HEADER TRANSFERASE 20-NOV-06 2NXV TITLE STRUCTURE OF THE 6TH ORF OF THE RHODOBACTER BLASTICA ATPASE OPERON; TITLE 2 MAJASTRIDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE SUBUNITS REGION ORF 6; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER BLASTICUS; SOURCE 3 ORGANISM_TAXID: 1075; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MAJASTRIDIN, ATPASE OPERON, GLYCOSYL TRANSFERASE, ROSSMANN FOLD, KEYWDS 2 SULPHUR SAD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ENROTH,A.STRID REVDAT 6 27-DEC-23 2NXV 1 REMARK REVDAT 5 07-MAR-18 2NXV 1 REMARK REVDAT 4 13-JUL-11 2NXV 1 VERSN REVDAT 3 19-JAN-10 2NXV 1 JRNL REVDAT 2 24-FEB-09 2NXV 1 VERSN REVDAT 1 18-DEC-07 2NXV 0 JRNL AUTH C.ENROTH,A.STRID JRNL TITL CRYSTAL STRUCTURE OF A PROTEIN, STRUCTURALLY RELATED TO JRNL TITL 2 GLYCOSYLTRANSFERASES, ENCODED IN THE RHODOBACTER BLASTICUS JRNL TITL 3 ATP OPERON. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1784 379 2008 JRNL REFN ISSN 0006-3002 JRNL PMID 18067873 JRNL DOI 10.1016/J.BBAPAP.2007.11.005 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 280096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 14868 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 13521 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 754 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4041 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 833 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.023 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.014 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.657 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4264 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5799 ; 1.638 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 531 ; 6.531 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;29.693 ;22.627 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 682 ;11.125 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;16.814 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 591 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3415 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1963 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2942 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 660 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.135 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 70 ; 0.394 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2565 ; 1.949 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4050 ; 2.659 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1905 ; 3.766 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1731 ; 5.271 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4376 ; 1.804 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 927 ; 7.129 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4054 ; 4.527 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 249 REMARK 3 RESIDUE RANGE : A 1201 A 1201 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3910 -1.8000 80.7740 REMARK 3 T TENSOR REMARK 3 T11: -0.0066 T22: 0.0042 REMARK 3 T33: -0.0035 T12: 0.0000 REMARK 3 T13: 0.0004 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0261 L22: 0.0147 REMARK 3 L33: 0.0350 L12: -0.0075 REMARK 3 L13: -0.0173 L23: 0.0020 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0033 S13: -0.0013 REMARK 3 S21: 0.0007 S22: -0.0011 S23: 0.0016 REMARK 3 S31: -0.0015 S32: -0.0007 S33: 0.0008 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 249 REMARK 3 RESIDUE RANGE : B 1202 B 1202 REMARK 3 ORIGIN FOR THE GROUP (A): 36.8300 5.3350 53.1450 REMARK 3 T TENSOR REMARK 3 T11: -0.0063 T22: 0.0037 REMARK 3 T33: -0.0035 T12: 0.0005 REMARK 3 T13: -0.0002 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0344 L22: 0.0099 REMARK 3 L33: 0.0390 L12: -0.0101 REMARK 3 L13: 0.0155 L23: 0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.0034 S13: 0.0007 REMARK 3 S21: -0.0010 S22: -0.0034 S23: 0.0006 REMARK 3 S31: -0.0007 S32: -0.0009 S33: 0.0010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040437. