HEADER TRANSCRIPTION 13-NOV-06 2NVW TITLE CRYSTAL SCTUCTURE OF TRANSCRIPTIONAL REGULATOR GAL80P FROM TITLE 2 KLUYVEROMYMES LACTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOSE/LACTOSE METABOLISM REGULATORY PROTEIN GAL80; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS; SOURCE 3 ORGANISM_TAXID: 28985; SOURCE 4 GENE: GAL80; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TRANSCRIPTION, GALACTOSE METABOLISM, REPRESSOR EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,C.A.SELLICK,R.J.REECE,H.M.HOLDEN REVDAT 4 27-DEC-23 2NVW 1 SEQADV REVDAT 3 24-FEB-09 2NVW 1 VERSN REVDAT 2 30-JAN-07 2NVW 1 JRNL REVDAT 1 21-NOV-06 2NVW 0 JRNL AUTH J.B.THODEN,C.A.SELLICK,R.J.REECE,H.M.HOLDEN JRNL TITL UNDERSTANDING A TRANSCRIPTIONAL PARADIGM AT THE MOLECULAR JRNL TITL 2 LEVEL. THE STRUCTURE OF YEAST GAL80P. JRNL REF J.BIOL.CHEM. V. 282 1534 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17121853 JRNL DOI 10.1074/JBC.C600285200 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 64889 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 6514 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1970 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 64889 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 347 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.013 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.590 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924, 0.97907, 0.96411 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SAINT, D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65527 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29300 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% 2,4-MPD, 0.2M NACL, 0.1M MES, PH REMARK 280 6.25, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 56.10000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.10000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HOMO DIMER COMPRISED OF CHAINS A AND B AS DEPOSITED REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 112.20000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 137.10000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 67140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 112.20000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 GLU A 246 REMARK 465 ASN A 247 REMARK 465 ALA A 310 REMARK 465 GLY A 311 REMARK 465 PHE A 312 REMARK 465 VAL A 313 REMARK 465 GLU A 314 REMARK 465 ILE A 315 REMARK 465 ASN A 329 REMARK 465 GLY A 330 REMARK 465 SER A 331 REMARK 465 SER A 332 REMARK 465 ASN A 333 REMARK 465 GLY A 334 REMARK 465 THR A 335 REMARK 465 ASP A 336 REMARK 465 ASN A 337 REMARK 465 ASN A 338 REMARK 465 GLY A 339 REMARK 465 ALA A 340 REMARK 465 ALA A 341 REMARK 465 ALA A 342 REMARK 465 ILE A 343 REMARK 465 LYS A 344 REMARK 465 ASP A 345 REMARK 465 LYS A 346 REMARK 465 GLU A 347 REMARK 465 LYS A 348 REMARK 465 VAL A 349 REMARK 465 THR A 350 REMARK 465 LYS A 351 REMARK 465 SER A 352 REMARK 465 PRO A 353 REMARK 465 SER A 354 REMARK 465 PRO A 355 REMARK 465 SER A 356 REMARK 465 THR A 357 REMARK 465 GLY A 358 REMARK 465 THR A 359 REMARK 465 SER A 360 REMARK 465 GLU A 361 REMARK 465 GLY A 395 REMARK 465 LYS A 