HEADER    TRANSLATION                             27-NOV-06   2O0F              
TITLE     DOCKING OF THE MODIFIED RF3 X-RAY STRUCTURE INTO CRYO-EM MAP OF E.COLI
TITLE    2 70S RIBOSOME BOUND WITH RF3                                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PEPTIDE CHAIN RELEASE FACTOR 3;                            
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: RF-3;                                                       
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;                               
SOURCE   3 ORGANISM_TAXID: 562;                                                 
SOURCE   4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   5 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    RF3, RIBOSOME, CRYO-EM, TRANSLATION                                   
EXPDTA    ELECTRON MICROSCOPY                                                   
MDLTYP    CA ATOMS ONLY, CHAIN A                                                
AUTHOR    H.GAO,Z.ZHOU,U.RAWAT,C.HUANG,L.BOUAKAZ,C.WANG,Y.LIU,A.ZAVIALOV,       
AUTHOR   2 R.GURSKY,S.SANYAL,M.EHRENBERG,J.FRANK,H.SONG                         
REVDAT   5   27-DEC-23 2O0F    1       REMARK                                   
REVDAT   4   18-JUL-18 2O0F    1       REMARK                                   
REVDAT   3   02-FEB-10 2O0F    1       REMARK                                   
REVDAT   2   24-FEB-09 2O0F    1       VERSN                                    
REVDAT   1   24-JUL-07 2O0F    0                                                
JRNL        AUTH   H.GAO,Z.ZHOU,U.RAWAT,C.HUANG,L.BOUAKAZ,C.WANG,Z.CHENG,Y.LIU, 
JRNL        AUTH 2 A.ZAVIALOV,R.GURSKY,S.SANYAL,M.EHRENBERG,J.FRANK,H.SONG      
JRNL        TITL   RF3 INDUCES RIBOSOMAL CONFORMATIONAL CHANGES RESPONSIBLE FOR 
JRNL        TITL 2 DISSOCIATION OF CLASS I RELEASE FACTORS                      
JRNL        REF    CELL(CAMBRIDGE,MASS.)         V. 129   929 2007              
JRNL        REFN                   ISSN 0092-8674                               
JRNL        PMID   17540173                                                     
JRNL        DOI    10.1016/J.CELL.2007.03.050                                   
REMARK   2                                                                      
REMARK   2 RESOLUTION.   15.50 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   SOFTWARE PACKAGES      : RSREF, RSREF, SPIDER                      
REMARK   3   RECONSTRUCTION SCHEMA  : NULL                                      
REMARK   3                                                                      
REMARK   3 EM MAP-MODEL FITTING AND REFINEMENT                                  
REMARK   3   PDB ENTRY                    : 2H5E                                
REMARK   3   REFINEMENT SPACE             : REAL                                
REMARK   3   REFINEMENT PROTOCOL          : RIGID BODY FIT                      
REMARK   3   REFINEMENT TARGET            : CROSS-CORRELATION COEFFICIENT       
REMARK   3   OVERALL ANISOTROPIC B VALUE  : NULL                                
REMARK   3                                                                      
REMARK   3 FITTING PROCEDURE : METHOD--AUTO REFINEMENT PROTOCOL--MULTI-RIGID    
REMARK   3  BODY, REAL-SPACE REFINEMENT                                         
REMARK   3                                                                      
REMARK   3 EM IMAGE RECONSTRUCTION STATISTICS                                   
REMARK   3   NOMINAL PIXEL SIZE (ANGSTROMS)    : 2.800                          
REMARK   3   ACTUAL PIXEL SIZE  (ANGSTROMS)    : NULL                           
REMARK   3   EFFECTIVE RESOLUTION (ANGSTROMS)  : 15.50                          
REMARK   3   NUMBER OF PARTICLES               : 45000                          
REMARK   3   CTF CORRECTION METHOD             : NULL                           
REMARK   3                                                                      
REMARK   3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: TMV                     
REMARK   3                                                                      
REMARK   3 OTHER DETAILS: SPIDER PACKAGE, 0.5 CUTOFF OF FSC, THIS ENTRY         
REMARK   3  CONTAINS CA ATOMS ONLY                                              
REMARK   4                                                                      
REMARK   4 2O0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000040529.                                   
