HEADER OXIDOREDUCTASE 13-NOV-06 2NVK TITLE CRYSTAL STRUCTURE OF THIOREDOXIN REDUCTASE FROM DROSOPHILA TITLE 2 MELANOGASTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: X; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: TRXR-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTYB1 KEYWDS OXIDOREDUCTASE, ROSSMANN, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.E.ECKENROTH,M.A.ROULD,R.J.HONDAL,S.J.EVERSE REVDAT 7 30-OCT-24 2NVK 1 REMARK REVDAT 6 30-AUG-23 2NVK 1 REMARK REVDAT 5 20-OCT-21 2NVK 1 REMARK SEQADV REVDAT 4 18-OCT-17 2NVK 1 REMARK REVDAT 3 13-JUL-11 2NVK 1 VERSN REVDAT 2 24-FEB-09 2NVK 1 VERSN REVDAT 1 24-APR-07 2NVK 0 JRNL AUTH B.E.ECKENROTH,M.A.ROULD,R.J.HONDAL,S.J.EVERSE JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDIES REVEAL DIFFERENCES IN THE JRNL TITL 2 CATALYTIC MECHANISMS OF MAMMALIAN AND DROSOPHILA JRNL TITL 3 MELANOGASTER THIOREDOXIN REDUCTASES. JRNL REF BIOCHEMISTRY V. 46 4694 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17385893 JRNL DOI 10.1021/BI602394P REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 21869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2201 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1153 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3670 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.70000 REMARK 3 B22 (A**2) : 1.70000 REMARK 3 B33 (A**2) : -2.55000 REMARK 3 B12 (A**2) : 0.85000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.485 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.279 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.136 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3845 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5242 ; 1.359 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 6.150 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;35.685 ;24.248 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 623 ;18.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.865 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 596 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2849 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1764 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2580 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 198 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 89 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.197 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2442 ; 0.425 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3828 ; 0.761 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1637 ; 1.120 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1414 ; 1.836 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 8 X 488 REMARK 3 RESIDUE RANGE : X 489 X 489 REMARK 3 ORIGIN FOR THE GROUP (A): 112.1530 27.2260 53.4870 REMARK 3 T TENSOR REMARK 3 T11: -0.1795 T22: -0.1558 REMARK 3 T33: -0.0899 T12: -0.0460 REMARK 3 T13: -0.0359 T23: -0.1342 REMARK 3 L TENSOR REMARK 3 L11: 1.0488 L22: 1.4127 REMARK 3 L33: 2.9474 L12: 0.2125 REMARK 3 L13: 0.3208 L23: -0.4229 REMARK 3 S TENSOR REMARK 3 S11: 0.1832 S12: -0.0093 S13: -0.2672 REMARK 3 S21: 0.1033 S22: -0.0628 S23: 0.0671 REMARK 3 S31: 0.6307 S32: -0.0278 S33: -0.1204 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 104 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : XENOCS FOX-2D MULTILAYER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22987 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.850 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1H6V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SUCCINATE, 22% PEG 6000, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 75.74350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.73053 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.75300 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 75.74350 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 43.73053 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.75300 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 75.74350 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 43.73053 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.75300 