data_2NWG # _entry.id 2NWG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2NWG pdb_00002nwg 10.2210/pdb2nwg/pdb RCSB RCSB040386 ? ? WWPDB D_1000040386 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-13 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 2 0 2020-07-29 6 'Structure model' 2 1 2023-12-27 7 'Structure model' 2 2 2024-10-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Atomic model' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Non-polymer description' 9 5 'Structure model' 'Structure summary' 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Database references' 12 6 'Structure model' 'Structure summary' 13 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' atom_site 3 5 'Structure model' chem_comp 4 5 'Structure model' entity 5 5 'Structure model' entity_name_com 6 5 'Structure model' pdbx_branch_scheme 7 5 'Structure model' pdbx_chem_comp_identifier 8 5 'Structure model' pdbx_entity_branch 9 5 'Structure model' pdbx_entity_branch_descriptor 10 5 'Structure model' pdbx_entity_branch_link 11 5 'Structure model' pdbx_entity_branch_list 12 5 'Structure model' pdbx_entity_nonpoly 13 5 'Structure model' pdbx_molecule_features 14 5 'Structure model' pdbx_nonpoly_scheme 15 5 'Structure model' struct_conn 16 5 'Structure model' struct_conn_type 17 5 'Structure model' struct_ref_seq_dif 18 5 'Structure model' struct_site 19 5 'Structure model' struct_site_gen 20 6 'Structure model' chem_comp 21 6 'Structure model' chem_comp_atom 22 6 'Structure model' chem_comp_bond 23 6 'Structure model' database_2 24 7 'Structure model' pdbx_entry_details 25 7 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.B_iso_or_equiv' 2 5 'Structure model' '_atom_site.Cartn_x' 3 5 'Structure model' '_atom_site.Cartn_y' 4 5 'Structure model' '_atom_site.Cartn_z' 5 5 'Structure model' '_atom_site.auth_asym_id' 6 5 'Structure model' '_atom_site.auth_atom_id' 7 5 'Structure model' '_atom_site.auth_comp_id' 8 5 'Structure model' '_atom_site.auth_seq_id' 9 5 'Structure model' '_atom_site.label_atom_id' 10 5 'Structure model' '_atom_site.label_comp_id' 11 5 'Structure model' '_atom_site.type_symbol' 12 5 'Structure model' '_chem_comp.formula' 13 5 'Structure model' '_chem_comp.formula_weight' 14 5 'Structure model' '_chem_comp.id' 15 5 'Structure model' '_chem_comp.mon_nstd_flag' 16 5 'Structure model' '_chem_comp.name' 17 5 'Structure model' '_chem_comp.type' 18 5 'Structure model' '_entity.formula_weight' 19 5 'Structure model' '_entity.pdbx_description' 20 5 'Structure model' '_entity.src_method' 21 5 'Structure model' '_entity.type' 22 5 'Structure model' '_struct_ref_seq_dif.details' 23 6 'Structure model' '_chem_comp.pdbx_synonyms' 24 6 'Structure model' '_database_2.pdbx_DOI' 25 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 2NWG _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-11-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Murphy, J.W.' 1 'Cho, Y.' 2 'Lolis, E.' 3 # _citation.id primary _citation.title 'Structural and Functional Basis of CXCL12 (Stromal Cell-derived Factor-1{alpha}) Binding to Heparin' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 282 _citation.page_first 10018 _citation.page_last 10027 _citation.year 2007 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17264079 _citation.pdbx_database_id_DOI 10.1074/jbc.M608796200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Murphy, J.W.' 1 ? primary 'Cho, Y.' 2 ? primary 'Sachpatzidis, A.' 3 ? primary 'Fan, C.' 4 ? primary 'Hodsdon, M.E.' 5 ? primary 'Lolis, E.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Stromal cell-derived factor 1' 7994.504 2 ? ? 'residues 22-88' ? 2 branched man '4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose' 577.470 2 ? ? ? ? 