HEADER TRANSFERASE 17-NOV-06 2NXE TITLE T. THERMOPHILUS RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE (PRMA) IN TITLE 2 COMPLEX WITH S-ADENOSYL-L-METHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L11 MTASE; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: PRMA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30B KEYWDS S-ADENOSYL-L-METHIONINE DEPENDENT METHYLTRANSFERASE, POSTRANSLATIONAL KEYWDS 2 MODIFICATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.DEMIRCI,S.T.GREGORY,A.E.DAHLBERG,G.JOGL REVDAT 5 30-AUG-23 2NXE 1 REMARK REVDAT 4 13-JUL-11 2NXE 1 VERSN REVDAT 3 24-FEB-09 2NXE 1 VERSN REVDAT 2 06-FEB-07 2NXE 1 JRNL REVDAT 1 26-DEC-06 2NXE 0 JRNL AUTH H.DEMIRCI,S.T.GREGORY,A.E.DAHLBERG,G.JOGL JRNL TITL RECOGNITION OF RIBOSOMAL PROTEIN L11 BY THE PROTEIN JRNL TITL 2 TRIMETHYLTRANSFERASE PRMA. JRNL REF EMBO J. V. 26 567 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17215866 JRNL DOI 10.1038/SJ.EMBOJ.7601508 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 56389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4133 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 250 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3860 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 291 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.645 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4029 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5499 ; 1.705 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 499 ; 6.161 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;32.060 ;22.395 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 601 ;16.893 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.251 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 589 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3122 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1896 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2669 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 302 ; 0.382 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2563 ; 1.006 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3965 ; 1.524 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1723 ; 2.367 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1534 ; 3.592 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8657 -22.8502 24.5819 REMARK 3 T TENSOR REMARK 3 T11: -0.0924 T22: 0.2063 REMARK 3 T33: -0.1001 T12: -0.0004 REMARK 3 T13: 0.0396 T23: -0.0737 REMARK 3 L TENSOR REMARK 3 L11: 4.0695 L22: 1.5293 REMARK 3 L33: 0.6754 L12: 0.4312 REMARK 3 L13: 0.7627 L23: -0.4792 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: 0.4571 S13: -0.2453 REMARK 3 S21: -0.0343 S22: -0.0119 S23: 0.0214 REMARK 3 S31: 0.1580 S32: 0.4618 S33: -0.0247 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1859 -25.4495 14.9401 REMARK 3 T TENSOR REMARK 3 T11: -0.0307 T22: -0.0258 REMARK 3 T33: -0.0069 T12: -0.0609 REMARK 3 T13: 0.0663 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.4917 L22: 1.1041 REMARK 3 L33: 0.3249 L12: 0.2871 REMARK 3 L13: -0.2898 L23: -0.3268 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: -0.0385 S13: -0.1097 REMARK 3 S21: 0.0085 S22: -0.0387 S23: 