HEADER LYASE 20-NOV-06 2NYF TITLE CRYSTAL STRUCTURE OF PHENYLALANINE AMMONIA-LYASE FROM NOSTOC TITLE 2 PUNCTIFORME COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOSTOC PUNCTIFORME PHENYLALANINE AMMONIA LYASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.3.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC PUNCTIFORME; SOURCE 3 ORGANISM_TAXID: 63737; SOURCE 4 STRAIN: PCC 73102; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHIS8 KEYWDS METHYLIDENE IMIDAZOLONE PROSTHETIC GROUP (AUTOCATALYTICALLY FORMED BY KEYWDS 2 INTERNAL TRIPEPTIDE SEGMENT ALA167-SER168-GLY169), LYASE EXPDTA X-RAY DIFFRACTION AUTHOR G.V.LOUIE,M.C.MOFFITT,M.E.BOWMAN,J.PENCE,J.P.NOEL,B.S.MOORE REVDAT 5 15-NOV-23 2NYF 1 LINK ATOM REVDAT 4 09-MAY-12 2NYF 1 COMPND REVDAT 3 13-JUL-11 2NYF 1 VERSN REVDAT 2 24-FEB-09 2NYF 1 VERSN REVDAT 1 06-FEB-07 2NYF 0 JRNL AUTH M.C.MOFFITT,G.V.LOUIE,M.E.BOWMAN,J.PENCE,J.P.NOEL,B.S.MOORE JRNL TITL DISCOVERY OF TWO CYANOBACTERIAL PHENYLALANINE AMMONIA JRNL TITL 2 LYASES: KINETIC AND STRUCTURAL CHARACTERIZATION. JRNL REF BIOCHEMISTRY V. 46 1004 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17240984 JRNL DOI 10.1021/BI061774G REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 15884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : RANDOM REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 770 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 74 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.340 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.030 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.290 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 3.010 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.450 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16902 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MOPSO (PH 7.0), 21% (W/V) REMARK 280 POLYETHYLENE GLYCOL 8000, 0.2 M LITHIUM SULFATE, 2 MM REMARK 280 DITHIOTHREITOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.13950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.74300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.54900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.13950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.74300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.54900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.13950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.74300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.54900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.13950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.74300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.54900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE 222 SYMMETRIC HOMOTETRAMER IS GENERATED BY REMARK 300 CRYSTALLOGRAPHIC SYMMETRY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 74.27900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 91.48600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 74.27900 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 151.09800 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 91.48600 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 151.09800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1024 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1027 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ILE A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 7 REMARK 465 GLN A 8 REMARK 465 ASN A 9 REMARK 465 ILE A 10 REMARK 465 THR A 11 REMARK 465 ARG A 12 REMARK 465 SER A 13 REMARK 465 