3 water nat water 18.015 50 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'CXCL12; SDF-1; Pre-B cell growth-stimulating factor; PBSF; hIRH' 2 'HEPARIN DISACCHARIDE I-S,' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MKPVSLSYRCPCRFFESHIARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALN _entity_poly.pdbx_seq_one_letter_code_can MKPVSLSYRCPCRFFESHIARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALN _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 PRO n 1 4 VAL n 1 5 SER n 1 6 LEU n 1 7 SER n 1 8 TYR n 1 9 ARG n 1 10 CYS n 1 11 PRO n 1 12 CYS n 1 13 ARG n 1 14 PHE n 1 15 PHE n 1 16 GLU n 1 17 SER n 1 18 HIS n 1 19 ILE n 1 20 ALA n 1 21 ARG n 1 22 ALA n 1 23 ASN n 1 24 VAL n 1 25 LYS n 1 26 HIS n 1 27 LEU n 1 28 LYS n 1 29 ILE n 1 30 LEU n 1 31 ASN n 1 32 THR n 1 33 PRO n 1 34 ASN n 1 35 CYS n 1 36 ALA n 1 37 LEU n 1 38 GLN n 1 39 ILE n 1 40 VAL n 1 41 ALA n 1 42 ARG n 1 43 LEU n 1 44 LYS n 1 45 ASN n 1 46 ASN n 1 47 ASN n 1 48 ARG n 1 49 GLN n 1 50 VAL n 1 51 CYS n 1 52 ILE n 1 53 ASP n 1 54 PRO n 1 55 LYS n 1 56 LEU n 1 57 LYS n 1 58 TRP n 1 59 ILE n 1 60 GLN n 1 61 GLU n 1 62 TYR n 1 63 LEU n 1 64 GLU n 1 65 LYS n 1 66 ALA n 1 67 LEU n 1 68 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'CXCL12, SDF1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/2,2,1/[a2122h-1a_1-5_2*NSO/3=O/3=O_6*OSO/3=O/3=O][a21eEA-1a_1-5_2*OSO/3=O/3=O]/1-2/a4-b1' WURCS PDB2Glycan 1.1.0 2 2 '[][a-D-GlcpNSO36SO3]{[(4+1)][b-D-4-deoxy-GlcpA2SO3]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 UAP _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 SGN _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SGN 'D-saccharide, alpha linking' n '2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose' ;N,O6-DISULFO-GLUCOSAMINE; 6-O-sulfo-N-sulfo-alpha-D-glucosamine; 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucose; 2-deoxy-6-O-sulfo-2-(sulfoamino)-D-glucose; 2-deoxy-6-O-sulfo-2-(sulfoamino)-glucose ; 'C6 H13 N O11 S2' 339.298 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UAP 'L-saccharide, alpha linking' . '4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid' ;4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enuronic acid; 4-deoxy-2-O-sulfo-L-threo-hex-4-enuronic acid; 4-deoxy-2-O-sulfo-threo-hex-4-enuronic acid ; 'C6 H8 O9 S' 256.187 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SGN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGlcpNS[6S]a' SGN 'COMMON NAME' GMML 1.0 N-sulfo-6-sulfo-a-D-glucopyranose SGN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GlcpNSO36SO3 UAP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-4-deoxy-GlcpA2SO3 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET MET A . n A 1 2 LYS 2 1 1 LYS LYS A . n A 1 3 PRO 3 2 2 PRO PRO A . n A 1 4 VAL 4 3 3 VAL VAL A . n A 1 5 SER 5 4 4 SER SER A . n A 1 6 LEU 6 5 5 LEU LEU A . n A 1 7 SER 7 6 6 SER SER A . n A 1 8 TYR 8 7 7 TYR TYR A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 CYS 10 9 9 CYS CYS A . n A 1 11 PRO 11 10 10 PRO PRO A . n A 1 12 CYS 12 11 11 CYS CYS A . n A 1 13 ARG 13 12 12 ARG ARG A . n A 1 14 PHE 14 13 13 PHE PHE A . n A 1 15 PHE 15 14 14 PHE PHE A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 SER 17 16 16 SER SER A . n A 1 18 HIS 18 17 17 HIS HIS A . n A 1 19 ILE 19 18 18 ILE ILE A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 ARG 21 20 20 ARG ARG A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 ASN 23 22 22 ASN ASN A . n A 1 24 VAL 24 23 23 VAL VAL A . n A 1 25 LYS 25 24 24 LYS LYS A . n A 1 26 HIS 26 25 25 HIS HIS A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 ILE 29 28 28 ILE ILE A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 ASN 31 30 30 ASN ASN A . n A 1 32 THR 32 31 31 THR THR A . n A 1 33 PRO 33 32 32 PRO PRO A . n A 1 34 ASN 34 33 33 ASN ASN A . n A 1 35 CYS 35 34 34 CYS CYS A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 LEU 37 36 36 LEU LEU A . n A 1 38 GLN 38 37 37 GLN GLN A . n A 1 39 ILE 39 38 38 ILE ILE A . n A 1 40 VAL 40 39 39 VAL VAL A . n A 1 41 ALA 41 40 40 ALA ALA A . n A 1 42 ARG 42 41 41 ARG ARG A . n A 1 43 LEU 43 42 42 LEU LEU A . n A 1 44 LYS 44 43 43 LYS LYS A . n A 1 45 ASN 45 44 44 ASN ASN A . n A 1 46 ASN 46 45 45 ASN ASN A . n A 1 47 ASN 47 46 46 ASN ASN A . n A 1 48 ARG 48 47 47 ARG ARG A . n A 1 49 GLN 49 48 48 GLN GLN A . n A 1 50 VAL 50 49 49 VAL VAL A . n A 1 51 CYS 51 50 50 CYS CYS A . n A 1 52 ILE 52 51 51 ILE ILE A . n A 1 53 ASP 53 52 52 ASP ASP A . n A 1 54 PRO 54 53 53 PRO PRO A . n A 1 55 LYS 55 54 54 LYS LYS A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 LYS 57 56 56 LYS LYS A . n A 1 58 TRP 58 57 57 TRP TRP A . n A 1 59 ILE 59 58 58 ILE ILE A . n A 1 60 GLN 60 59 59 GLN GLN A . n A 1 61 GLU 