0.0484 REMARK 3 S31: 0.0167 S32: -0.0096 S33: 0.0535 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 53 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5583 -17.6885 -5.0309 REMARK 3 T TENSOR REMARK 3 T11: -0.0793 T22: 0.0411 REMARK 3 T33: -0.0708 T12: -0.0547 REMARK 3 T13: 0.0639 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 7.4690 L22: 1.6500 REMARK 3 L33: 2.1125 L12: -1.4273 REMARK 3 L13: -1.3494 L23: 0.4273 REMARK 3 S TENSOR REMARK 3 S11: -0.3830 S12: -0.1104 S13: -0.1507 REMARK 3 S21: 0.0863 S22: 0.2622 S23: 0.0975 REMARK 3 S31: 0.0417 S32: 0.0530 S33: 0.1208 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 67 B 254 REMARK 3 ORIGIN FOR THE GROUP (A): 47.9619 -7.2631 -1.0242 REMARK 3 T TENSOR REMARK 3 T11: -0.0305 T22: -0.0115 REMARK 3 T33: -0.0444 T12: -0.0070 REMARK 3 T13: 0.0139 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.9771 L22: 0.8103 REMARK 3 L33: 0.9657 L12: -0.2248 REMARK 3 L13: -0.3849 L23: 0.1942 REMARK 3 S TENSOR REMARK 3 S11: -0.0883 S12: -0.0022 S13: 0.0047 REMARK 3 S21: 0.0560 S22: 0.0158 S23: 0.0298 REMARK 3 S31: 0.0533 S32: -0.0623 S33: 0.0725 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59391 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.43400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO, PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2NXC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 190 MM CALCIUM CHLORIDE DIHYDRATE, REMARK 280 95MM HEPES-NA, PH 7.5, 26.6% V/V PEG400, 5% GLYCEROL, MICROBATCH REMARK 280 UNDER OIL, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 93.58950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.03392 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 15.06300 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 93.58950 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 54.03392 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.06300 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 93.58950 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 54.03392 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.06300 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 108.06785 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 30.12600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 108.06785 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 30.12600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 108.06785 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 30.12600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 56 REMARK 465 GLU B 57 REMARK 465 ASP B 58 REMARK 465 TRP B 59 REMARK 465 LEU B 60 REMARK 465 GLU B 61 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 192 O HOH A 336 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 28 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 LEU B 28 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 31 -168.36 -122.91 REMARK 500 ASP A 56 1.32 45.58 REMARK 500 SER A 175 -156.45 -120.95 REMARK 500 LEU A 192 -113.00 -123.69 REMARK 500 LEU A 239 -64.55 -109.33 REMARK 500 ARG B 31 -166.57 -116.95 REMARK 500 VAL B 54 -93.57 -129.52 REMARK 500 SER B 175 -148.67 -132.78 REMARK 500 LEU B 192 -117.79 -124.49 REMARK 500 LEU B 239 -138.84 -106.