TRP A 14 REMARK 465 GLN A 15 REMARK 465 ILE A 16 REMARK 465 PRO A 17 REMARK 465 PHE A 18 REMARK 465 THR A 19 REMARK 465 ASN A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 ASP A 23 REMARK 465 GLN A 75 REMARK 465 PRO A 76 REMARK 465 ILE A 77 REMARK 465 TYR A 78 REMARK 465 GLY A 79 REMARK 465 VAL A 80 REMARK 465 THR A 81 REMARK 465 SER A 82 REMARK 465 GLY A 83 REMARK 465 PHE A 84 REMARK 465 GLY A 85 REMARK 465 GLY A 86 REMARK 465 MET A 87 REMARK 465 ALA A 88 REMARK 465 ASP A 89 REMARK 465 VAL A 90 REMARK 465 VAL A 91 REMARK 465 LEU A 298 REMARK 465 ASP A 299 REMARK 465 GLY A 300 REMARK 465 LYS A 301 REMARK 465 HIS A 302 REMARK 465 GLU A 303 REMARK 465 TYR A 304 REMARK 465 ARG A 305 REMARK 465 GLY A 306 REMARK 465 LYS A 307 REMARK 465 ASP A 308 REMARK 465 LEU A 309 REMARK 465 ILE A 310 REMARK 465 LYS A 567 REMARK 465 SER A 568 REMARK 465 THR A 569 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 46 152.00 -42.48 REMARK 500 THR A 51 155.54 -44.90 REMARK 500 ASP A 193 18.82 39.77 REMARK 500 LYS A 210 152.11 -40.84 REMARK 500 PRO A 215 -76.98 -21.66 REMARK 500 PRO A 273 50.74 -64.41 REMARK 500 GLN A 355 73.69 38.46 REMARK 500 GLU A 448 75.14 44.13 REMARK 500 GLN A 452 56.73 -104.38 REMARK 500 TRP A 531 -69.93 -103.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 475 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 RESIDUE MDO IS AUTOCATALYTICALLY FORMED REMARK 600 BY INTERNAL TRIPEPTIDE SEGMENT ALA167-SER168-GLY169 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W27 RELATED DB: PDB REMARK 900 PHENYLALANINE AMMONIA-LYASE FROM PARSLEY REMARK 900 RELATED ID: 1Y2M RELATED DB: PDB REMARK 900 PHENYLALANINE AMMONIA-LYASE FROM YEAST REMARK 900 RELATED ID: 1T6J RELATED DB: PDB REMARK 900 PHENYLALANINE AMMONIA-LYASE FROM YEAST REMARK 900 RELATED ID: 1GKM RELATED DB: PDB REMARK 900 HISTIDINE AMMONIA-LYASE FROM PSEUDOMONAS PUTIDA REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO SUITABLE DATABASE REFERENCES WERE REMARK 999 FOUND AT TIME OF PROCESSING DBREF 2NYF A 1 569 PDB 2NYF 2NYF 1 569 SEQRES 1 A 567 MET ASN ILE THR SER LEU GLN GLN ASN ILE THR ARG SER SEQRES 2 A 567 TRP GLN ILE PRO PHE THR ASN SER SER ASP SER ILE VAL SEQRES 3 A 567 THR VAL GLY ASP ARG ASN LEU THR ILE ASP GLU VAL VAL SEQRES 4 A 567 ASN VAL ALA ARG HIS GLY THR GLN VAL ARG LEU THR ASP SEQRES 5 A 567 ASN ALA ASP VAL ILE ARG GLY VAL GLN ALA SER CYS ASP SEQRES 6 A 567 TYR ILE ASN ASN ALA VAL GLU THR ALA GLN PRO ILE TYR SEQRES 7 A 567 GLY VAL THR SER GLY PHE GLY GLY MET ALA ASP VAL VAL SEQRES 8 A 567 ILE SER ARG GLU GLN ALA ALA GLU LEU GLN THR ASN LEU SEQRES 9 A 567 ILE TRP PHE LEU LYS SER GLY ALA GLY ASN LYS LEU SER SEQRES 10 A 567 LEU ALA ASP VAL ARG ALA ALA MET LEU LEU ARG ALA ASN SEQRES 11 A 567 SER HIS LEU TYR GLY ALA SER GLY ILE ARG LEU GLU LEU SEQRES 12 A 567 ILE GLN ARG ILE GLU THR PHE LEU ASN ALA GLY VAL THR SEQRES 13 A 567 PRO HIS VAL TYR GLU PHE GLY SER ILE GLY MDO ASP LEU SEQRES 14 A 567 VAL PRO LEU SER TYR ILE THR GLY ALA LEU ILE GLY LEU SEQRES 15 A 567 ASP PRO SER PHE THR VAL ASP PHE ASP GLY LYS GLU MET SEQRES 16 A 567 ASP ALA VAL THR ALA LEU SER ARG LEU GLY LEU PRO LYS SEQRES 17 A 567 LEU GLN LEU GLN PRO LYS GLU GLY LEU ALA MET MET ASN SEQRES 18 A 567 GLY THR SER VAL MET THR GLY ILE ALA ALA ASN CYS VAL SEQRES 19 A 567 TYR ASP ALA LYS VAL LEU LEU ALA LEU THR MET GLY VAL SEQRES 20 A 567 HIS ALA LEU ALA ILE GLN GLY LEU TYR GLY THR ASN GLN SEQRES 21 A 567 SER PHE HIS PRO PHE ILE HIS GLN CYS LYS PRO HIS PRO SEQRES 22 A 567 GLY GLN LEU TRP THR ALA ASP