61 60 60 GLU GLU A . n A 1 62 TYR 62 61 61 TYR TYR A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 GLU 64 63 63 GLU GLU A . n A 1 65 LYS 65 64 64 LYS LYS A . n A 1 66 ALA 66 65 65 ALA ALA A . n A 1 67 LEU 67 66 66 LEU LEU A . n A 1 68 ASN 68 67 67 ASN ASN A . n B 1 1 MET 1 0 ? ? ? B . n B 1 2 LYS 2 1 ? ? ? B . n B 1 3 PRO 3 2 ? ? ? B . n B 1 4 VAL 4 3 ? ? ? B . n B 1 5 SER 5 4 4 SER SER B . n B 1 6 LEU 6 5 5 LEU LEU B . n B 1 7 SER 7 6 6 SER SER B . n B 1 8 TYR 8 7 7 TYR TYR B . n B 1 9 ARG 9 8 8 ARG ARG B . n B 1 10 CYS 10 9 9 CYS CYS B . n B 1 11 PRO 11 10 10 PRO PRO B . n B 1 12 CYS 12 11 11 CYS CYS B . n B 1 13 ARG 13 12 12 ARG ARG B . n B 1 14 PHE 14 13 13 PHE PHE B . n B 1 15 PHE 15 14 14 PHE PHE B . n B 1 16 GLU 16 15 15 GLU GLU B . n B 1 17 SER 17 16 16 SER SER B . n B 1 18 HIS 18 17 17 HIS HIS B . n B 1 19 ILE 19 18 18 ILE ILE B . n B 1 20 ALA 20 19 19 ALA ALA B . n B 1 21 ARG 21 20 20 ARG ARG B . n B 1 22 ALA 22 21 21 ALA ALA B . n B 1 23 ASN 23 22 22 ASN ASN B . n B 1 24 VAL 24 23 23 VAL VAL B . n B 1 25 LYS 25 24 24 LYS LYS B . n B 1 26 HIS 26 25 25 HIS HIS B . n B 1 27 LEU 27 26 26 LEU LEU B . n B 1 28 LYS 28 27 27 LYS LYS B . n B 1 29 ILE 29 28 28 ILE ILE B . n B 1 30 LEU 30 29 29 LEU LEU B . n B 1 31 ASN 31 30 30 ASN ASN B . n B 1 32 THR 32 31 31 THR THR B . n B 1 33 PRO 33 32 32 PRO PRO B . n B 1 34 ASN 34 33 33 ASN ASN B . n B 1 35 CYS 35 34 34 CYS CYS B . n B 1 36 ALA 36 35 35 ALA ALA B . n B 1 37 LEU 37 36 36 LEU LEU B . n B 1 38 GLN 38 37 37 GLN GLN B . n B 1 39 ILE 39 38 38 ILE ILE B . n B 1 40 VAL 40 39 39 VAL VAL B . n B 1 41 ALA 41 40 40 ALA ALA B . n B 1 42 ARG 42 41 41 ARG ARG B . n B 1 43 LEU 43 42 42 LEU LEU B . n B 1 44 LYS 44 43 43 LYS LYS B . n B 1 45 ASN 45 44 44 ASN ASN B . n B 1 46 ASN 46 45 45 ASN ASN B . n B 1 47 ASN 47 46 46 ASN ASN B . n B 1 48 ARG 48 47 47 ARG ARG B . n B 1 49 GLN 49 48 48 GLN GLN B . n B 1 50 VAL 50 49 49 VAL VAL B . n B 1 51 CYS 51 50 50 CYS CYS B . n B 1 52 ILE 52 51 51 ILE ILE B . n B 1 53 ASP 53 52 52 ASP ASP B . n B 1 54 PRO 54 53 53 PRO PRO B . n B 1 55 LYS 55 54 54 LYS LYS B . n B 1 56 LEU 56 55 55 LEU LEU B . n B 1 57 LYS 57 56 56 LYS LYS B . n B 1 58 TRP 58 57 57 TRP TRP B . n B 1 59 ILE 59 58 58 ILE ILE B . n B 1 60 GLN 60 59 59 GLN GLN B . n B 1 61 GLU 61 60 60 GLU GLU B . n B 1 62 TYR 62 61 61 TYR TYR B . n B 1 63 LEU 63 62 62 LEU LEU B . n B 1 64 GLU 64 63 63 GLU GLU B . n B 1 65 LYS 65 64 64 LYS LYS B . n B 1 66 ALA 66 65 65 ALA ALA B . n B 1 67 LEU 67 66 66 LEU LEU B . n B 1 68 ASN 68 67 67 ASN ASN B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 SGN 1 C SGN 1 C H1S 1 n C 2 UAP 2 C UAP 2 C H1S 1 n D 2 SGN 1 D SGN 1 C H1S 2 n D 2 UAP 2 D UAP 2 C H1S 2 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 70 2 HOH HOH A . E 3 HOH 2 71 3 HOH HOH A . E 3 HOH 3 72 4 HOH HOH A . E 3 HOH 4 73 6 HOH HOH A . E 3 HOH 5 74 7 HOH HOH A . E 3 HOH 6 75 9 HOH HOH A . E 3 HOH 7 76 10 HOH HOH A . E 3 HOH 8 77 11 HOH HOH A . E 3 HOH 9 78 12 HOH HOH A . E 3 HOH 10 79 17 HOH HOH A . E 3 HOH 11 80 18 HOH HOH A . E 3 HOH 12 81 19 HOH HOH A . E 3 HOH 13 82 21 HOH HOH A . E 3 HOH 14 83 22 HOH HOH A . E 3 HOH 15 84 24 HOH HOH A . E 3 HOH 16 85 25 HOH HOH A . E 3 HOH 17 86 27 HOH HOH A . E 3 HOH 18 87 28 HOH HOH A . E 3 HOH 19 88 30 HOH HOH A . E 3 HOH 20 89 31 HOH HOH A . E 3 HOH 21 90 35 HOH HOH A . E 3 HOH 22 91 36 HOH HOH A . E 3 HOH 23 92 38 HOH HOH A . E 3 HOH 24 93 39 HOH HOH A . E 3 HOH 25 94 40 HOH HOH A . E 3 HOH 26 95 41 HOH HOH A . E 3 HOH 27 96 42 HOH HOH A . E 3 HOH 28 97 43 HOH HOH A . E 3 HOH 29 98 44 HOH HOH A . E 3 HOH 30 99 45 HOH HOH A . E 3 HOH 31 100 46 HOH HOH A . E 3 HOH 32 101 47 HOH HOH A . E 3 HOH 33 102 48 HOH HOH A . E 3 HOH 34 103 50 HOH HOH A . F 3 HOH 1 68 1 HOH HOH B . F 3 HOH 2 69 5 HOH HOH B . F 3 HOH 3 70 8 HOH HOH B . F 3 HOH 4 71 13 HOH HOH B . F 3 HOH 5 72 14 HOH HOH B . F 3 HOH 6 73 15 HOH HOH B . F 3 HOH 7 74 16 HOH HOH B . F 3 HOH 8 75 20 HOH HOH B . F 3 HOH 9 76 23 HOH HOH B . F 3 HOH 10 77 26 HOH HOH B . F 3 HOH 11 78 29 HOH HOH B . F 3 HOH 12 79 32 HOH HOH B . F 3 HOH 13 80 33 HOH HOH B . F 3 HOH 14 81 34 HOH HOH B . F 3 HOH 15 82 37 HOH HOH B . F 3 HOH 16 83 49 HOH HOH B . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 CrystalClear '(MSC/RIGAKU)' ? ? ? ? 