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UFK RELATED DB: PDB REMARK 900 T. THERMOPHILUS PRMA AT 1.9 A RESOLUTION REMARK 900 RELATED ID: 1NXC RELATED DB: PDB REMARK 900 T. THERMOPHILUS PRMA AT 1.59A RESOLUTION REMARK 900 RELATED ID: 2NXJ RELATED DB: PDB REMARK 900 RELATED ID: 2NXN RELATED DB: PDB DBREF 2NXE A 1 254 UNP Q84BQ9 PRMA_THET8 1 254 DBREF 2NXE B 1 254 UNP Q84BQ9 PRMA_THET8 1 254 SEQRES 1 A 254 MET TRP VAL TYR ARG LEU LYS GLY THR LEU GLU ALA LEU SEQRES 2 A 254 ASP PRO ILE LEU PRO GLY LEU PHE ASP GLY GLY ALA ARG SEQRES 3 A 254 GLY LEU TRP GLU ARG GLU GLY GLU VAL TRP ALA PHE PHE SEQRES 4 A 254 PRO ALA PRO VAL ASP LEU PRO TYR GLU GLY VAL TRP GLU SEQRES 5 A 254 GLU VAL GLY ASP GLU ASP TRP LEU GLU ALA TRP ARG ARG SEQRES 6 A 254 ASP LEU LYS PRO ALA LEU ALA PRO PRO PHE VAL VAL LEU SEQRES 7 A 254 ALA PRO TRP HIS THR TRP GLU GLY ALA GLU ILE PRO LEU SEQRES 8 A 254 VAL ILE GLU PRO GLY MET ALA PHE GLY THR GLY HIS HIS SEQRES 9 A 254 GLU THR THR ARG LEU ALA LEU LYS ALA LEU ALA ARG HIS SEQRES 10 A 254 LEU ARG PRO GLY ASP LYS VAL LEU ASP LEU GLY THR GLY SEQRES 11 A 254 SER GLY VAL LEU ALA ILE ALA ALA GLU LYS LEU GLY GLY SEQRES 12 A 254 LYS ALA LEU GLY VAL ASP ILE ASP PRO MET VAL LEU PRO SEQRES 13 A 254 GLN ALA GLU ALA ASN ALA LYS ARG ASN GLY VAL ARG PRO SEQRES 14 A 254 ARG PHE LEU GLU GLY SER LEU GLU ALA ALA LEU PRO PHE SEQRES 15 A 254 GLY PRO PHE ASP LEU LEU VAL ALA ASN LEU TYR ALA GLU SEQRES 16 A 254 LEU HIS ALA ALA LEU ALA PRO ARG TYR ARG GLU ALA LEU SEQRES 17 A 254 VAL PRO GLY GLY ARG ALA LEU LEU THR GLY ILE LEU LYS SEQRES 18 A 254 ASP ARG ALA PRO LEU VAL ARG GLU ALA MET ALA GLY ALA SEQRES 19 A 254 GLY PHE ARG PRO LEU GLU GLU ALA ALA GLU GLY GLU TRP SEQRES 20 A 254 VAL LEU LEU ALA TYR GLY ARG SEQRES 1 B 254 MET TRP VAL TYR ARG LEU LYS GLY THR LEU GLU ALA LEU SEQRES 2 B 254 ASP PRO ILE LEU PRO GLY LEU PHE ASP GLY GLY ALA ARG SEQRES 3 B 254 GLY LEU TRP GLU ARG GLU GLY GLU VAL TRP ALA PHE PHE SEQRES 4 B 254 PRO ALA PRO VAL ASP LEU PRO TYR GLU GLY VAL TRP GLU SEQRES 5 B 254 GLU VAL GLY ASP GLU ASP TRP LEU GLU ALA TRP ARG ARG SEQRES 6 B 254 ASP LEU LYS PRO ALA LEU ALA PRO PRO PHE VAL VAL LEU SEQRES 7 B 254 ALA PRO TRP HIS THR TRP GLU GLY ALA GLU ILE PRO LEU SEQRES 8 B 254 VAL ILE GLU PRO GLY MET ALA PHE GLY THR GLY HIS HIS SEQRES 9 B 254 GLU THR THR ARG LEU ALA LEU LYS ALA LEU ALA ARG HIS SEQRES 10 B 254 LEU ARG PRO GLY ASP LYS VAL LEU ASP LEU GLY THR GLY SEQRES 11 B 254 SER GLY VAL LEU ALA ILE ALA ALA GLU LYS LEU GLY GLY SEQRES 12 B 254 LYS ALA LEU GLY VAL ASP ILE ASP PRO MET VAL LEU PRO SEQRES 13 B 254 GLN ALA GLU ALA ASN ALA LYS ARG ASN GLY VAL ARG PRO SEQRES 14 B 254 ARG PHE LEU GLU GLY SER LEU GLU ALA ALA LEU PRO PHE SEQRES 15 B 254 GLY PRO PHE ASP LEU LEU VAL ALA ASN LEU TYR ALA GLU SEQRES 16 B 254 LEU HIS ALA ALA LEU ALA PRO ARG TYR ARG GLU ALA LEU SEQRES 17 B 254 VAL PRO GLY GLY ARG ALA LEU LEU THR GLY ILE LEU LYS SEQRES 18 B 254 ASP ARG ALA PRO LEU VAL ARG GLU ALA MET ALA GLY ALA SEQRES 19 B 254 GLY PHE ARG PRO LEU GLU GLU ALA ALA GLU GLY GLU TRP SEQRES 20 B 254 VAL LEU LEU ALA TYR GLY ARG HET SAM A 302 27 HET SAM B 303 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 5 