REMARK 245                                                                      
REMARK 245 EXPERIMENTAL DETAILS                                                 
REMARK 245   RECONSTRUCTION METHOD          : SINGLE PARTICLE                   
REMARK 245   SPECIMEN TYPE                  : VITREOUS ICE (CRYO EM)            
REMARK 245                                                                      
REMARK 245 ELECTRON MICROSCOPE SAMPLE                                           
REMARK 245   SAMPLE TYPE                    : PARTICLE                          
REMARK 245   PARTICLE TYPE                  : POINT                             
REMARK 245   NAME OF SAMPLE                 : RIBOSOMAL RELEASE COMPLEX BOUND   
REMARK 245                                    WITH RF3                          
REMARK 245   SAMPLE CONCENTRATION (MG ML-1) : 0.08                              
REMARK 245   SAMPLE SUPPORT DETAILS         : QUANTI-FOIL GRIDS COATED WITH A   
REMARK 245                                    THIN CARBON LAYER                 
REMARK 245   SAMPLE VITRIFICATION DETAILS   : RAPID-FREEZING IN LIQUID ETHANE   
REMARK 245   SAMPLE BUFFER                  : POLYMIX BUFFER                    
REMARK 245   PH                             : 7.50                              
REMARK 245   SAMPLE DETAILS                 : NULL                              
REMARK 245                                                                      
REMARK 245 DATA ACQUISITION                                                     
REMARK 245   DATE OF EXPERIMENT                : 01-JAN-02                      
REMARK 245   NUMBER OF MICROGRAPHS-IMAGES      : NULL                           
REMARK 245   TEMPERATURE (KELVIN)              : 93.00                          
REMARK 245   MICROSCOPE MODEL                  : FEI TECNAI F20                 
REMARK 245   DETECTOR TYPE                     : KODAK SO-163 FILM              
REMARK 245   MINIMUM DEFOCUS (NM)              : 2000.00                        
REMARK 245   MAXIMUM DEFOCUS (NM)              : 4000.00                        
REMARK 245   MINIMUM TILT ANGLE (DEGREES)      : 0.00                           
REMARK 245   MAXIMUM TILT ANGLE (DEGREES)      : 0.00                           
REMARK 245   NOMINAL CS                        : 2.00                           
REMARK 245   IMAGING MODE                      : BRIGHT FIELD                   
REMARK 245   ELECTRON DOSE (ELECTRONS NM**-2)  : 2000.00                        
REMARK 245   ILLUMINATION MODE                 : FLOOD BEAM                     
REMARK 245   NOMINAL MAGNIFICATION             : 50000                          
REMARK 245   CALIBRATED MAGNIFICATION          : 49696                          
REMARK 245   SOURCE                            : FIELD EMISSION GUN             
REMARK 245   ACCELERATION VOLTAGE (KV)         : 200                            
REMARK 245   IMAGING DETAILS                   : NULL                           
REMARK 247                                                                      
REMARK 247 ELECTRON MICROSCOPY                                                  
REMARK 247  THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON          
REMARK 247  MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE              
REMARK 247  THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES           
REMARK 247  ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION         
REMARK 247  OF THE STRUCTURE FACTORS.                                           
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     THR A     2                                                      
REMARK 465     ALA A    39                                                      
REMARK 465     ILE A    40                                                      
REMARK 465     GLN A    41                                                      
REMARK 465     THR A    42                                                      
REMARK 465     ALA A    43                                                      
REMARK 465     GLY A    44                                                      
REMARK 465     THR A    45                                                      
REMARK 465     VAL A    46                                                      
REMARK 465     LYS A    47                                                      
REMARK 465     GLY A    48                                                      
REMARK 465     ARG A    49                                                      
REMARK 465     GLY A    50                                                      
REMARK 465     SER A    51                                                      
REMARK 465     ASN A    52                                                      
REMARK 465     GLN A    53                                                      
REMARK 465     HIS A    54                                                      
REMARK 465     ALA A    55                                                      
REMARK 465     LYS A    56                                                      
REMARK 465     SER A    57                                                      
REMARK 465     ASP A    58                                                      