'data collection' ? ? ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 8 # _cell.length_a 36.492 _cell.length_b 56.965 _cell.length_c 71.747 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 2NWG _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 2NWG _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 2NWG _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_percent_sol 47.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method Soaking _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;Grown in 2M Ammonium Sulfate, 0.1M TrisHCl pH 8.50. Soaked in 20 mM PEG-8000, 1M TrisHCl pH 8.5, 16 mM disaccharide. , Soaking, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2NWG _reflns.d_resolution_high 2.070 _reflns.d_resolution_low 25.582 _reflns.number_obs 9627 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_netI_over_sigmaI 31.900 _reflns.pdbx_chi_squared 1.272 _reflns.pdbx_redundancy 6.300 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value 0.057 _reflns.observed_criterion_sigma_F ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.07 2.18 ? 9045 ? 0.367 2.0 0.367 ? 6.50 ? 1385 100.00 ? 1 2.18 2.31 ? 8484 ? 0.259 2.8 0.259 ? 6.60 ? 1287 100.00 ? 2 2.31 2.47 ? 8083 ? 0.173 3.9 0.173 ? 6.60 ? 1229 100.00 ? 3 2.47 2.67 ? 7554 ? 0.121 5.8 0.121 ? 6.60 ? 1140 100.00 ? 4 2.67 2.93 ? 7074 ? 0.086 7.9 0.086 ? 6.60 ? 1066 100.00 ? 5 2.93 3.27 ? 6429 ? 0.065 9.3 0.065 ? 6.60 ? 971 100.00 ? 6 3.27 3.78 ? 5744 ? 0.055 10.7 0.055 ? 6.60 ? 870 100.00 ? 7 3.78 4.63 ? 4818 ? 0.048 12.1 0.048 ? 6.60 ? 735 100.00 ? 8 4.63 6.55 ? 3751 ? 0.042 13.1 0.042 ? 6.30 ? 591 100.00 ? 9 6.55 26.47 ? 2035 ? 0.034 15.6 0.034 ? 5.80 ? 353 98.30 ? 10 # _refine.entry_id 2NWG _refine.ls_d_res_high 2.070 _refine.ls_d_res_low 23.340 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 100.000 _refine.ls_number_reflns_obs 9589 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.241 _refine.ls_R_factor_R_work 0.24 _refine.ls_R_factor_R_free 0.265 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 459 _refine.B_iso_mean 42.461 _refine.aniso_B[1][1] 0.090 _refine.aniso_B[2][2] -0.020 _refine.aniso_B[3][3] -0.070 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.pdbx_overall_ESU_R 0.268 _refine.pdbx_overall_ESU_R_Free 0.203 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1087 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 70 _refine_hist.number_atoms_solvent 50 _refine_hist.number_atoms_total 1207 _refine_hist.d_res_high 2.070 _refine_hist.d_res_low 23.340 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1184 0.025 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1615 2.519 2.050 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 130 8.317 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 52 35.449 23.462 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 214 20.706 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 21.320 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 189 0.211 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 836 0.009 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 475 0.257 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 775 0.318 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 55 0.222 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 73 0.261 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 9 0.251 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 667 1.370 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1084 2.255 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 517 1.654 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 531 2.373 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.070 _refine_ls_shell.d_res_low 2.123 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 668 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.292 _refine_ls_shell.R_factor_R_free 0.363 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 33 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 701 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2NWG _struct.title 'Structure of CXCL12:heparin disaccharide complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NWG _struct_keywords.pdbx_keywords 'CYTOKINE,SIGNALING PROTEIN' _struct_keywords.text 'protein-glycosaminoglycan complex, CYTOKINE, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code SDF1_HUMAN _struct_ref.pdbx_db_accession P48061 _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_seq_one_letter_code KPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALN _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2NWG A 2 ? 