HEADER OXIDOREDUCTASE 24-NOV-06 2NZL TITLE CRYSTAL STRUCTURE OF HUMAN HYDROXYACID OXIDASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYACID OXIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAOX1, GLYCOLATE OXIDASE, GOX; COMPND 5 EC: 1.1.3.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HAO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS HAOX1, GLYCOLATE OXIDASE, GOX, GOX1, HYDROXYACID OXIDASE 1, (S)-2- KEYWDS 2 HYDROXY-ACID OXIDASE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,K.KAVANAGH,E.PILKA,G.BERRIDGE,J.E.DEBRECZENI, AUTHOR 2 E.PAPAGRIGORIOU,A.TURNBULL,F.NIESEN,O.GILEADI,F.VON DELFT, AUTHOR 3 M.SUNDSTROM,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,U.OPPERMANN, AUTHOR 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 30-AUG-23 2NZL 1 REMARK SEQADV HETSYN REVDAT 5 31-JAN-18 2NZL 1 AUTHOR JRNL REVDAT 4 18-OCT-17 2NZL 1 REMARK REVDAT 3 13-JUL-11 2NZL 1 VERSN REVDAT 2 24-FEB-09 2NZL 1 VERSN REVDAT 1 12-DEC-06 2NZL 0 JRNL AUTH E.UGOCHUKWU,K.KAVANAGH,E.PILKA,G.BERRIDGE,J.E.DEBRECZENI, JRNL AUTH 2 E.PAPAGRIGORIOU,A.TURNBULL,F.NIESEN,O.GILEADI,F.VON DELFT, JRNL AUTH 3 M.SUNDSTROM,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF HUMAN HYDROXYACID OXIDASE 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.126 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.126 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 4059 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 77224 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.117 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.117 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 3393 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 63558 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2569 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 2760.5 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 2568.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.032 REMARK 3 ANGLE DISTANCES (A) : 0.033 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.381 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.058 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.062 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.028 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TWINNED STRUCTURE REFINED WITH SHELXL REMARK 3 -97 REMARK 4 REMARK 4 2NZL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8983 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81283 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 26.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1GOX, 1LTD, 1TB3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MMT, 30.0% PEG 1K, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.64700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.64700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.93500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.64700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.64700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.93500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 48.64700 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 48.64700 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 39.93500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 48.64700 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 48.64700 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.93500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 711 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 PRO A 3 REMARK 465 GLU A 187 REMARK 465 THR A 188 REMARK 465 SER A 189 REMARK 465 THR A 190 REMARK 465 LEU A 191 REMARK 465 SER A 192 REMARK 465 PHE A 193 REMARK 465 SER A 194 REMARK 465 PRO A 195 REMARK 465 GLU A 196 REMARK 465 GLU A 197 REMARK 465 ASN A 198 REMARK 465 PHE A 199 REMARK 465 GLY A 200 REMARK 465 ASP A 201 REMARK 465 ASP A 202 REMARK 465 SER A 203 REMARK 465 ARG A 227 REMARK 465 LEU A 228 REMARK 465 LYS A 362 REMARK 465 ASN A 363 REMARK 465 PRO A 364 REMARK 465 LEU A 365 REMARK 465 ALA A 366 REMARK 465 VAL A 367 REMARK 465 SER A 368 REMARK 465 LYS A 369 REMARK 465 ILE A 