 0.2278 L12: 2.0431 REMARK 3 L13: -0.6144 L23: -0.6596 REMARK 3 S TENSOR REMARK 3 S11: 0.4418 S12: -0.4694 S13: 0.2969 REMARK 3 S21: 0.4161 S22: -0.2761 S23: 0.3343 REMARK 3 S31: -0.1557 S32: 0.1599 S33: -0.1658 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-05; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X26C; X12B REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0047; 1.0047 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111); NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42358 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2NRR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3000, 0.1 M CHES (PH 9.5), REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.74950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.17600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.17600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.74950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 339 REMARK 465 GLY A 558 REMARK 465 MET B 339 REMARK 465 ASN B 510 REMARK 465 ASP B 555 REMARK 465 ILE B 556 REMARK 465 LEU B 557 REMARK 465 GLY B 558 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 552 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 482 O HOH B 763 2.02 REMARK 500 O HOH B 688 O HOH B 766 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR B 361 O HOH A 741 2655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 484 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 484 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 484 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 489 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 489 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 542 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 374 -81.46 -124.87 REMARK 500 GLN A 400 138.03 -178.23 REMARK 500 ASP A 404 83.09 -155.46 REMARK 500 LYS A 456 101.76 -45.28 REMARK 500 LYS A 457 -7.98 58.12 REMARK 500 GLU A 459 65.56 -23.60 REMARK 500 ASP B 358 122.26 103.67 REMARK 500 LYS B 389 77.92 -111.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 559 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 368 O REMARK 620 2 HOH B 569 O 83.6 REMARK 620 3 HOH B 601 O 89.0 107.8 REMARK 620 4 HOH B 607 O 91.9 88.6 163.6 REMARK 620 5 HOH B 681 O 91.8 168.2 82.9 80.7 REMARK 620 6 HOH B 764 O 166.1 82.8 97.9 84.9 101.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 559 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NRR RELATED DB: PDB REMARK 900 ENDONUCLASE DOMAIN OF THE SAME PROTEIN REMARK 900 RELATED ID: 2NRT RELATED DB: PDB REMARK 900 THE SAME FRAGMENT OF THE PROTEIN CRYSTALLIZED IN DIFFERENT CRYSTAL REMARK 900 FORM REMARK 900 RELATED ID: 1YCZ RELATED DB: PDB REMARK 900 THE N TERMINAL ENDONUCLASE DOMAIN OF THE SAME PROTEIN REMARK 900 RELATED ID: 2NRW RELATED DB: PDB REMARK 900 RELATED ID: 2NRX RELATED DB: PDB REMARK 900 RELATED ID: 2NRZ RELATED DB: PDB DBREF 2NRV A 339 557 UNP Q9WYA3 UVRC_THEMA 339 557 DBREF 2NRV B 339 557 UNP Q9WYA3 UVRC_THEMA 339 557 SEQADV 2NRV GLY A 558 UNP Q9WYA3 CLONING ARTIFACT SEQADV 2NRV GLY B 558 UNP Q9WYA3 CLONING ARTIFACT SEQRES 1 A 220 MET ARG GLY LEU ARG LYS GLU ALA LEU GLU GLU LEU MET SEQRES 2 A 220 LYS LEU LEU ASN MET LYS ASP PHE PRO TYR ARG ILE GLU SEQRES 3 A 220 GLY ILE ASP ILE SER HIS LEU GLN GLY LYS TYR THR VAL SEQRES 4 A 220 ALA SER LEU VAL VAL PHE GLU ASP GLY PHE PRO LYS LYS SEQRES 5 A 220 GLY ASP TYR ARG ARG TYR LYS ILE GLU GLN ASP HIS PRO SEQRES 6 A 220 ASP ASP TYR GLU SER ILE ARG THR VAL VAL LYS ARG ARG SEQRES 7 A 220 TYR SER LYS HIS PRO LEU PRO ASN LEU LEU PHE VAL ASP SEQRES 8 A 220 GLY GLY ILE GLY GLN VAL ASN ALA ALA ILE GLU ALA LEU SEQRES 9 A 220 LYS GLU ILE GLY LYS ASP CYS PRO VAL VAL GLY LEU ALA SEQRES 10 A 220 LYS LYS GLU GLU THR VAL VAL PHE GLU ASN ARG GLU ILE SEQRES 11 A 220 HIS LEU PRO HIS ASP HIS PRO VAL LEU ARG LEU LEU VAL SEQRES 12 A 220 GLN ILE ARG ASP GLU THR HIS ARG PHE ALA VAL SER TYR