68 ? P48061 22 ? 88 ? 1 67 2 1 2NWG B 2 ? 68 ? P48061 22 ? 88 ? 1 67 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2NWG MET A 1 ? UNP P48061 ? ? 'initiating methionine' 0 1 1 2NWG ILE A 19 ? UNP P48061 VAL 39 conflict 18 2 2 2NWG MET B 1 ? UNP P48061 ? ? 'initiating methionine' 0 3 2 2NWG ILE B 19 ? UNP P48061 VAL 39 conflict 18 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3110 ? 1 MORE -28 ? 1 'SSA (A^2)' 8890 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'asymmetric consists of a biological dimer' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 20 ? ALA A 22 ? ALA A 19 ALA A 21 5 ? 3 HELX_P HELX_P2 2 TRP A 58 ? ASN A 68 ? TRP A 57 ASN A 67 1 ? 11 HELX_P HELX_P3 3 ALA B 20 ? ALA B 22 ? ALA B 19 ALA B 21 5 ? 3 HELX_P HELX_P4 4 LEU B 56 ? ASN B 68 ? LEU B 55 ASN B 67 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 35 SG ? ? A CYS 9 A CYS 34 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf2 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 51 SG ? ? A CYS 11 A CYS 50 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf3 disulf ? ? B CYS 10 SG ? ? ? 1_555 B CYS 35 SG ? ? B CYS 9 B CYS 34 1_555 ? ? ? ? ? ? ? 2.049 ? ? disulf4 disulf ? ? B CYS 12 SG ? ? ? 1_555 B CYS 51 SG ? ? B CYS 11 B CYS 50 1_555 ? ? ? ? ? ? ? 2.040 ? ? covale1 covale both ? C SGN . O4 ? ? ? 1_555 C UAP . C1 ? ? C SGN 1 C UAP 2 1_555 ? ? ? ? ? ? ? 1.476 sing ? covale2 covale both ? D SGN . O4 ? ? ? 1_555 D UAP . C1 ? ? D SGN 1 D UAP 2 1_555 ? ? ? ? ? ? ? 1.453 sing ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 10 ? CYS A 35 ? CYS A 9 ? 1_555 CYS A 34 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 12 ? CYS A 51 ? CYS A 11 ? 1_555 CYS A 50 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS B 10 ? CYS B 35 ? CYS B 9 ? 1_555 CYS B 34 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS B 12 ? CYS B 51 ? CYS B 11 ? 1_555 CYS B 50 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 49 ? CYS A 51 ? GLN A 48 CYS A 50 A 2 ILE A 39 ? LEU A 43 ? ILE A 38 LEU A 42 A 3 VAL A 24 ? LEU A 30 ? VAL A 23 LEU A 29 A 4 VAL B 24 ? LEU B 30 ? VAL B 23 LEU B 29 A 5 ILE B 39 ? LEU B 43 ? ILE B 38 LEU B 42 A 6 GLN B 49 ? CYS B 51 ? GLN B 48 CYS B 50 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 50 ? O VAL A 49 N ALA A 41 ? N ALA A 40 A 2 3 O ARG A 42 ? O ARG A 41 N LYS A 25 ? N LYS A 24 A 3 4 N ILE A 29 ? N ILE A 28 O LEU B 27 ? O LEU B 26 A 4 5 N LYS B 28 ? N LYS B 27 O VAL B 40 ? O VAL B 39 A 5 6 N ALA B 41 ? N ALA B 40 O VAL B 50 ? O VAL B 49 # _pdbx_entry_details.entry_id 2NWG _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB B LEU 26 ? ? CG B LEU 26 ? ? CD2 B LEU 26 ? ? 121.93 111.00 10.93 1.70 N 2 1 CG1 B ILE 38 ? ? CB B ILE 38 ? ? CG2 B ILE 38 ? ? 98.07 111.40 -13.33 2.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR B 7 ? ? -57.76 109.58 2 1 ASN B 44 ? ? 104.34 -74.28 # _pdbx_molecule_features.prd_id PRD_900026 _pdbx_molecule_features.name 'HEPARIN DISACCHARIDE I-S,' _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class 'Substrate analog' _pdbx_molecule_features.details 'oligosaccharide with ring modification on monosaccharide components' # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_900026 C 2 PRD_900026 D # _pdbx_phasing_MR.entry_id 2NWG _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.000 _pdbx_phasing_MR.d_res_low_rotation 35.870 _pdbx_phasing_MR.d_res_high_translation 2.000 _pdbx_phasing_MR.d_res_low_translation 35.870 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET 0 ? B MET 1 2 1 Y 1 B LYS 1 ? B LYS 2 3 1 Y 1 B PRO 2 ? B PRO 3 4 1 Y 1 B VAL 3 ? B VAL 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 HIS N N N N 127 HIS CA C N S 128 HIS C C N N 129 HIS O O N N 130 HIS CB C N N 131 HIS CG C Y N 132 HIS ND1 N Y N 133 HIS CD2 C Y N 134 HIS CE1 C Y N 135 HIS NE2 N Y N 136 HIS OXT O N N 137 HIS H H N N 138 HIS H2 H N N 139 HIS HA H N N 140 