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CD NE CZ NH1 NH2 REMARK 470 ARG A 70 CD NE CZ NH1 NH2 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 149 CD CE NZ REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 180 CD OE1 NE2 REMARK 470 LYS A 211 CD CE NZ REMARK 470 LYS A 223 CD CE NZ REMARK 470 ARG A 245 NE CZ NH1 NH2 REMARK 470 LYS A 249 CE NZ REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 LYS A 327 CD CE NZ REMARK 470 ARG A 341 NE CZ NH1 NH2 REMARK 470 GLN A 350 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 35 CD GLU A 35 OE1 0.779 REMARK 500 GLU A 35 CD GLU A 35 OE2 0.763 REMARK 500 GLU A 59 CD GLU A 59 OE1 0.771 REMARK 500 GLU A 59 CD GLU A 59 OE2 0.777 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 35 OE1 - CD - OE2 ANGL. DEV. = -57.0 DEGREES REMARK 500 GLU A 35 CG - CD - OE1 ANGL. DEV. = -19.6 DEGREES REMARK 500 GLU A 35 CG - CD - OE2 ANGL. DEV. = -19.1 DEGREES REMARK 500 ARG A 52 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 GLU A 59 OE1 - CD - OE2 ANGL. DEV. = -58.1 DEGREES REMARK 500 GLU A 59 CG - CD - OE1 ANGL. DEV. = -19.6 DEGREES REMARK 500 GLU A 59 CG - CD - OE2 ANGL. DEV. = -19.0 DEGREES REMARK 500 ARG A 96 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 96 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 GLU A 117 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 TYR A 152 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 167 CG - CD - NE ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 167 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 240 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 361 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 361 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 361 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 32 -126.19 53.28 REMARK 500 TYR A 50 79.32 -119.29 REMARK 500 ASN A 56 94.65 66.33 REMARK 500 PRO A 74 45.23 -80.43 REMARK 500 TRP A 110 30.63 -95.51 REMARK 500 GLN A 264 -98.75 -109.62 REMARK 500 GLN A 324 41.46 -163.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 35 0.43 SIDE CHAIN REMARK 500 GLU A 59 0.43 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLV A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GOX RELATED DB: PDB REMARK 900 REFINED STRUCTURE OF SPINACH GLYCOLATE OXIDASE AT 2 ANGSTROMS REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1LTD RELATED DB: PDB REMARK 900 THE 2.6 ANGSTROMS REFINED STRUCTURE OF THE ESCHERICHIA COLI REMARK 900 RECOMBINANT SACCHAROMYCES CEREVISIAE FLAVOCYTOCHROME B2-SULPHITE REMARK 900 COMPLEX REMARK 900 RELATED ID: 1TB3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF RECOMBINANT RAT KIDNEY LONG-CHAIN REMARK 900 HYDROXY ACID OXIDASE DBREF 2NZL A 1 370 UNP Q9UJM8 HAOX1_HUMAN 1 370 SEQADV 2NZL MET A -21 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL HIS A -20 UNP Q9UJM8 EXPRESSION TAG SEQADV 2NZL HIS A -19 UNP Q9UJM8 EXPRESSION TAG SEQADV 2NZL HIS A -18 UNP Q9UJM8 EXPRESSION TAG SEQADV 2NZL HIS A -17 UNP Q9UJM8 EXPRESSION TAG SEQADV 2NZL HIS A -16 UNP Q9UJM8 EXPRESSION TAG SEQADV 2NZL HIS A -15 UNP Q9UJM8 EXPRESSION TAG SEQADV 2NZL SER A -14 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL SER A -13 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL GLY A -12 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL VAL A -11 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL ASP A -10 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL LEU A -9 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL GLY A -8 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL THR A -7 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL GLU A -6 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL ASN A -5 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL LEU A -4 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL TYR A -3 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL PHE A -2 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL GLN A -1 UNP Q9UJM8 CLONING ARTIFACT SEQADV 2NZL SER A 0 UNP Q9UJM8 CLONING ARTIFACT SEQRES 1 A 392 