GLN MET PHE SER LEU LEU SEQRES 23 A 567 LYS ASP SER SER LEU VAL ARG GLU GLU LEU ASP GLY LYS SEQRES 24 A 567 HIS GLU TYR ARG GLY LYS ASP LEU ILE GLN ASP ARG TYR SEQRES 25 A 567 SER LEU ARG CYS LEU ALA GLN PHE ILE GLY PRO ILE VAL SEQRES 26 A 567 ASP GLY VAL SER GLU ILE THR LYS GLN ILE GLU VAL GLU SEQRES 27 A 567 MET ASN SER VAL THR ASP ASN PRO LEU ILE ASP VAL GLU SEQRES 28 A 567 ASN GLN VAL SER TYR HIS GLY GLY ASN PHE LEU GLY GLN SEQRES 29 A 567 TYR VAL GLY VAL THR MET ASP ARG LEU ARG TYR TYR ILE SEQRES 30 A 567 GLY LEU LEU ALA LYS HIS ILE ASP VAL GLN ILE ALA LEU SEQRES 31 A 567 LEU VAL SER PRO GLU PHE SER ASN GLY LEU PRO PRO SER SEQRES 32 A 567 LEU VAL GLY ASN SER ASP ARG LYS VAL ASN MET GLY LEU SEQRES 33 A 567 LYS GLY LEU GLN ILE SER GLY ASN SER ILE MET PRO LEU SEQRES 34 A 567 LEU SER PHE TYR GLY ASN SER LEU ALA ASP ARG PHE PRO SEQRES 35 A 567 THR HIS ALA GLU GLN PHE ASN GLN ASN ILE ASN SER GLN SEQRES 36 A 567 GLY TYR ILE SER ALA ASN LEU THR ARG ARG SER VAL ASP SEQRES 37 A 567 ILE PHE GLN ASN TYR MET ALA ILE ALA LEU MET PHE GLY SEQRES 38 A 567 VAL GLN ALA VAL ASP LEU ARG THR TYR LYS MET LYS GLY SEQRES 39 A 567 HIS TYR ASP ALA ARG THR CYS LEU SER PRO ASN THR VAL SEQRES 40 A 567 GLN LEU TYR THR ALA VAL CYS GLU VAL VAL GLY LYS PRO SEQRES 41 A 567 LEU THR SER VAL ARG PRO TYR ILE TRP ASN ASP ASN GLU SEQRES 42 A 567 GLN CYS LEU ASP GLU HIS ILE ALA ARG ILE SER ALA ASP SEQRES 43 A 567 ILE ALA GLY GLY GLY LEU ILE VAL GLN ALA VAL GLU HIS SEQRES 44 A 567 ILE PHE SER SER LEU LYS SER THR MODRES 2NYF MDO A 167 ALA MODRES 2NYF MDO A 167 SER MODRES 2NYF MDO A 167 GLY HET MDO A 167 13 HETNAM MDO {2-[(1S)-1-AMINOETHYL]-4-METHYLIDENE-5-OXO-4,5-DIHYDRO- HETNAM 2 MDO 1H-IMIDAZOL-1-YL}ACETIC ACID HETSYN MDO 4-METHYLIDENE-5-ONE; PEPTIDE DERIVED CHROMOPHORE FORMUL 1 MDO C8 H11 N3 O3 FORMUL 2 HOH *31(H2 O) HELIX 1 1 THR A 34 HIS A 44 1 11 HELIX 2 2 ASN A 53 ALA A 74 1 22 HELIX 3 3 SER A 93 LEU A 108 1 16 HELIX 4 4 SER A 117 LEU A 133 1 17 HELIX 5 5 ARG A 140 GLY A 154 1 15 HELIX 6 6 ASP A 170 ILE A 182 1 13 HELIX 7 7 ALA A 199 LEU A 206 1 8 HELIX 8 8 LYS A 216 ASN A 223 1 8 HELIX 9 9 THR A 225 LEU A 257 1 33 HELIX 10 10 ASN A 261 PHE A 264 5 4 HELIX 11 11 HIS A 265 GLN A 270 1 6 HELIX 12 12 HIS A 274 LEU A 288 1 15 HELIX 13 13 ARG A 313 CYS A 318 1 6 HELIX 14 14 CYS A 318 ASN A 342 1 25 HELIX 15 15 VAL A 352 GLN A 355 5 4 HELIX 16 16 GLY A 365 SER A 395 1 31 HELIX 17 17 PRO A 403 VAL A 407 5 5 HELIX 18 18 LEU A 418 GLY A 436 1 19 HELIX 19 19 LEU A 439 PHE A 443 5 5 HELIX 20 20 GLN A 457 GLY A 496 1 40 HELIX 21 21 ASP A 499 CYS A 503 5 5 HELIX 22 22 SER A 505 GLY A 520 1 16 HELIX 23 23 ASN A 532 GLN A 536 5 5 HELIX 24 24 CYS A 537 GLY A 552 1 16 HELIX 25 25 GLY A 553 ALA A 558 1 6 HELIX 26 26 VAL A 559 SER A 564 1 6 SHEET 1 A 2 ILE A 25 VAL A 28 0 SHEET 2 A 2 GLN A 47 LEU A 50 1 O GLN A 47 N VAL A 26 SHEET 1 B 2 ALA A 112 LYS A 115 0 SHEET 2 B 2 TYR A 160 PHE A 162 -1 O GLU A 161 N ASN A 114 SHEET 1 C 3 VAL A 155 PRO A 157 0 SHEET 2 C 3 THR A 189 PHE A 192 -1 O ASP A 191 N THR A 156 SHEET 3 C 3 LYS A 195 ASP A 198 -1 O MET A 197 N VAL A 190 SHEET 1 D 2 LEU A 349 ASP A 351 0 SHEET 2 D 2 VAL A 356 TYR A 358 -1 O VAL A 356 N ASP A 351 LINK C GLY A 166 N1 MDO A 167 1555 1555 1.33 LINK C3 MDO A 167 N ASP A 170 1555 1555 1.34 CISPEP 1 ASN A 347 PRO A 348 0 9.13 CRYST1 74.279 91.486 151.098 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013463 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010931 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006618 0.00000