HIS HB2 H N N 141 HIS HB3 H N N 142 HIS HD1 H N N 143 HIS HD2 H N N 144 HIS HE1 H N N 145 HIS HE2 H N N 146 HIS HXT H N N 147 HOH O O N N 148 HOH H1 H N N 149 HOH H2 H N N 150 ILE N N N N 151 ILE CA C N S 152 ILE C C N N 153 ILE O O N N 154 ILE CB C N S 155 ILE CG1 C N N 156 ILE CG2 C N N 157 ILE CD1 C N N 158 ILE OXT O N N 159 ILE H H N N 160 ILE H2 H N N 161 ILE HA H N N 162 ILE HB H N N 163 ILE HG12 H N N 164 ILE HG13 H N N 165 ILE HG21 H N N 166 ILE HG22 H N N 167 ILE HG23 H N N 168 ILE HD11 H N N 169 ILE HD12 H N N 170 ILE HD13 H N N 171 ILE HXT H N N 172 LEU N N N N 173 LEU CA C N S 174 LEU C C N N 175 LEU O O N N 176 LEU CB C N N 177 LEU CG C N N 178 LEU CD1 C N N 179 LEU CD2 C N N 180 LEU OXT O N N 181 LEU H H N N 182 LEU H2 H N N 183 LEU HA H N N 184 LEU HB2 H N N 185 LEU HB3 H N N 186 LEU HG H N N 187 LEU HD11 H N N 188 LEU HD12 H N N 189 LEU HD13 H N N 190 LEU HD21 H N N 191 LEU HD22 H N N 192 LEU HD23 H N N 193 LEU HXT H N N 194 LYS N N N N 195 LYS CA C N S 196 LYS C C N N 197 LYS O O N N 198 LYS CB C N N 199 LYS CG C N N 200 LYS CD C N N 201 LYS CE C N N 202 LYS NZ N N N 203 LYS OXT O N N 204 LYS H H N N 205 LYS H2 H N N 206 LYS HA H N N 207 LYS HB2 H N N 208 LYS HB3 H N N 209 LYS HG2 H N N 210 LYS HG3 H N N 211 LYS HD2 H N N 212 LYS HD3 H N N 213 LYS HE2 H N N 214 LYS HE3 H N N 215 LYS HZ1 H N N 216 LYS HZ2 H N N 217 LYS HZ3 H N N 218 LYS HXT H N N 219 MET N N N N 220 MET CA C N S 221 MET C C N N 222 MET O O N N 223 MET CB C N N 224 MET CG C N N 225 MET SD S N N 226 MET CE C N N 227 MET OXT O N N 228 MET H H N N 229 MET H2 H N N 230 MET HA H N N 231 MET HB2 H N N 232 MET HB3 H N N 233 MET HG2 H N N 234 MET HG3 H N N 235 MET HE1 H N N 236 MET HE2 H N N 237 MET HE3 H N N 238 MET HXT H N N 239 PHE N N N N 240 PHE CA C N S 241 PHE C C N N 242 PHE O O N N 243 PHE CB C N N 244 PHE CG C Y N 245 PHE CD1 C Y N 246 PHE CD2 C Y N 247 PHE CE1 C Y N 248 PHE CE2 C Y N 249 PHE CZ C Y N 250 PHE OXT O N N 251 PHE H H N N 252 PHE H2 H N N 253 PHE HA H N N 254 PHE HB2 H N N 255 PHE HB3 H N N 256 PHE HD1 H N N 257 PHE HD2 H N N 258 PHE HE1 H N N 259 PHE HE2 H N N 260 PHE HZ H N N 261 PHE HXT H N N 262 PRO N N N N 263 PRO CA C N S 264 PRO C C N N 265 PRO O O N N 266 PRO CB C N N 267 PRO CG C N N 268 PRO CD C N N 269 PRO OXT O N N 270 PRO H H N N 271 PRO HA H N N 272 PRO HB2 H N N 273 PRO HB3 H N N 274 PRO HG2 H N N 275 PRO HG3 H N N 276 PRO HD2 H N N 277 PRO HD3 H N N 278 PRO HXT H N N 279 SER N N N N 280 SER CA C N S 281 SER C C N N 282 SER O O N N 283 SER CB C N N 284 SER OG O N N 285 SER OXT O N N 286 SER H H N N 287 SER H2 H N N 288 SER HA H N N 289 SER HB2 H N N 290 SER HB3 H N N 291 SER HG H N N 292 SER HXT H N N 293 SGN C1 C N S 294 SGN C2 C N R 295 SGN C3 C N R 296 SGN C4 C N S 297 SGN C5 C N R 298 SGN C6 C N N 299 SGN N2 N N N 300 SGN O1 O N N 301 SGN O3 O N N 302 SGN O4 O N N 303 SGN O5 O N N 304 SGN O6 O N N 305 SGN S1 S N N 306 SGN O1S O N N 307 SGN O2S O N N 308 SGN O3S O N N 309 SGN S2 S N N 310 SGN O4S O N N 311 SGN O5S O N N 312 SGN O6S O N N 313 SGN H1 H N N 314 SGN H2 H N N 315 SGN H3 H N N 316 SGN H4 H N N 317 SGN H5 H N N 318 SGN H61 H N N 319 SGN H62 H N N 320 SGN HN21 H N N 321 SGN HO1 H N N 322 SGN HO3 H N N 323 SGN HO4 H N N 324 SGN HOS3 H N N 325 SGN HOS6 H N N 326 THR N N N N 327 THR CA C N S 328 THR C C N N 329 THR O O N N 330 THR CB C N R 331 THR OG1 O N N 332 THR CG2 C N N 333 THR OXT O N N 334 THR H H N N 335 THR H2 H N N 336 THR HA H N N 337 THR HB H N N 338 THR HG1 H N N 339 THR HG21 H N N 340 THR HG22 H N N 341 THR HG23 H N N 342 THR HXT H N N 343 TRP N N N N 344 TRP CA C N S 345 TRP C C N N 346 TRP O O N N 347 TRP CB C N N 348 TRP CG C Y N 349 TRP CD1 C Y N 350 TRP CD2 C Y N 351 TRP NE1 N Y N 352 TRP CE2 C Y N 353 TRP CE3 C Y N 354 TRP CZ2 C Y N 355 TRP CZ3 C Y N 356 TRP CH2 C Y N 357 TRP OXT O N N 358 TRP H H N N 359 TRP H2 H N N 360 TRP HA H N N 361 TRP HB2 H N N 362 TRP HB3 H N N 363 TRP HD1 H N N 364 TRP HE1 H N N 365 TRP HE3 H N N 366 TRP HZ2 H N N 367 TRP HZ3 H N N 368 TRP HH2 H N N 369 TRP HXT H N N 370 TYR N N N N 371 TYR CA C N S 372 TYR C C N N 373 TYR O O N N 374 TYR CB C N N 375 TYR CG C Y N 376 TYR CD1 C Y N 377 TYR CD2 C Y N 378 TYR CE1 C Y N 379 TYR CE2 C Y N 380 TYR CZ C Y N 381 TYR OH O N N 382 TYR OXT O N N 383 TYR