396 REMARK 465 PRO A 397 REMARK 465 GLU A 398 REMARK 465 SER A 399 REMARK 465 LYS A 400 REMARK 465 SER A 401 REMARK 465 SER A 402 REMARK 465 ARG A 403 REMARK 465 GLY A 404 REMARK 465 PRO A 405 REMARK 465 ASP A 406 REMARK 465 ASP A 407 REMARK 465 LEU A 408 REMARK 465 PHE A 409 REMARK 465 ALA A 410 REMARK 465 SER A 411 REMARK 465 THR A 412 REMARK 465 MET B -21 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 ASN B 2 REMARK 465 ASN B 3 REMARK 465 ASN B 4 REMARK 465 LYS B 5 REMARK 465 ARG B 6 REMARK 465 SER B 7 REMARK 465 LYS B 8 REMARK 465 LEU B 9 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 VAL B 12 REMARK 465 PRO B 13 REMARK 465 GLY B 248 REMARK 465 LYS B 249 REMARK 465 PHE B 312 REMARK 465 VAL B 313 REMARK 465 GLU B 314 REMARK 465 ILE B 315 REMARK 465 ASN B 329 REMARK 465 GLY B 330 REMARK 465 SER B 331 REMARK 465 SER B 332 REMARK 465 ASN B 333 REMARK 465 GLY B 334 REMARK 465 THR B 335 REMARK 465 ASP B 336 REMARK 465 ASN B 337 REMARK 465 ASN B 338 REMARK 465 GLY B 339 REMARK 465 ALA B 340 REMARK 465 ALA B 341 REMARK 465 ALA B 342 REMARK 465 ILE B 343 REMARK 465 LYS B 344 REMARK 465 ASP B 345 REMARK 465 LYS B 346 REMARK 465 GLU B 347 REMARK 465 LYS B 348 REMARK 465 VAL B 349 REMARK 465 THR B 350 REMARK 465 LYS B 351 REMARK 465 SER B 352 REMARK 465 PRO B 353 REMARK 465 SER B 354 REMARK 465 PRO B 355 REMARK 465 SER B 356 REMARK 465 THR B 357 REMARK 465 GLY B 358 REMARK 465 THR B 359 REMARK 465 SER B 360 REMARK 465 LYS B 396 REMARK 465 PRO B 397 REMARK 465 GLU B 398 REMARK 465 SER B 399 REMARK 465 LYS B 400 REMARK 465 SER B 401 REMARK 465 SER B 402 REMARK 465 ARG B 403 REMARK 465 GLY B 404 REMARK 465 PRO B 405 REMARK 465 ASP B 406 REMARK 465 ASP B 407 REMARK 465 LEU B 408 REMARK 465 PHE B 409 REMARK 465 ALA B 410 REMARK 465 SER B 411 REMARK 465 THR B 412 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 573 O HOH A 637 2.16 REMARK 500 O ILE A 106 OG SER A 110 2.16 REMARK 500 NE1 TRP B 185 O HOH B 530 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 76 O HOH B 601 3556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A -14 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 LEU A 52 CB - CA - C ANGL. DEV. = -11.7 DEGREES REMARK 500 ALA A 72 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 LEU A 78 CB - CG - CD2 ANGL. DEV. = -11.9 DEGREES REMARK 500 ASP A 88 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 LEU A 145 CB - CG - CD2 ANGL. DEV. = -16.5 DEGREES REMARK 500 LEU A 198 CB - CG - CD1 ANGL. DEV. = -11.7 DEGREES REMARK 500 ILE A 222 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 LEU A 244 CB - CG - CD1 ANGL. DEV. = -13.7 DEGREES REMARK 500 THR A 258 CA - CB - CG2 ANGL. DEV. = -9.2 DEGREES REMARK 500 LEU A 269 CB - CG - CD1 ANGL. DEV. = -11.7 DEGREES REMARK 500 ASP A 296 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 LEU B 0 CA - CB - CG ANGL. DEV. = -14.7 DEGREES REMARK 500 GLU B 65 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 ASP B 76 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 LEU B 107 CA - CB - CG ANGL. DEV. = -15.0 DEGREES REMARK 500 LEU B 116 CA - CB - CG ANGL. DEV. = -16.0 DEGREES REMARK 500 LEU B 135 CA - CB - CG ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG B 142 CB - CA - C ANGL. DEV. = 13.6 DEGREES REMARK 500 LEU B 145 CB - CG - CD2 ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG B 154 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU B 219 CA - CB - CG ANGL. DEV. = -21.2 DEGREES REMARK 500 LYS B 229 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 LEU B 293 CA - CB - CG ANGL. DEV. = -14.4 DEGREES REMARK 500 LEU B 304 CB - CG - CD1 ANGL. DEV. = -16.8 DEGREES REMARK 500 ARG B 435 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 LEU B 436 CB - CG - CD2 ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -12 33.74 -99.15 REMARK 500 THR A 35 -84.72 -130.80 REMARK 500 LEU A 43 46.26 -102.89 REMARK 500 SER A 111 -9.58 -52.32 REMARK 500 LEU A 151 76.19 -112.56 REMARK 500 TYR A 186 38.71 -93.46 REMARK 500 ASN A 210 -79.23 -96.22 REMARK 500 HIS B -12 37.42 -93.41 REMARK 500 SER B 15 -3.99 -48.14 REMARK 500 THR B 35 -82.75 -110.10 REMARK 500 LYS B 58 -72.57 -56.40 REMARK 500 GLU B 101 -71.89 -61.46 REMARK 500 LEU B 116 106.52 -58.88 REMARK 500 GLN B 130 -72.17 -53.32 REMARK 500 LEU B 151 68.64 -112.75 REMARK 500 ARG B 193 78.35 50.38 REMARK 500 ASP B 245 -14.90 -158.95 REMARK 500 ASN B 373 76.03 -156.52 REMARK 500 ASP B 415 -70.60 -49.10 REMARK 500 SER B 453 -13.53 -48.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 2 -16.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 2NVW A 2 457 UNP Q06433 GAL80_KLULA 2 457 DBREF 2NVW B 2 457 UNP Q06433 GAL80_KLULA 2 457 SEQADV 2NVW MET A -21 UNP Q06433 INITIATING METHIONINE SEQADV 2NVW GLY A -20 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW SER A -19 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW SER A -18 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW HIS A -17 UNP Q06433 EXPRESSION TAG SEQADV 2NVW HIS A -16 UNP Q06433 EXPRESSION TAG SEQADV 2NVW HIS A -15 UNP Q06433 EXPRESSION TAG SEQADV 2NVW HIS A -14 UNP Q06433 EXPRESSION TAG SEQADV 2NVW HIS A -13 UNP Q06433 EXPRESSION TAG SEQADV 2NVW HIS A -12 UNP Q06433 EXPRESSION TAG SEQADV 2NVW SER A -11 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW SER A -10 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW GLU A -9 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW ASN A -8 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW LEU A -7 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW TYR A -6 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW PHE A -5 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW GLN A -4 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW GLY A -3 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW HIS A -2 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW MET A -1 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW LEU A 0 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW ALA A 1 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW MET B -21 UNP Q06433 INITIATING METHIONINE SEQADV 2NVW GLY B -20 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW SER B -19 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW SER B -18 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW HIS B -17 UNP Q06433 EXPRESSION TAG SEQADV 2NVW HIS B -16 UNP Q06433 EXPRESSION TAG SEQADV 2NVW HIS B -15 UNP Q06433 EXPRESSION TAG SEQADV 2NVW HIS B -14 UNP Q06433 EXPRESSION TAG SEQADV 2NVW HIS B -13 UNP Q06433 EXPRESSION TAG SEQADV 2NVW HIS B -12 UNP Q06433 EXPRESSION TAG SEQADV 2NVW SER B -11 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW SER B -10 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW GLU B -9 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW ASN B -8 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW LEU B -7 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW TYR B -6 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW PHE B -5 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW GLN B -4 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW GLY B -3 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW HIS B -2 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW MET B -1 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW LEU B 0 UNP Q06433 CLONING ARTIFACT SEQADV 2NVW ALA B 1 UNP Q06433 CLONING ARTIFACT SEQRES 1 A 479 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLU SEQRES 2 A 479 ASN LEU TYR PHE GLN GLY HIS MET LEU ALA ASN ASN ASN SEQRES 3 A 479 LYS ARG SER LYS LEU SER THR VAL PRO SER SER ARG PRO SEQRES 4 A 479 ILE ARG VAL GLY PHE VAL GLY LEU THR SER GLY LYS SER SEQRES 5 A 479 TRP VAL ALA LYS THR HIS PHE LEU ALA ILE GLN GLN LEU SEQRES 6 A 479 SER SER GLN PHE GLN ILE VAL ALA LEU TYR ASN PRO THR SEQRES 7 A 479 LEU LYS SER SER LEU GLN THR ILE GLU GLN LEU GLN LEU SEQRES 8 A 479 LYS HIS ALA THR GLY PHE ASP SER LEU GLU SER PHE ALA SEQRES 9 A 479 GLN TYR LYS ASP ILE ASP MET ILE VAL VAL SER VAL LYS SEQRES 10 A 479 VAL PRO GLU HIS TYR GLU VAL VAL LYS ASN ILE LEU GLU SEQRES 11 A 479 HIS SER SER GLN ASN LEU ASN LEU ARG TYR LEU TYR VAL SEQRES 12 A 479 GLU TRP ALA LEU ALA ALA SER VAL GLN GLN ALA GLU GLU SEQRES 13 A 479 LEU TYR SER ILE SER GLN GLN ARG ALA ASN LEU GLN THR SEQRES 14 A 479 ILE ILE CYS LEU GLN GLY ARG LYS SER PRO TYR ILE VAL SEQRES 15 A 479 ARG ALA LYS GLU LEU ILE SER GLU GLY CYS ILE GLY ASP SEQRES 16 A 479 ILE ASN SER ILE GLU ILE SER GLY ASN GLY GLY TRP TYR SEQRES 17 A 479 GLY TYR GLU ARG PRO MET ARG SER PRO GLU TYR LEU TYR SEQRES 18 A 479 ASP ILE GLU SER GLY VAL ASN LEU ILE SER ASN SER PHE SEQRES 19 A 479 GLY HIS THR ILE ASP VAL LEU GLN TYR ILE THR GLY SER SEQRES 20 A 479 TYR PHE GLN LYS ILE ASN ALA MET ILE SER ASN ASN ILE SEQRES 21 A 479 PRO THR GLN PHE LEU LEU ASP GLU ASN GLY LYS ARG THR SEQRES 22 A 479 LYS GLU THR ILE SER LYS THR CYS PRO ASP HIS LEU LEU SEQRES 23 A 479 PHE GLN GLY ILE LEU GLU ASN GLY LYS VAL PRO VAL SER SEQRES 24 A 479 CYS SER PHE LYS GLY GLY THR PRO VAL LYS LYS LEU THR SEQRES 25 A 479 LYS ASN LEU VAL ILE ASP ILE HIS GLY THR LYS GLY ASP SEQRES 26 A 479 LEU LYS ILE GLU GLY ASP ALA GLY PHE VAL GLU ILE SER SEQRES 27 A 479 ASN LEU VAL LEU TYR PHE TYR GLY ILE LYS ASN GLY ASN SEQRES 28 A 479 GLY SER SER ASN GLY THR ASP ASN ASN GLY ALA ALA ALA SEQRES 29 A 479 ILE LYS ASP LYS GLU LYS VAL THR LYS SER PRO SER PRO SEQRES 30 A 479 SER THR GLY THR SER GLU GLU GLU GLN THR MET GLU VAL SEQRES 31 