SEQRES 13 A 220 HIS ARG LYS ARG ARG GLU LYS GLU SER LEU ARG SER VAL SEQRES 14 A 220 LEU ASP ASN VAL PRO GLY ILE GLY PRO ILE ARG LYS LYS SEQRES 15 A 220 LYS LEU ILE GLU HIS PHE GLY SER LEU GLU ASN ILE ARG SEQRES 16 A 220 SER ALA SER LEU GLU GLU ILE ALA ARG VAL ILE GLY SER SEQRES 17 A 220 THR GLU ILE ALA ARG ARG VAL LEU ASP ILE LEU GLY SEQRES 1 B 220 MET ARG GLY LEU ARG LYS GLU ALA LEU GLU GLU LEU MET SEQRES 2 B 220 LYS LEU LEU ASN MET LYS ASP PHE PRO TYR ARG ILE GLU SEQRES 3 B 220 GLY ILE ASP ILE SER HIS LEU GLN GLY LYS TYR THR VAL SEQRES 4 B 220 ALA SER LEU VAL VAL PHE GLU ASP GLY PHE PRO LYS LYS SEQRES 5 B 220 GLY ASP TYR ARG ARG TYR LYS ILE GLU GLN ASP HIS PRO SEQRES 6 B 220 ASP ASP TYR GLU SER ILE ARG THR VAL VAL LYS ARG ARG SEQRES 7 B 220 TYR SER LYS HIS PRO LEU PRO ASN LEU LEU PHE VAL ASP SEQRES 8 B 220 GLY GLY ILE GLY GLN VAL ASN ALA ALA ILE GLU ALA LEU SEQRES 9 B 220 LYS GLU ILE GLY LYS ASP CYS PRO VAL VAL GLY LEU ALA SEQRES 10 B 220 LYS LYS GLU GLU THR VAL VAL PHE GLU ASN ARG GLU ILE SEQRES 11 B 220 HIS LEU PRO HIS ASP HIS PRO VAL LEU ARG LEU LEU VAL SEQRES 12 B 220 GLN ILE ARG ASP GLU THR HIS ARG PHE ALA VAL SER TYR SEQRES 13 B 220 HIS ARG LYS ARG ARG GLU LYS GLU SER LEU ARG SER VAL SEQRES 14 B 220 LEU ASP ASN VAL PRO GLY ILE GLY PRO ILE ARG LYS LYS SEQRES 15 B 220 LYS LEU ILE GLU HIS PHE GLY SER LEU GLU ASN ILE ARG SEQRES 16 B 220 SER ALA SER LEU GLU GLU ILE ALA ARG VAL ILE GLY SER SEQRES 17 B 220 THR GLU ILE ALA ARG ARG VAL LEU ASP ILE LEU GLY HET NA B 559 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *396(H2 O) HELIX 1 1 ARG A 343 LEU A 354 1 12 HELIX 2 2 LYS A 390 TYR A 393 5 4 HELIX 3 3 ASP A 404 SER A 418 1 15 HELIX 4 4 GLY A 431 ILE A 445 1 15 HELIX 5 5 HIS A 474 SER A 493 1 20 HELIX 6 6 HIS A 495 ASP A 509 1 15 HELIX 7 7 GLY A 515 GLY A 527 1 13 HELIX 8 8 SER A 528 SER A 534 1 7 HELIX 9 9 SER A 536 GLY A 545 1 10 HELIX 10 10 SER A 546 LEU A 557 1 12 HELIX 11 11 ARG B 343 ASN B 355 1 13 HELIX 12 12 LYS B 390 TYR B 393 5 4 HELIX 13 13 ASP B 404 SER B 418 1 15 HELIX 14 14 GLY B 431 ILE B 445 1 15 HELIX 15 15 HIS B 474 SER B 493 1 20 HELIX 16 16 HIS B 495 ASP B 509 1 15 HELIX 17 17 GLY B 515 GLY B 527 1 13 HELIX 18 18 SER B 528 ARG B 533 1 6 HELIX 19 19 SER B 536 GLY B 545 1 10 HELIX 20 20 SER B 546 LEU B 554 1 9 SHEET 1 A 3 PHE A 387 PRO A 388 0 SHEET 2 A 3 TYR A 375 GLU A 384 -1 N GLU A 384 O PHE A 387 SHEET 3 A 3 ARG A 394 GLU A 399 -1 O TYR A 396 N ALA A 378 SHEET 1 B 7 PHE A 387 PRO A 388 0 SHEET 2 B 7 TYR A 375 GLU A 384 -1 N GLU A 384 O PHE A 387 SHEET 3 B 7 ARG A 362 LEU A 371 -1 N SER A 369 O VAL A 377 SHEET 4 B 7 LEU A 425 ASP A 429 1 O PHE A 427 N GLU A 364 SHEET 5 B 7 VAL A 451 LEU A 454 1 O VAL A 452 N LEU A 426 SHEET 6 B 7 VAL A 461 PHE A 463 -1 O VAL A 462 N GLY A 453 SHEET 7 B 7 ARG A 466 ILE A 468 -1 O ILE A 468 N VAL A 461 SHEET 1 C 3 PHE B 387 PRO B 388 0 SHEET 2 C 3 TYR B 375 GLU B 384 -1 N GLU B 384 O PHE B 387 SHEET 3 C 3 ARG B 394 ILE B 398 -1 O TYR B 396 N ALA B 378 SHEET 1 D 7 PHE B 387 PRO B 388 0 SHEET 2 D 7 TYR B 375 GLU B 384 -1 N GLU B 384 O PHE B 387 SHEET 3 D 7 ARG B 362 LEU B 371 -1 N SER B 369 O VAL B 377 SHEET 4 D 7 LEU B 425 ASP B 429 1 O PHE B 427 N GLU B 364 SHEET 5 D 7 VAL B 451 LEU B 454 1 O VAL B 452 N LEU B 426 SHEET 6 D 7 THR B 460 PHE B 463 -1 O VAL B 462 N GLY B 453 SHEET 7 D 7 ARG B 466 HIS B 469 -1 O ILE B 468 N VAL B 461 LINK O ILE B 368 NA NA B 559 1555 1555 2.35 LINK NA NA B 559 O HOH B 569 1555 1555 2.46 LINK NA NA B 559 O HOH B 601 1555 1555 2.35 LINK NA NA B 559 O HOH B 607 1555 1555 2.27 LINK NA NA B 559 O HOH B 681 1555 1555 2.35 LINK NA NA B 559 O HOH B 764 1555 1555 2.26 CISPEP 1 GLN B 372 GLY B 373 0 -11.52 SITE 1 AC1 6 ILE B 368 HOH B 569 HOH B 601 HOH B 607 SITE 2 AC1 6 HOH B 681 HOH B 764 CRYST1 35.499 94.630 132.352 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028170 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007556 0.00000