H H N N 384 TYR H2 H N N 385 TYR HA H N N 386 TYR HB2 H N N 387 TYR HB3 H N N 388 TYR HD1 H N N 389 TYR HD2 H N N 390 TYR HE1 H N N 391 TYR HE2 H N N 392 TYR HH H N N 393 TYR HXT H N N 394 UAP S S N N 395 UAP C1 C N R 396 UAP O1 O N N 397 UAP C2 C N R 398 UAP O2 O N N 399 UAP C3 C N S 400 UAP O3 O N N 401 UAP C4 C N N 402 UAP C5 C N N 403 UAP O5 O N N 404 UAP C6 C N N 405 UAP O1S O N N 406 UAP O2S O N N 407 UAP O3S O N N 408 UAP O6B O N N 409 UAP O6A O N N 410 UAP H1 H N N 411 UAP HO1 H N N 412 UAP H2 H N N 413 UAP H3 H N N 414 UAP HO3 H N N 415 UAP H4 H N N 416 UAP HO1S H N N 417 UAP HO6B H N N 418 VAL N N N N 419 VAL CA C N S 420 VAL C C N N 421 VAL O O N N 422 VAL CB C N N 423 VAL CG1 C N N 424 VAL CG2 C N N 425 VAL OXT O N N 426 VAL H H N N 427 VAL H2 H N N 428 VAL HA H N N 429 VAL HB H N N 430 VAL HG11 H N N 431 VAL HG12 H N N 432 VAL HG13 H N N 433 VAL HG21 H N N 434 VAL HG22 H N N 435 VAL HG23 H N N 436 VAL HXT H N N 437 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 HIS N CA sing N N 120 HIS N H sing N N 121 HIS N H2 sing N N 122 HIS CA C sing N N 123 HIS CA CB sing N N 124 HIS CA HA sing N N 125 HIS C O doub N N 126 HIS C OXT sing N N 127 HIS CB CG sing N N 128 HIS CB HB2 sing N N 129 HIS CB HB3 sing N N 130 HIS CG ND1 sing Y N 131 HIS CG CD2 doub Y N 132 HIS ND1 CE1 doub Y N 133 HIS ND1 HD1 sing N N 134 HIS CD2 NE2 sing Y N 135 HIS CD2 HD2 sing N N 136 HIS CE1 NE2 sing Y N 137 HIS CE1 HE1 sing N N 138 HIS NE2 HE2 sing N N 139 HIS OXT HXT sing N N 140 HOH O H1 sing N N 141 HOH O H2 sing N N 142 ILE N CA sing N N 143 ILE N H sing N N 144 ILE N H2 sing N N 145 ILE CA C sing N N 146 ILE CA CB sing N N 147 ILE CA HA sing N N 148 ILE C O doub N N 149 ILE C OXT sing N N 150 ILE CB CG1 sing N N 151 ILE CB CG2 sing N N 152 ILE CB HB sing N N 153 ILE CG1 CD1 sing N N 154 ILE CG1 HG12 sing N N 155 ILE CG1 HG13 sing N N 156 ILE CG2 HG21 sing N N 157 ILE CG2 HG22 sing N N 158 ILE CG2 HG23 sing N N 159 ILE CD1 HD11 sing N N 160 ILE CD1 HD12 sing N N 161 ILE CD1 HD13 sing N N 162 ILE OXT HXT sing N N 163 LEU N CA sing N N 164 LEU N H sing N N 165 LEU N H2 sing N N 166 LEU CA C sing N N 167 LEU CA CB sing N N 168 LEU CA HA sing N N 169 LEU C O doub N N 170 LEU C OXT sing N N 171 LEU CB CG sing N N 172 LEU CB HB2 sing N N 173 LEU CB HB3 sing N N 174 LEU CG CD1 sing N N 175 LEU CG CD2 sing N N 176 LEU CG HG sing N N 177 LEU CD1 HD11 sing N N 178 LEU CD1 HD12 sing N N 179 LEU CD1 HD13 sing N N 180 LEU CD2 HD21 sing N N 181 LEU CD2 HD22 sing N N 182 LEU CD2 HD23 sing N N 183 LEU OXT HXT sing N N 184 LYS N CA sing N N 185 LYS N H sing N N 186 LYS N H2 sing N N 187 LYS CA C sing N N 188 LYS CA CB sing N N 189 LYS CA HA sing N N 190 LYS C O doub N N 191 LYS C OXT sing N N 192 LYS CB CG sing N N 193 LYS CB HB2 sing N N 194 LYS CB HB3 sing N N 195 LYS CG CD sing N N 196 LYS CG HG2 sing N N 197 LYS CG HG3 sing N N 198 LYS CD CE sing N N 199 LYS CD HD2 sing N N 200 LYS CD HD3 sing N N 201 LYS CE NZ sing N N 202 LYS CE HE2 sing N N 203 LYS CE HE3 sing N N 204 LYS NZ HZ1 sing N N 205 LYS NZ HZ2 sing N N 206 LYS NZ HZ3 sing N N 207 LYS OXT HXT sing N N 208 MET N CA sing N N 209 MET N H sing N N 210 MET N H2 sing N N 211 MET CA C sing N N 212 MET CA CB sing N N 213 MET CA HA sing N N 214 MET C O doub N N 215 MET C OXT sing N N 216 MET CB CG sing N N 217 MET CB HB2 sing N N 218 MET CB HB3 sing N N 219 MET CG SD sing N N 220 MET CG HG2 sing N N 221 MET CG HG3 sing N N 222 MET SD CE sing N N 223 MET CE HE1 sing N N 224 MET CE HE2 sing N N 225 MET CE HE3 sing N N 226 MET OXT HXT sing N N 227 PHE N CA sing N N 228 PHE N H sing N N 229 PHE N H2 sing N N 230 PHE CA C sing N N 231 PHE CA CB sing N N 232 PHE CA HA sing N N 233 PHE C O doub N N 234 PHE C OXT sing N N 235 PHE CB CG sing N N 236 PHE CB HB2 sing N N 237 PHE CB HB3 sing N N 238 PHE CG CD1 doub Y N 239 PHE CG CD2 sing Y N 240 PHE CD1 CE1 sing Y N 241 PHE CD1 HD1 sing N N 242 PHE CD2 CE2 doub Y N 243 PHE CD2 HD2 sing N N 244 PHE CE1 CZ doub Y N 245 PHE CE1 HE1 sing N N 246 PHE CE2 CZ sing Y N 247 PHE CE2 HE2 sing N N 248 PHE CZ HZ sing N N 249 PHE OXT HXT sing N N 250 PRO N CA sing N N 251 PRO N CD sing N N 252 PRO N H sing N N 253 PRO CA C sing N N 254 PRO CA CB sing N N 255 PRO CA HA sing N N 256 PRO C O doub N N 257 