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 75.74350 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 43.73053 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.75300 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 75.74350 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 43.73053 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.75300 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 75.74350 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 43.73053 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.75300 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 87.46106 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 89.50600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 87.46106 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 89.50600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 87.46106 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 89.50600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 87.46106 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.50600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 87.46106 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 89.50600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 87.46106 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 89.50600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HEAD TO TAIL HOMODIMER. SECOND MOLECULE GENERATED BY TWO- REMARK 300 FOLD SYMMETRY AXIS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 87.46106 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 89.50600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 ALA X 2 REMARK 465 PRO X 3 REMARK 465 VAL X 4 REMARK 465 GLN X 5 REMARK 465 GLY X 6 REMARK 465 SER X 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR X 8 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR X 8 OH REMARK 470 ARG X 34 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR X 46 129.65 58.52 REMARK 500 LEU X 47 -35.85 83.05 REMARK 500 VAL X 60 29.87 -142.70 REMARK 500 ASN X 87 47.97 -77.75 REMARK 500 THR X 150 130.59 78.12 REMARK 500 ALA X 157 58.49 -142.31 REMARK 500 SER X 219 -80.33 -130.99 REMARK 500 ASP X 257 88.55 -62.79 REMARK 500 ASP X 258 -24.22 179.05 REMARK 500 THR X 270 -164.82 -74.11 REMARK 500 ALA X 284 63.02 -109.48 REMARK 500 LEU X 290 48.23 -79.30 REMARK 500 GLN X 304 67.74 -111.54 REMARK 500 LYS X 305 100.08 54.51 REMARK 500 ASP X 306 -6.52 57.18 REMARK 500 ASN X 317 -8.14 -58.12 REMARK 500 ALA X 475 -22.67 -153.66 REMARK 500 ALA X 487 70.53 41.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAP X 490 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD X 489 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP X 490 DBREF 2NVK X 1 488 UNP Q53YG2 Q53YG2_DROME 1 488 SEQADV 2NVK ASP X 90 UNP Q53YG2 GLU 90 ENGINEERED MUTATION SEQADV 2NVK SER X 274 UNP Q53YG2 ALA 274 ENGINEERED MUTATION SEQRES 1 X 488 MET ALA PRO VAL GLN GLY SER TYR ASP TYR ASP LEU ILE SEQRES 2 X 488 VAL ILE GLY GLY GLY SER ALA GLY LEU ALA CYS ALA LYS SEQRES 3 X 488 GLU ALA VAL LEU ASN GLY ALA ARG VAL ALA CYS LEU ASP SEQRES 4 X 488 PHE VAL LYS PRO THR PRO THR LEU GLY THR LYS TRP GLY SEQRES 5 X 488 VAL GLY GLY THR CYS VAL ASN VAL GLY CYS ILE PRO LYS SEQRES 6 X 488 LYS LEU MET HIS GLN ALA SER LEU LEU GLY GLU ALA VAL SEQRES 7 X 488 HIS GLU ALA ALA ALA TYR GLY TRP ASN VAL ASP ASP LYS SEQRES 8 X 488 ILE LYS PRO ASP TRP HIS LYS LEU VAL GLN SER VAL GLN SEQRES 9 X 488 ASN HIS ILE LYS SER VAL ASN TRP VAL THR ARG VAL ASP SEQRES 10 X 488 LEU ARG ASP LYS LYS VAL GLU TYR ILE ASN GLY LEU GLY SEQRES 11 X 488 SER PHE VAL ASP SER HIS THR LEU LEU ALA LYS LEU LYS SEQRES 12 X 488 SER GLY GLU ARG THR ILE THR ALA GLN THR PHE VAL ILE SEQRES 13 X 488 ALA VAL GLY GLY ARG PRO ARG TYR PRO ASP ILE PRO GLY SEQRES 14 X 488 ALA VAL GLU TYR GLY ILE THR SER ASP ASP LEU PHE SER SEQRES 15 X 488 LEU ASP ARG GLU PRO GLY LYS THR LEU VAL VAL GLY ALA SEQRES 16 X 488 GLY TYR ILE GLY LEU GLU CYS ALA GLY PHE LEU LYS GLY SEQRES 17 X 488 LEU GLY TYR GLU PRO THR VAL MET VAL ARG SER ILE VAL SEQRES 18 X 488 LEU ARG GLY PHE ASP GLN GLN MET ALA GLU LEU VAL