A 479 PHE HIS LEU ARG ASN TYR ASN SER VAL VAL GLY ASN ILE SEQRES 32 A 479 LEU ARG ILE TYR GLU SER ILE ALA ASP TYR HIS PHE LEU SEQRES 33 A 479 GLY LYS PRO GLU SER LYS SER SER ARG GLY PRO ASP ASP SEQRES 34 A 479 LEU PHE ALA SER THR LYS PHE ASP LYS GLN GLY PHE ARG SEQRES 35 A 479 PHE GLU GLY PHE PRO THR PHE LYS ASP ALA ILE ILE LEU SEQRES 36 A 479 HIS ARG LEU ILE ASP ALA VAL PHE ARG SER ASP LYS GLU SEQRES 37 A 479 GLU LYS THR LEU ASP VAL SER LYS ILE MET ILE SEQRES 1 B 479 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLU SEQRES 2 B 479 ASN LEU TYR PHE GLN GLY HIS MET LEU ALA ASN ASN ASN SEQRES 3 B 479 LYS ARG SER LYS LEU SER THR VAL PRO SER SER ARG PRO SEQRES 4 B 479 ILE ARG VAL GLY PHE VAL GLY LEU THR SER GLY LYS SER SEQRES 5 B 479 TRP VAL ALA LYS THR HIS PHE LEU ALA ILE GLN GLN LEU SEQRES 6 B 479 SER SER GLN PHE GLN ILE VAL ALA LEU TYR ASN PRO THR SEQRES 7 B 479 LEU LYS SER SER LEU GLN THR ILE GLU GLN LEU GLN LEU SEQRES 8 B 479 LYS HIS ALA THR GLY PHE ASP SER LEU GLU SER PHE ALA SEQRES 9 B 479 GLN TYR LYS ASP ILE ASP MET ILE VAL VAL SER VAL LYS SEQRES 10 B 479 VAL PRO GLU HIS TYR GLU VAL VAL LYS ASN ILE LEU GLU SEQRES 11 B 479 HIS SER SER GLN ASN LEU ASN LEU ARG TYR LEU TYR VAL SEQRES 12 B 479 GLU TRP ALA LEU ALA ALA SER VAL GLN GLN ALA GLU GLU SEQRES 13 B 479 LEU TYR SER ILE SER GLN GLN ARG ALA ASN LEU GLN THR SEQRES 14 B 479 ILE ILE CYS LEU GLN GLY ARG LYS SER PRO TYR ILE VAL SEQRES 15 B 479 ARG ALA LYS GLU LEU ILE SER GLU GLY CYS ILE GLY ASP SEQRES 16 B 479 ILE ASN SER ILE GLU ILE SER GLY ASN GLY GLY TRP TYR SEQRES 17 B 479 GLY TYR GLU ARG PRO MET ARG SER PRO GLU TYR LEU TYR SEQRES 18 B 479 ASP ILE GLU SER GLY VAL ASN LEU ILE SER ASN SER PHE SEQRES 19 B 479 GLY HIS THR ILE ASP VAL LEU GLN TYR ILE THR GLY SER SEQRES 20 B 479 TYR PHE GLN LYS ILE ASN ALA MET ILE SER ASN ASN ILE SEQRES 21 B 479 PRO THR GLN PHE LEU LEU ASP GLU ASN GLY LYS ARG THR SEQRES 22 B 479 LYS GLU THR ILE SER LYS THR CYS PRO ASP HIS LEU LEU SEQRES 23 B 479 PHE GLN GLY ILE LEU GLU ASN GLY LYS VAL PRO VAL SER SEQRES 24 B 479 CYS SER PHE LYS GLY GLY THR PRO VAL LYS LYS LEU THR SEQRES 25 B 479 LYS ASN LEU VAL ILE ASP ILE HIS GLY THR LYS GLY ASP SEQRES 26 B 479 LEU LYS ILE GLU GLY ASP ALA GLY PHE VAL GLU ILE SER SEQRES 27 B 479 ASN LEU VAL LEU TYR PHE TYR GLY ILE LYS ASN GLY ASN SEQRES 28 B 479 GLY SER SER ASN GLY THR ASP ASN ASN GLY ALA ALA ALA SEQRES 29 B 479 ILE LYS ASP LYS GLU LYS VAL THR LYS SER PRO SER PRO SEQRES 30 B 479 SER THR GLY THR SER GLU GLU GLU GLN THR MET GLU VAL SEQRES 31 B 479 PHE HIS LEU ARG ASN TYR ASN SER VAL VAL GLY ASN ILE SEQRES 32 B 479 LEU ARG ILE TYR GLU SER ILE ALA ASP TYR HIS PHE LEU SEQRES 33 B 479 GLY LYS PRO GLU SER LYS SER SER ARG GLY PRO ASP ASP SEQRES 34 B 479 LEU PHE ALA SER THR LYS PHE ASP LYS GLN GLY PHE ARG SEQRES 35 B 479 PHE GLU GLY PHE PRO THR PHE LYS ASP ALA ILE ILE LEU SEQRES 36 B 479 HIS ARG LEU ILE ASP ALA VAL PHE ARG SER ASP LYS GLU SEQRES 37 B 479 GLU LYS THR LEU ASP VAL SER LYS ILE MET ILE FORMUL 3 HOH *347(H2 O) HELIX 1 1 SER A -11 GLY A -3 5 9 HELIX 2 2 SER A 7 THR A 11 5 5 HELIX 3 3 VAL A 12 ARG A 16 5 5 HELIX 4 4 SER A 30 THR A 35 1 6 HELIX 5 5 THR A 35 LEU