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 295175 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 72.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.35500 REMARK 200 R SYM FOR SHELL (I) : 0.35500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD BASED ON NATIVE REMARK 200 SULPHURS REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 60.93650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.15550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.93650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.15550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 121.87300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1228 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1213 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1620 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 SD CE REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 LYS A 11 CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 LYS B 11 CD CE NZ REMARK 470 ARG B 249 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS B 213 O HOH B 1376 1.83 REMARK 500 O HOH B 1582 O HOH B 1584 1.86 REMARK 500 O HOH A 1575 O HOH A 1578 1.90 REMARK 500 O HOH B 1383 O HOH B 1596 2.02 REMARK 500 O HOH A 1571 O HOH B 1585 2.03 REMARK 500 NH1 ARG A 76 O HOH A 1557 2.06 REMARK 500 O HOH A 1384 O HOH A 1552 2.06 REMARK 500 OE1 GLN A 173 O HOH A 1428 2.07 REMARK 500 O HOH A 1545 O HOH A 1572 2.09 REMARK 500 O HOH A 1425 O HOH A 1476 2.09 REMARK 500 O HOH A 1586 O HOH B 1370 2.11 REMARK 500 O HOH B 1464 O HOH B 1466 2.12 REMARK 500 O HOH A 1555 O HOH B 1463 2.14 REMARK 500 O HOH B 1565 O HOH B 1611 2.14 REMARK 500 O HOH A 1276 O HOH A 1611 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1611 O HOH B 1322 2655 1.97 REMARK 500 NH2 ARG B 25 O HOH A 1587 3557 2.05 REMARK 500 O HOH A 1573 O HOH B 1604 3547 2.13 REMARK 500 O HOH B 1613 O HOH B 1615 2655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 39 CZ ARG A 39 NH2 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 25 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 89 -59.52 -154.42 REMARK 500 PHE A 157 116.89 -160.05 REMARK 500 ASP B 89 -60.54 -156.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1202 DBREF 2NXV A 1 249 UNP P05449 YAT6_RHOBL 1 249 DBREF 2NXV B 1 249 UNP P05449 YAT6_RHOBL 1 249 SEQRES 1 A 249 MET LYS PRO VAL PRO THR TYR VAL GLN ASP LYS ASP GLU SEQRES 2 A 249 SER THR LEU MET PHE SER VAL CYS SER LEU VAL ARG ASP SEQRES 3 A 249 GLN ALA LYS TYR ASP ARG LEU LEU GLU SER PHE GLU ARG SEQRES 4 A 249 PHE GLY PHE THR PRO ASP LYS ALA GLU PHE LEU ALA ALA SEQRES 5 A 249 ASP ASN ARG GLU GLY ASN GLN PHE HIS GLY PHE SER TRP SEQRES 6 A 249 HIS LYS GLN MET LEU PRO ARG CYS LYS GLY ARG TYR VAL SEQRES 7 A 249 ILE PHE CYS HIS GLU ASP VAL GLU LEU VAL ASP ARG GLY SEQRES 8 A 249 TYR ASP ASP LEU VAL ALA ALA ILE GLU ALA LEU GLU GLU SEQRES 9 A 249 ALA ASP PRO LYS TRP LEU VAL ALA GLY VAL ALA GLY SER SEQRES 10 A 249 PRO TRP ARG PRO LEU ASN HIS SER VAL THR ALA GLN ALA SEQRES 11 A 249 LEU HIS ILE SER ASP VAL PHE GLY ASN ASP ARG ARG ARG SEQRES 12 A 249 GLY ASN VAL PRO CYS ARG VAL GLU SER LEU ASP GLU CYS SEQRES 13 A 249 PHE LEU LEU MET ARG ARG LEU LYS PRO VAL LEU ASN SER SEQRES 14 A 249 TYR ASP MET GLN GLY PHE HIS TYR TYR GLY ALA ASP LEU SEQRES 15 A 249 CYS LEU GLN ALA GLU PHE LEU GLY GLY ARG ALA TYR ALA SEQRES 16 A 249 ILE ASP PHE HIS LEU HIS HIS TYR GLY ARG ALA ILE ALA SEQRES 17 A 249 ASP GLU ASN PHE HIS ARG LEU ARG GLN GLU MET ALA GLN SEQRES 18 A 249 LYS TYR ARG ARG TRP PHE PRO GLY ARG ILE LEU HIS CYS SEQRES 19 A 249 VAL THR GLY ARG VAL ALA LEU GLY GLY GLY TRP TYR GLU SEQRES 20 A 249 ALA ARG SEQRES 1 B 249 MET LYS PRO VAL PRO THR TYR VAL