REMARK 465     TRP A    59                                                      
REMARK 465     MET A    60                                                      
REMARK 465     GLU A    61                                                      
REMARK 465     MET A    62                                                      
REMARK 465     GLU A    63                                                      
REMARK 465     LYS A    64                                                      
REMARK 465     GLN A    65                                                      
REMARK 465     ARG A    66                                                      
REMARK 465     GLY A    67                                                      
REMARK 465     ILE A    68                                                      
REMARK 465     SER A    69                                                      
REMARK 465     GLY A   351                                                      
REMARK 465     ASP A   352                                                      
REMARK 465     ARG A   353                                                      
REMARK 465     SER A   354                                                      
REMARK 465     HIS A   355                                                      
REMARK 465     LEU A   407                                                      
REMARK 465     LYS A   408                                                      
REMARK 465     GLN A   409                                                      
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2H5E   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF E.COLI POLYPEPTIDE RELEASE FACTOR RF3           
REMARK 900 RELATED ID: EMD-1302   RELATED DB: EMDB                              
DBREF  2O0F A    1   529  UNP    Q0T8T9   Q0T8T9_ECOL5    10    538             
SEQRES   1 A  529  MET THR LEU SER PRO TYR LEU GLN GLU VAL ALA LYS ARG          
SEQRES   2 A  529  ARG THR PHE ALA ILE ILE SER HIS PRO ASP ALA GLY LYS          
SEQRES   3 A  529  THR THR ILE THR GLU LYS VAL LEU LEU PHE GLY GLN ALA          
SEQRES   4 A  529  ILE GLN THR ALA GLY THR VAL LYS GLY ARG GLY SER ASN          
SEQRES   5 A  529  GLN HIS ALA LYS SER ASP TRP MET GLU MET GLU LYS GLN          
SEQRES   6 A  529  ARG GLY ILE SER ILE THR THR SER VAL MET GLN PHE PRO          
SEQRES   7 A  529  TYR HIS ASP CYS LEU VAL ASN LEU LEU ASP THR PRO GLY          
SEQRES   8 A  529  HIS GLU ASP PHE SER GLU ASP THR TYR ARG THR LEU THR          
SEQRES   9 A  529  ALA VAL ASP CYS CYS LEU MET VAL ILE ASP ALA ALA LYS          
SEQRES  10 A  529  GLY VAL GLU ASP ARG THR ARG LYS LEU MET GLU VAL THR          
SEQRES  11 A  529  ARG LEU ARG ASP THR PRO ILE LEU THR PHE MET ASN LYS          
SEQRES  12 A  529  LEU ASP ARG ASP ILE ARG ASP PRO MET GLU LEU LEU ASP          
SEQRES  13 A  529  GLU VAL GLU ASN GLU LEU LYS ILE GLY CYS ALA PRO ILE          
SEQRES  14 A  529  THR TRP PRO ILE GLY CYS GLY LYS LEU PHE LYS GLY VAL          
SEQRES  15 A  529  TYR HIS LEU TYR LYS ASP GLU THR TYR LEU TYR GLN SER          
SEQRES  16 A  529  GLY LYS GLY HIS THR ILE GLN GLU VAL ARG ILE VAL LYS          
SEQRES  17 A  529  GLY LEU ASN ASN PRO ASP LEU ASP ALA ALA VAL GLY GLU          
SEQRES  18 A  529  ASP LEU ALA GLN GLN LEU ARG ASP GLU LEU GLU LEU VAL          
SEQRES  19 A  529  LYS GLY ALA SER ASN GLU PHE ASP LYS GLU LEU PHE LEU          
SEQRES  20 A  529  ALA GLY GLU ILE THR PRO VAL PHE PHE GLY THR ALA LEU          
SEQRES  21 A  529  GLY ASN PHE GLY VAL ASP HIS MET LEU ASP GLY LEU VAL          
SEQRES  22 A  529  GLU TRP ALA PRO ALA PRO MET PRO ARG GLN THR ASP THR          
SEQRES  23 A  529  ARG THR VAL GLU ALA SER GLU ASP LYS PHE THR GLY PHE          
SEQRES  24 A  529  VAL PHE LYS ILE GLN ALA ASN MET ASP PRO LYS HIS ARG          
SEQRES  25 A  529  ASP ARG VAL ALA PHE MET ARG VAL VAL SER GLY LYS TYR          
SEQRES  26 A  529  GLU LYS GLY MET LYS LEU ARG GLN VAL ARG THR ALA LYS          
SEQRES  27 A  529  ASP VAL VAL ILE SER ASP ALA LEU THR PHE MET ALA GLY          
SEQRES  28 A  529  ASP ARG SER HIS VAL GLU GLU ALA TYR PRO GLY ASP ILE          
SEQRES  29 A  529  LEU GLY LEU HIS ASN HIS GLY THR ILE GLN ILE GLY ASP          
SEQRES  30 A  529  THR PHE THR GLN GLY GLU MET MET LYS PHE THR GLY ILE          
SEQRES  31 A  529  PRO ASN PHE ALA PRO GLU LEU PHE ARG ARG ILE ARG LEU          
SEQRES  32 A  529  LYS ASP PRO LEU LYS GLN LYS GLN LEU LEU LYS GLY LEU          
SEQRES  33 A  529  VAL GLN LEU SER GLU GLU GLY ALA VAL GLN VAL PHE ARG          
SEQRES  34 A  529  PRO ILE SER ASN ASN ASP LEU ILE VAL GLY ALA VAL GLY          
SEQRES  35 A  529  VAL LEU GLN PHE ASP VAL VAL VAL ALA ARG LEU LYS SER          
SEQRES  36 A  529  GLU TYR ASN VAL GLU ALA VAL TYR GLU SER VAL ASN VAL          
SEQRES  37 A  529  ALA THR ALA ARG TRP VAL GLU CYS ALA ASP ALA LYS LYS          
SEQRES  38 A  529  PHE GLU GLU PHE LYS ARG LYS ASN GLU SER GLN LEU ALA          
SEQRES  39 A  529  LEU ASP GLY GLY ASP ASN LEU ALA TYR ILE ALA THR SER          
SEQRES  40 A  529  MET VAL ASN LEU ARG LEU ALA GLN GLU ARG TYR PRO ASP          
SEQRES  41 A  529  VAL GLN PHE HIS GLN THR ARG GLU HIS                          
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000