A 43 1 9 HELIX 6 6 THR A 56 LEU A 67 1 12 HELIX 7 7 SER A 77 TYR A 84 1 8 HELIX 8 8 LYS A 95 SER A 110 1 16 HELIX 9 9 SER A 128 GLN A 141 1 14 HELIX 10 10 LEU A 151 LYS A 155 5 5 HELIX 11 11 SER A 156 GLU A 168 1 13 HELIX 12 12 PRO A 195 GLY A 204 5 10 HELIX 13 13 ASN A 210 GLY A 224 1 15 HELIX 14 14 ASN A 271 LYS A 273 5 3 HELIX 15 15 ASN A 375 LEU A 394 1 20 HELIX 16 16 THR A 426 GLU A 447 1 22 HELIX 17 17 SER B -11 LEU B -7 5 5 HELIX 18 18 SER B 30 THR B 35 1 6 HELIX 19 19 THR B 35 LEU B 43 1 9 HELIX 20 20 THR B 56 LEU B 67 1 12 HELIX 21 21 SER B 77 TYR B 84 1 8 HELIX 22 22 LYS B 95 HIS B 109 1 15 HELIX 23 23 SER B 128 GLN B 141 1 14 HELIX 24 24 LEU B 151 LYS B 155 5 5 HELIX 25 25 SER B 156 GLU B 168 1 13 HELIX 26 26 PRO B 195 ASP B 200 1 6 HELIX 27 27 ILE B 201 GLY B 204 5 4 HELIX 28 28 ASN B 210 GLY B 224 1 15 HELIX 29 29 ASN B 375 LEU B 394 1 20 HELIX 30 30 THR B 426 GLU B 447 1 22 SHEET 1 A 6 THR A 73 PHE A 75 0 SHEET 2 A 6 PHE A 47 TYR A 53 1 N VAL A 50 O THR A 73 SHEET 3 A 6 ILE A 18 VAL A 23 1 N VAL A 20 O GLN A 48 SHEET 4 A 6 MET A 89 VAL A 92 1 O VAL A 91 N GLY A 21 SHEET 5 A 6 TYR A 118 GLU A 122 1 O TYR A 120 N VAL A 92 SHEET 6 A 6 GLN A 146 CYS A 150 1 O ILE A 148 N LEU A 119 SHEET 1 B 9 GLN A 364 PHE A 369 0 SHEET 2 B 9 LEU A 318 ILE A 325 -1 N GLY A 324 O THR A 365 SHEET 3 B 9 ASP A 303 GLY A 308 -1 N LYS A 305 O TYR A 321 SHEET 4 B 9 LEU A 293 GLY A 299 -1 N ILE A 297 O LEU A 304 SHEET 5 B 9 ILE A 174 ASN A 182 -1 N ASN A 175 O HIS A 298 SHEET 6 B 9 PRO A 275 LYS A 281 1 O PRO A 275 N ILE A 177 SHEET 7 B 9 HIS A 262 LEU A 269 -1 N LEU A 263 O PHE A 280 SHEET 8 B 9 PHE A 227 SER A 235 -1 N GLN A 228 O ILE A 268 SHEET 9 B 9 LEU A 450 ASP A 451 -1 O LEU A 450 N ILE A 230 SHEET 1 C 3 GLU A 189 PRO A 191 0 SHEET 2 C 3 THR A 240 LEU A 244 1 O PHE A 242 N ARG A 190 SHEET 3 C 3 THR A 254 SER A 256 -1 O ILE A 255 N GLN A 241 SHEET 1 D 6 THR B 73 PHE B 75 0 SHEET 2 D 6 PHE B 47 TYR B 53 1 N LEU B 52 O PHE B 75 SHEET 3 D 6 ILE B 18 VAL B 23 1 N VAL B 20 O GLN B 48 SHEET 4 D 6 MET B 89 VAL B 92 1 O VAL B 91 N VAL B 23 SHEET 5 D 6 TYR B 118 GLU B 122 1 O TYR B 120 N ILE B 90 SHEET 6 D 6 GLN B 146 CYS B 150 1 O ILE B 148 N LEU B 119 SHEET 1 E 9 THR B 365 PHE B 369 0 SHEET 2 E 9 VAL B 319 GLY B 324 -1 N PHE B 322 O GLU B 367 SHEET 3 E 9 ASP B 303 GLY B 308 -1 N LYS B 305 O TYR B 321 SHEET 4 E 9 LEU B 293 GLY B 299 -1 N ILE B 297 O LEU B 304 SHEET 5 E 9 ILE B 174 ASN B 182 -1 N ASN B 175 O HIS B 298 SHEET 6 E 9 VAL B 274 LYS B 281 1 O SER B 277 N ILE B 179 SHEET 7 E 9 HIS B 262 LEU B 269 -1 N LEU B 269 O VAL B 274 SHEET 8 E 9 PHE B 227 SER B 235 -1 N MET B 233 O LEU B 264 SHEET 9 E 9 LEU B 450 ASP B 451 -1 O LEU B 450 N ILE B 230 SHEET 1 F 3 GLU B 189 ARG B 190 0 SHEET 2 F 3 THR B 240 LEU B 243 1 O PHE B 242 N ARG B 190 SHEET 3 F 3 THR B 254 SER B 256 -1 O ILE B 255 N GLN B 241 CISPEP 1 TRP A 123 ALA A 124 0 1.52 CISPEP 2 THR A 284 PRO A 285 0 -0.22 CISPEP 3 TRP B 123 ALA B 124 0 -1.02 CISPEP 4 THR B 284 PRO B 285 0 -0.62 CRYST1 112.200 137.100 72.900 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008913 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013717 0.00000