HOH *291(H2 O) HELIX 1 1 THR A 9 ASP A 14 1 6 HELIX 2 2 ILE A 16 GLY A 23 1 8 HELIX 3 3 ASP A 58 LEU A 67 1 10 HELIX 4 4 HIS A 104 LEU A 118 1 15 HELIX 5 5 GLY A 132 LEU A 141 1 10 HELIX 6 6 ASP A 151 MET A 153 5 3 HELIX 7 7 VAL A 154 ASN A 165 1 12 HELIX 8 8 SER A 175 LEU A 180 1 6 HELIX 9 9 PRO A 181 GLY A 183 5 3 HELIX 10 10 TYR A 193 ALA A 207 1 15 HELIX 11 11 ARG A 223 ALA A 234 1 12 HELIX 12 12 LEU B 13 PRO B 15 5 3 HELIX 13 13 ILE B 16 GLY B 23 1 8 HELIX 14 14 ALA B 62 LEU B 67 1 6 HELIX 15 15 HIS B 104 LEU B 118 1 15 HELIX 16 16 GLY B 132 LEU B 141 1 10 HELIX 17 17 ASP B 151 MET B 153 5 3 HELIX 18 18 VAL B 154 ASN B 165 1 12 HELIX 19 19 SER B 175 LEU B 180 1 6 HELIX 20 20 PRO B 181 GLY B 183 5 3 HELIX 21 21 TYR B 193 ALA B 207 1 15 HELIX 22 22 ARG B 223 ALA B 234 1 12 SHEET 1 A 4 GLY A 27 ARG A 31 0 SHEET 2 A 4 GLU A 34 PHE A 39 -1 O GLU A 34 N ARG A 31 SHEET 3 A 4 TRP A 2 LYS A 7 -1 N TRP A 2 O PHE A 39 SHEET 4 A 4 VAL A 50 GLU A 53 -1 O GLU A 52 N VAL A 3 SHEET 1 B 3 ALA A 70 ALA A 72 0 SHEET 2 B 3 PHE A 75 LEU A 78 -1 O VAL A 77 N ALA A 70 SHEET 3 B 3 ILE A 89 VAL A 92 1 O LEU A 91 N LEU A 78 SHEET 1 C 7 ARG A 170 GLU A 173 0 SHEET 2 C 7 LYS A 144 ASP A 149 1 N GLY A 147 O ARG A 170 SHEET 3 C 7 LYS A 123 LEU A 127 1 N ASP A 126 O LEU A 146 SHEET 4 C 7 PHE A 185 ASN A 191 1 O VAL A 189 N LEU A 125 SHEET 5 C 7 LEU A 208 LEU A 220 1 O LEU A 215 N LEU A 188 SHEET 6 C 7 TRP A 247 GLY A 253 -1 O LEU A 250 N LEU A 216 SHEET 7 C 7 ARG A 237 GLU A 244 -1 N ARG A 237 O GLY A 253 SHEET 1 D 4 GLY B 27 GLU B 30 0 SHEET 2 D 4 GLU B 34 PHE B 39 -1 O TRP B 36 N TRP B 29 SHEET 3 D 4 TRP B 2 LYS B 7 -1 N TRP B 2 O PHE B 39 SHEET 4 D 4 VAL B 50 GLU B 53 -1 O GLU B 52 N VAL B 3 SHEET 1 E 3 ALA B 70 ALA B 72 0 SHEET 2 E 3 PHE B 75 LEU B 78 -1 O VAL B 77 N ALA B 70 SHEET 3 E 3 ILE B 89 VAL B 92 1 O LEU B 91 N LEU B 78 SHEET 1 F 7 ARG B 170 GLU B 173 0 SHEET 2 F 7 LYS B 144 ASP B 149 1 N GLY B 147 O ARG B 170 SHEET 3 F 7 LYS B 123 LEU B 127 1 N ASP B 126 O LEU B 146 SHEET 4 F 7 PHE B 185 ASN B 191 1 O VAL B 189 N LEU B 125 SHEET 5 F 7 LEU B 208 LEU B 220 1 O LEU B 215 N LEU B 188 SHEET 6 F 7 TRP B 247 GLY B 253 -1 O LEU B 250 N LEU B 216 SHEET 7 F 7 ARG B 237 GLU B 244 -1 N ARG B 237 O GLY B 253 CISPEP 1 PRO A 73 PRO A 74 0 9.49 CISPEP 2 GLY A 183 PRO A 184 0 2.33 CISPEP 3 PRO B 73 PRO B 74 0 7.77 CISPEP 4 GLY B 183 PRO B 184 0 2.18 SITE 1 AC1 21 PHE A 99 GLY A 100 THR A 107 ASP A 126 SITE 2 AC1 21 GLY A 128 THR A 129 GLY A 130 LEU A 134 SITE 3 AC1 21 ASP A 149 ILE A 150 GLY A 174 SER A 175 SITE 4 AC1 21 ASN A 191 LEU A 192 LEU A 196 HOH A 306 SITE 5 AC1 21 HOH A 312 HOH A 318 HOH A 336 HOH A 373 SITE 6 AC1 21 HOH A 410 SITE 1 AC2 23 PHE B 99 GLY B 100 THR B 107 ASP B 126 SITE 2 AC2 23 GLY B 128 THR B 129 GLY B 130 LEU B 134 SITE 3 AC2 23 ASP B 149 ILE B 150 GLY B 174 SER B 175 SITE 4 AC2 23 ASN B 191 LEU B 192 LEU B 196 HOH B 308 SITE 5 AC2 23 HOH B 310 HOH B 318 HOH B 325 HOH B 334 SITE 6 AC2 23 HOH B 341 HOH B 395 HOH B 450 CRYST1 187.179 187.179 45.189 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005342 0.003084 0.000000 0.00000 SCALE2 0.000000 0.006169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022129 0.00000