PRO C OXT sing N N 258 PRO CB CG sing N N 259 PRO CB HB2 sing N N 260 PRO CB HB3 sing N N 261 PRO CG CD sing N N 262 PRO CG HG2 sing N N 263 PRO CG HG3 sing N N 264 PRO CD HD2 sing N N 265 PRO CD HD3 sing N N 266 PRO OXT HXT sing N N 267 SER N CA sing N N 268 SER N H sing N N 269 SER N H2 sing N N 270 SER CA C sing N N 271 SER CA CB sing N N 272 SER CA HA sing N N 273 SER C O doub N N 274 SER C OXT sing N N 275 SER CB OG sing N N 276 SER CB HB2 sing N N 277 SER CB HB3 sing N N 278 SER OG HG sing N N 279 SER OXT HXT sing N N 280 SGN C1 C2 sing N N 281 SGN C1 O1 sing N N 282 SGN C1 O5 sing N N 283 SGN C1 H1 sing N N 284 SGN C2 C3 sing N N 285 SGN C2 N2 sing N N 286 SGN C2 H2 sing N N 287 SGN C3 C4 sing N N 288 SGN C3 O3 sing N N 289 SGN C3 H3 sing N N 290 SGN C4 C5 sing N N 291 SGN C4 O4 sing N N 292 SGN C4 H4 sing N N 293 SGN C5 C6 sing N N 294 SGN C5 O5 sing N N 295 SGN C5 H5 sing N N 296 SGN C6 O6 sing N N 297 SGN C6 H61 sing N N 298 SGN C6 H62 sing N N 299 SGN N2 S1 sing N N 300 SGN N2 HN21 sing N N 301 SGN O1 HO1 sing N N 302 SGN O3 HO3 sing N N 303 SGN O4 HO4 sing N N 304 SGN O6 S2 sing N N 305 SGN S1 O1S doub N N 306 SGN S1 O2S doub N N 307 SGN S1 O3S sing N N 308 SGN O3S HOS3 sing N N 309 SGN S2 O4S doub N N 310 SGN S2 O5S doub N N 311 SGN S2 O6S sing N N 312 SGN O6S HOS6 sing N N 313 THR N CA sing N N 314 THR N H sing N N 315 THR N H2 sing N N 316 THR CA C sing N N 317 THR CA CB sing N N 318 THR CA HA sing N N 319 THR C O doub N N 320 THR C OXT sing N N 321 THR CB OG1 sing N N 322 THR CB CG2 sing N N 323 THR CB HB sing N N 324 THR OG1 HG1 sing N N 325 THR CG2 HG21 sing N N 326 THR CG2 HG22 sing N N 327 THR CG2 HG23 sing N N 328 THR OXT HXT sing N N 329 TRP N CA sing N N 330 TRP N H sing N N 331 TRP N H2 sing N N 332 TRP CA C sing N N 333 TRP CA CB sing N N 334 TRP CA HA sing N N 335 TRP C O doub N N 336 TRP C OXT sing N N 337 TRP CB CG sing N N 338 TRP CB HB2 sing N N 339 TRP CB HB3 sing N N 340 TRP CG CD1 doub Y N 341 TRP CG CD2 sing Y N 342 TRP CD1 NE1 sing Y N 343 TRP CD1 HD1 sing N N 344 TRP CD2 CE2 doub Y N 345 TRP CD2 CE3 sing Y N 346 TRP NE1 CE2 sing Y N 347 TRP NE1 HE1 sing N N 348 TRP CE2 CZ2 sing Y N 349 TRP CE3 CZ3 doub Y N 350 TRP CE3 HE3 sing N N 351 TRP CZ2 CH2 doub Y N 352 TRP CZ2 HZ2 sing N N 353 TRP CZ3 CH2 sing Y N 354 TRP CZ3 HZ3 sing N N 355 TRP CH2 HH2 sing N N 356 TRP OXT HXT sing N N 357 TYR N CA sing N N 358 TYR N H sing N N 359 TYR N H2 sing N N 360 TYR CA C sing N N 361 TYR CA CB sing N N 362 TYR CA HA sing N N 363 TYR C O doub N N 364 TYR C OXT sing N N 365 TYR CB CG sing N N 366 TYR CB HB2 sing N N 367 TYR CB HB3 sing N N 368 TYR CG CD1 doub Y N 369 TYR CG CD2 sing Y N 370 TYR CD1 CE1 sing Y N 371 TYR CD1 HD1 sing N N 372 TYR CD2 CE2 doub Y N 373 TYR CD2 HD2 sing N N 374 TYR CE1 CZ doub Y N 375 TYR CE1 HE1 sing N N 376 TYR CE2 CZ sing Y N 377 TYR CE2 HE2 sing N N 378 TYR CZ OH sing N N 379 TYR OH HH sing N N 380 TYR OXT HXT sing N N 381 UAP O2 S sing N N 382 UAP S O2S doub N N 383 UAP S O3S doub N N 384 UAP S O1S sing N N 385 UAP O5 C1 sing N N 386 UAP O1 C1 sing N N 387 UAP C1 C2 sing N N 388 UAP C1 H1 sing N N 389 UAP O1 HO1 sing N N 390 UAP C3 C2 sing N N 391 UAP C2 O2 sing N N 392 UAP C2 H2 sing N N 393 UAP C4 C3 sing N N 394 UAP O3 C3 sing N N 395 UAP C3 H3 sing N N 396 UAP O3 HO3 sing N N 397 UAP C5 C4 doub N N 398 UAP C4 H4 sing N N 399 UAP C6 C5 sing N N 400 UAP C5 O5 sing N N 401 UAP O6A C6 doub N N 402 UAP O6B C6 sing N N 403 UAP O1S HO1S sing N N 404 UAP O6B HO6B sing N N 405 VAL N CA sing N N 406 VAL N H sing N N 407 VAL N H2 sing N N 408 VAL CA C sing N N 409 VAL CA CB sing N N 410 VAL CA HA sing N N 411 VAL C O doub N N 412 VAL C OXT sing N N 413 VAL CB CG1 sing N N 414 VAL CB CG2 sing N N 415 VAL CB HB sing N N 416 VAL CG1 HG11 sing N N 417 VAL CG1 HG12 sing N N 418 VAL CG1 HG13 sing N N 419 VAL CG2 HG21 sing N N 420 VAL CG2 HG22 sing N N 421 VAL CG2 HG23 sing N N 422 VAL OXT HXT sing N N 423 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 SGN 1 n 2 UAP 2 n # _atom_sites.entry_id 2NWG _atom_sites.fract_transf_matrix[1][1] 0.027403 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017555 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013938 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_