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 392 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU PRO ARG SEQRES 3 A 392 LEU ILE CYS ILE ASN ASP TYR GLU GLN HIS ALA LYS SER SEQRES 4 A 392 VAL LEU PRO LYS SER ILE TYR ASP TYR TYR ARG SER GLY SEQRES 5 A 392 ALA ASN ASP GLU GLU THR LEU ALA ASP ASN ILE ALA ALA SEQRES 6 A 392 PHE SER ARG TRP LYS LEU TYR PRO ARG MET LEU ARG ASN SEQRES 7 A 392 VAL ALA GLU THR ASP LEU SER THR SER VAL LEU GLY GLN SEQRES 8 A 392 ARG VAL SER MET PRO ILE CYS VAL GLY ALA THR ALA MET SEQRES 9 A 392 GLN ARG MET ALA HIS VAL ASP GLY GLU LEU ALA THR VAL SEQRES 10 A 392 ARG ALA CYS GLN SER LEU GLY THR GLY MET MET LEU SER SEQRES 11 A 392 SER TRP ALA THR SER SER ILE GLU GLU VAL ALA GLU ALA SEQRES 12 A 392 GLY PRO GLU ALA LEU ARG TRP LEU GLN LEU TYR ILE TYR SEQRES 13 A 392 LYS ASP ARG GLU VAL THR LYS LYS LEU VAL ARG GLN ALA SEQRES 14 A 392 GLU LYS MET GLY TYR LYS ALA ILE PHE VAL THR VAL ASP SEQRES 15 A 392 THR PRO TYR LEU GLY ASN ARG LEU ASP ASP VAL ARG ASN SEQRES 16 A 392 ARG PHE LYS LEU PRO PRO GLN LEU ARG MET LYS ASN PHE SEQRES 17 A 392 GLU THR SER THR LEU SER PHE SER PRO GLU GLU ASN PHE SEQRES 18 A 392 GLY ASP ASP SER GLY LEU ALA ALA TYR VAL ALA LYS ALA SEQRES 19 A 392 ILE ASP PRO SER ILE SER TRP GLU ASP ILE LYS TRP LEU SEQRES 20 A 392 ARG ARG LEU THR SER LEU PRO ILE VAL ALA LYS GLY ILE SEQRES 21 A 392 LEU ARG GLY ASP ASP ALA ARG GLU ALA VAL LYS HIS GLY SEQRES 22 A 392 LEU ASN GLY ILE LEU VAL SER ASN HIS GLY ALA ARG GLN SEQRES 23 A 392 LEU ASP GLY VAL PRO ALA THR ILE ASP VAL LEU PRO GLU SEQRES 24 A 392 ILE VAL GLU ALA VAL GLU GLY LYS VAL GLU VAL PHE LEU SEQRES 25 A 392 ASP GLY GLY VAL ARG LYS GLY THR ASP VAL LEU LYS ALA SEQRES 26 A 392 LEU ALA LEU GLY ALA LYS ALA VAL PHE VAL GLY ARG PRO SEQRES 27 A 392 ILE VAL TRP GLY LEU ALA PHE GLN GLY GLU LYS GLY VAL SEQRES 28 A 392 GLN ASP VAL LEU GLU ILE LEU LYS GLU GLU PHE ARG LEU SEQRES 29 A 392 ALA MET ALA LEU SER GLY CYS GLN ASN VAL LYS VAL ILE SEQRES 30 A 392 ASP LYS THR LEU VAL ARG LYS ASN PRO LEU ALA VAL SER SEQRES 31 A 392 LYS ILE HET FMN A 501 31 HET GLV A 601 5 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM GLV GLYOXYLIC ACID HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GLV GLYOXALATE; GLYOXYLATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 GLV C2 H2 O3 FORMUL 4 HOH *156(H2 O) HELIX 1 1 CYS A 7 LEU A 19 1 13 HELIX 2 2 PRO A 20 SER A 29 1 10 HELIX 3 3 GLU A 34 TRP A 47 1 14 HELIX 4 4 MET A 82 ALA A 86 5 5 HELIX 5 5 ASP A 89 GLY A 102 1 14 HELIX 6 6 SER A 114 GLY A 122 1 9 HELIX 7 7 ASP A 136 MET A 150 1 15 HELIX 8 8 ARG A 167 ARG A 174 1 8 HELIX 9 9 GLY A 204 ILE A 213 1 10 HELIX 10 10 SER A 218 ARG A 226 1 9 HELIX 11 11 ARG A 240 HIS A 250 1 11 HELIX 12 12 ASN A 259 ARG A 263 5 5 HELIX 13 13 ALA A 270 GLU A 283 1 14 HELIX 14 14 LYS A 296 LEU A 306 1 11 HELIX 15 15 GLY A 314 SER A 347 1 34 HELIX 16 16 ASN A 351 ILE A 355 5 5 HELIX 17 17 ASP A 356 THR A 358 5 3 SHEET 1 A 2 LYS A 48 LEU A 49 0 SHEET 2 A 2 VAL A 360 ARG A 361 -1 O ARG A 361 N LYS A 48 SHEET 1 B 2 THR A 64 VAL A 66 0 SHEET 2 B 2 GLN A 69 VAL A 71 -1 O GLN A 69 N VAL A 66 SHEET 1 C 9 ILE A 75 VAL A 77 0 SHEET 2 C 9 GLY A 104 LEU A 107 1 O GLY A 104 N VAL A 77 SHEET 3 C 9 LEU A 126 LEU A 131 1 O TRP A 128 N LEU A 107 SHEET 4 C 9 ILE A 155 THR A 158 1 O PHE A 156 N LEU A 131 SHEET 5 C 9 ILE A 233 ILE A 238 1 O LYS A 236 N VAL A 157 SHEET 6 C 9 GLY A 254 VAL A 257 1 O LEU A 256 N ALA A 235 SHEET 7 C 9 GLU A 287 LEU A 290 1 O PHE A 289 N ILE A 255 SHEET 8 C 9 ALA A 310 VAL A 313 1 O PHE A 312 N LEU A 290 SHEET 9 C 9 ILE A 75 VAL A 77 1 N CYS A 76 O VAL A 311 SITE 1 AC1 23 TYR A 27 ALA A 79 THR A 80 ALA A 81 SITE 2 AC1 23 SER A 108 GLN A 130 TYR A 132 THR A 158 SITE 3 AC1 23 LYS A 236 SER A 258 HIS A 260 GLY A 261 SITE 4 AC1 23 ARG A 263 ASP A 291 GLY A 292 GLY A 293 SITE 5 AC1 23 ARG A 295 GLY A 314 ARG A 315 GLV A 601 SITE 6 AC1 23 HOH A 606 HOH A 612 HOH A 625 SITE 1 AC2 7 TYR A 26 TRP A 110 TYR A 132 ARG A 167 SITE 2 AC2 7 HIS A 260 ARG A 263 FMN A 501 CRYST1 97.294 97.294 79.870 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012520 0.00000