GLN ASP LYS ASP GLU SEQRES 2 B 249 SER THR LEU MET PHE SER VAL CYS SER LEU VAL ARG ASP SEQRES 3 B 249 GLN ALA LYS TYR ASP ARG LEU LEU GLU SER PHE GLU ARG SEQRES 4 B 249 PHE GLY PHE THR PRO ASP LYS ALA GLU PHE LEU ALA ALA SEQRES 5 B 249 ASP ASN ARG GLU GLY ASN GLN PHE HIS GLY PHE SER TRP SEQRES 6 B 249 HIS LYS GLN MET LEU PRO ARG CYS LYS GLY ARG TYR VAL SEQRES 7 B 249 ILE PHE CYS HIS GLU ASP VAL GLU LEU VAL ASP ARG GLY SEQRES 8 B 249 TYR ASP ASP LEU VAL ALA ALA ILE GLU ALA LEU GLU GLU SEQRES 9 B 249 ALA ASP PRO LYS TRP LEU VAL ALA GLY VAL ALA GLY SER SEQRES 10 B 249 PRO TRP ARG PRO LEU ASN HIS SER VAL THR ALA GLN ALA SEQRES 11 B 249 LEU HIS ILE SER ASP VAL PHE GLY ASN ASP ARG ARG ARG SEQRES 12 B 249 GLY ASN VAL PRO CYS ARG VAL GLU SER LEU ASP GLU CYS SEQRES 13 B 249 PHE LEU LEU MET ARG ARG LEU LYS PRO VAL LEU ASN SER SEQRES 14 B 249 TYR ASP MET GLN GLY PHE HIS TYR TYR GLY ALA ASP LEU SEQRES 15 B 249 CYS LEU GLN ALA GLU PHE LEU GLY GLY ARG ALA TYR ALA SEQRES 16 B 249 ILE ASP PHE HIS LEU HIS HIS TYR GLY ARG ALA ILE ALA SEQRES 17 B 249 ASP GLU ASN PHE HIS ARG LEU ARG GLN GLU MET ALA GLN SEQRES 18 B 249 LYS TYR ARG ARG TRP PHE PRO GLY ARG ILE LEU HIS CYS SEQRES 19 B 249 VAL THR GLY ARG VAL ALA LEU GLY GLY GLY TRP TYR GLU SEQRES 20 B 249 ALA ARG HET GOL A1201 6 HET GOL B1202 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *833(H2 O) HELIX 1 1 ASP A 26 PHE A 40 1 15 HELIX 2 2 SER A 64 LEU A 70 1 7 HELIX 3 3 PRO A 71 CYS A 73 5 3 HELIX 4 4 GLY A 91 ASP A 106 1 16 HELIX 5 5 TYR A 177 LEU A 189 1 13 HELIX 6 6 ASP A 209 ARG A 224 1 16 HELIX 7 7 GLY A 243 ALA A 248 5 6 HELIX 8 8 ASP B 26 PHE B 40 1 15 HELIX 9 9 SER B 64 LEU B 70 1 7 HELIX 10 10 PRO B 71 CYS B 73 5 3 HELIX 11 11 GLY B 91 ASP B 106 1 16 HELIX 12 12 TYR B 177 LEU B 189 1 13 HELIX 13 13 ASP B 209 ARG B 224 1 16 HELIX 14 14 GLY B 243 ALA B 248 5 6 SHEET 1 A11 THR A 6 VAL A 8 0 SHEET 2 A11 ALA B 47 ASP B 53 1 O ALA B 51 N VAL A 8 SHEET 3 A11 PHE B 18 VAL B 24 1 N VAL B 20 O GLU B 48 SHEET 4 A11 TYR B 77 HIS B 82 1 O ILE B 79 N CYS B 21 SHEET 5 A11 PHE B 157 ARG B 161 -1 O MET B 160 N VAL B 78 SHEET 6 A11 TRP B 109 GLY B 113 -1 N ALA B 112 O LEU B 159 SHEET 7 A11 ARG B 192 ALA B 195 1 O ARG B 192 N LEU B 110 SHEET 8 A11 CYS B 148 LEU B 153 -1 N CYS B 148 O ALA B 195 SHEET 9 A11 ALA B 115 PRO B 118 -1 N SER B 117 O GLU B 151 SHEET 10 A11 ALA B 130 ASP B 135 -1 O ALA B 130 N GLY B 116 SHEET 11 A11 GLY B 138 ARG B 143 -1 O ARG B 141 N ILE B 133 SHEET 1 B11 GLY A 138 ARG A 143 0 SHEET 2 B11 ALA A 130 ASP A 135 -1 N ILE A 133 O ARG A 141 SHEET 3 B11 ALA A 115 PRO A 118 -1 N GLY A 116 O ALA A 130 SHEET 4 B11 CYS A 148 LEU A 153 -1 O GLU A 151 N SER A 117 SHEET 5 B11 ARG A 192 ALA A 195 -1 O ALA A 193 N VAL A 150 SHEET 6 B11 TRP A 109 GLY A 113 1 N LEU A 110 O ARG A 192 SHEET 7 B11 PHE A 157 ARG A 161 -1 O LEU A 159 N ALA A 112 SHEET 8 B11 TYR A 77 HIS A 82 -1 N VAL A 78 O MET A 160 SHEET 9 B11 PHE A 18 VAL A 24 1 N CYS A 21 O ILE A 79 SHEET 10 B11 ALA A 47 ASP A 53 1 O GLU A 48 N VAL A 20 SHEET 11 B11 THR B 6 VAL B 8 1 O VAL B 8 N ALA A 51 SHEET 1 C 2 VAL A 85 GLU A 86 0 SHEET 2 C 2 HIS A 201 HIS A 202 -1 O HIS A 201 N GLU A 86 SHEET 1 D 2 ILE A 231 CYS A 234 0 SHEET 2 D 2 GLY A 237 ALA A 240 -1 O VAL A 239 N LEU A 232 SHEET 1 E 2 VAL B 85 GLU B 86 0 SHEET 2 E 2 HIS B 201 HIS B 202 -1 O HIS B 201 N GLU B 86 SHEET 1 F 2 ILE B 231 CYS B 234 0 SHEET 2 F 2 GLY B 237 ALA B 240 -1 O VAL B 239 N LEU B 232 CISPEP 1 VAL A 146 PRO A 147 0 1.36 CISPEP 2 VAL B 146 PRO B 147 0 1.27 SITE 1 AC1 7 ALA A 115 ILE A 133 ASP A 135 ASP A 154 SITE 2 AC1 7 HIS A 202 VAL A 235 HOH A1258 SITE 1 AC2 8 ALA B 115 ILE B 133 ASP B 135 ASP B 154 SITE 2 AC2 8 HIS B 202 VAL B 235 HOH B1253 HOH B1393 CRYST1 121.873 90.311 69.590 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008205 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014370 0.00000