ALA SEQRES 19 X 488 ALA SER MET GLU GLU ARG GLY ILE PRO PHE LEU ARG LYS SEQRES 20 X 488 THR VAL PRO LEU SER VAL GLU LYS GLN ASP ASP GLY LYS SEQRES 21 X 488 LEU LEU VAL LYS TYR LYS ASN VAL GLU THR GLY GLU GLU SEQRES 22 X 488 SER GLU ASP VAL TYR ASP THR VAL LEU TRP ALA ILE GLY SEQRES 23 X 488 ARG LYS GLY LEU VAL ASP ASP LEU ASN LEU PRO ASN ALA SEQRES 24 X 488 GLY VAL THR VAL GLN LYS ASP LYS ILE PRO VAL ASP SER SEQRES 25 X 488 GLN GLU ALA THR ASN VAL ALA ASN ILE TYR ALA VAL GLY SEQRES 26 X 488 ASP ILE ILE TYR GLY LYS PRO GLU LEU THR PRO VAL ALA SEQRES 27 X 488 VAL LEU ALA GLY ARG LEU LEU ALA ARG ARG LEU TYR GLY SEQRES 28 X 488 GLY SER THR GLN ARG MET ASP TYR LYS ASP VAL ALA THR SEQRES 29 X 488 THR VAL PHE THR PRO LEU GLU TYR ALA CYS VAL GLY LEU SEQRES 30 X 488 SER GLU GLU ASP ALA VAL LYS GLN PHE GLY ALA ASP GLU SEQRES 31 X 488 ILE GLU VAL PHE HIS GLY TYR TYR LYS PRO THR GLU PHE SEQRES 32 X 488 PHE ILE PRO GLN LYS SER VAL ARG TYR CYS TYR LEU LYS SEQRES 33 X 488 ALA VAL ALA GLU ARG HIS GLY ASP GLN ARG VAL TYR GLY SEQRES 34 X 488 LEU HIS TYR ILE GLY PRO VAL ALA GLY GLU VAL ILE GLN SEQRES 35 X 488 GLY PHE ALA ALA ALA LEU LYS SER GLY LEU THR ILE ASN SEQRES 36 X 488 THR LEU ILE ASN THR VAL GLY ILE HIS PRO THR THR ALA SEQRES 37 X 488 GLU GLU PHE THR ARG LEU ALA ILE THR LYS ARG SER GLY SEQRES 38 X 488 LEU ASP PRO THR PRO ALA SER HET FAD X 489 53 HET NAP X 490 39 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 HOH *121(H2 O) HELIX 1 1 GLY X 18 ASN X 31 1 14 HELIX 2 2 GLY X 55 GLY X 61 1 7 HELIX 3 3 GLY X 61 ALA X 82 1 22 HELIX 4 4 ALA X 83 GLY X 85 5 3 HELIX 5 5 ASP X 95 LYS X 121 1 27 HELIX 6 6 GLY X 169 GLY X 174 1 6 HELIX 7 7 THR X 176 PHE X 181 1 6 HELIX 8 8 GLY X 196 LEU X 209 1 14 HELIX 9 9 ASP X 226 ARG X 240 1 15 HELIX 10 10 VAL X 291 ALA X 299 5 9 HELIX 11 11 LEU X 334 GLY X 351 1 18 HELIX 12 12 SER X 378 GLY X 387 1 10 HELIX 13 13 PRO X 400 PHE X 404 5 5 HELIX 14 14 VAL X 436 SER X 450 1 15 HELIX 15 15 THR X 453 THR X 460 1 8 HELIX 16 16 THR X 467 LEU X 474 5 8 SHEET 1 A 5 GLU X 124 ILE X 126 0 SHEET 2 A 5 VAL X 35 LEU X 38 1 N CYS X 37 O GLU X 124 SHEET 3 A 5 LEU X 12 ILE X 15 1 N VAL X 14 O LEU X 38 SHEET 4 A 5 THR X 153 ILE X 156 1 O VAL X 155 N ILE X 15 SHEET 5 A 5 ILE X 321 ALA X 323 1 O TYR X 322 N PHE X 154 SHEET 1 B 3 GLY X 128 ASP X 134 0 SHEET 2 B 3 THR X 137 LEU X 142 -1 O LEU X 139 N SER X 131 SHEET 3 B 3 ARG X 147 THR X 148 -1 O THR X 148 N ALA X 140 SHEET 1 C 2 GLY X 160 PRO X 162 0 SHEET 2 C 2 ARG X 287 GLY X 289 -1 O LYS X 288 N ARG X 161 SHEET 1 D 4 PHE X 244 LEU X 245 0 SHEET 2 D 4 GLU X 212 MET X 216 1 N VAL X 215 O LEU X 245 SHEET 3 D 4 LYS X 189 VAL X 193 1 N VAL X 192 O THR X 214 SHEET 4 D 4 THR X 280 TRP X 283 1 O LEU X 282 N LEU X 191 SHEET 1 E 3 THR X 248 LYS X 255 0 SHEET 2 E 3 LEU X 261 ASN X 267 -1 O LYS X 264 N LEU X 251 SHEET 3 E 3 GLU X 273 TYR X 278 -1 O ASP X 276 N VAL X 263 SHEET 1 F 5 THR X 364 VAL X 366 0 SHEET 2 F 5 GLU X 371 GLY X 376 -1 O TYR X 372 N VAL X 366 SHEET 3 F 5 VAL X 427 GLY X 434 -1 O GLY X 434 N GLU X 371 SHEET 4 F 5 TYR X 414 GLU X 420 -1 N VAL X 418 O TYR X 428 SHEET 5 F 5 ILE X 391 TYR X 397 -1 N PHE X 394 O ALA X 417 SSBOND 1 CYS X 57 CYS X 62 1555 1555 2.06 CISPEP 1 HIS X 464 PRO X 465 0 -7.22 SITE 1 AC1 37 GLY X 16 GLY X 17 GLY X 18 SER X 19 SITE 2 AC1 37 ALA X 20 ASP X 39 PHE X 40 GLY X 55 SITE 3 AC1 37 THR X 56 CYS X 57 VAL X 60 GLY X 61 SITE 4 AC1 37 CYS X 62 LYS X 65 GLY X 128 LEU X 129 SITE 5 AC1 37 GLY X 130 ALA X 157 VAL X 158 GLY X 159 SITE 6 AC1 37 TYR X 197 ILE X 198 ARG X 287 LEU X 290 SITE 7 AC1 37 GLY X 325 ASP X 326 GLU X 333 LEU X 334 SITE 8 AC1 37 THR X 335 PRO X 336 HIS X 464 HOH X 492 SITE 9 AC1 37 HOH X 498 HOH X 514 HOH X 517 HOH X 523 SITE 10 AC1 37 HOH X 566 SITE 1 AC2 13 GLY X 194 ALA X 195 GLY X 196 ARG X 218 SITE 2 AC2 13 SER X 219 ARG X 223 ALA X 284 ILE X 285 SITE 3 AC2 13 GLY X 286 ARG X 287 HOH X 535 HOH X 570 SITE 4 AC2 13 HOH X 610 CRYST1 151.487 151.487 134.259 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006601 0.003811 0.000000 0.00000 SCALE2 0.000000 0.007622 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007448 0.00000