HEADER LYASE 28-NOV-06 2O0W TITLE PECTATE LYASE BOUND TO HEXASACCHARIDE COMPOUND IV COMPND MOL_ID: 1; COMPND 2 MOLECULE: PECTATE LYASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PL; COMPND 5 EC: 4.2.2.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: PEL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS MICHAELIS COMPLEX WITH COMPOUND IV, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.W.PICKERSGILL,A.SEYEDARABI REVDAT 5 27-DEC-23 2O0W 1 REMARK REVDAT 4 20-OCT-21 2O0W 1 REMARK SEQADV LINK REVDAT 3 24-JUN-15 2O0W 1 VERSN REMARK REVDAT 2 24-FEB-09 2O0W 1 VERSN REVDAT 1 20-NOV-07 2O0W 0 JRNL AUTH A.SEYEDARABI,S.HUSSAIN,M.FRIES,A.MACDOUGHALL,N.CUMMINGS, JRNL AUTH 2 D.SMITH,K.WORBOYS,K.BROCKLEHURST,R.W.PICKERSGILL JRNL TITL STRUCTURAL AND THERMODYNAMIC INSIGHTS INTO THE MECHANISM OF JRNL TITL 2 PECTATE LYASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1516 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1630 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3060 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 638 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.729 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3139 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4254 ; 1.149 ; 1.923 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 5.969 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;39.700 ;25.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;12.112 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;10.301 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 451 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2446 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1571 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2099 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 521 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.187 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 54 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2023 ; 0.561 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3160 ; 0.884 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 1.393 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1094 ; 2.098 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O0W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41253 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.12700 REMARK 200 R SYM FOR SHELL (I) : 0.12700 REMARK 200 FOR SHELL : 7.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.6, 0.2M REMARK 280 AMMONIUM ACETATE, 30% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.47800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 184 OD2 ASP A 227 1.94 REMARK 500 CG ASP A 184 OD2 ASP A 227 2.05 REMARK 500 NE2 GLN A 114 O HOH A 1008 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 223 OD1 - CG - OD2 ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP A 223 CB - CG - OD2 ANGL. DEV. = 14.8 DEGREES REMARK 500 ASP A 227 OD1 - CG - OD2 ANGL. DEV. = -18.5 DEGREES REMARK 500 ASP A 227 CB - CG - OD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP A 227 CB - CG - OD2 ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 18 -112.44 47.93 REMARK 500 ASN A 151 71.46 77.11 REMARK 500 HIS A 193 72.55 53.06 REMARK 500 ASP A 223 -123.88 -113.31 REMARK 500 GLN A 225 -64.47 -104.88 REMARK 500 TYR A 234 72.78 66.03 REMARK 500 ASP A 246 -79.82 -80.22 REMARK 500 LYS A 263 -158.98 -117.79 REMARK 500 ALA A 279 69.19 60.50 REMARK 500 PHE A 285 -39.69 72.52 REMARK 500 ALA A 309 -65.13 -93.15 REMARK 500 LEU A 398 -92.71 -108.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 173 OD2 REMARK 620 2 ASN A 180 OD1 83.4 REMARK 620 3 HOH A 555 O 78.8 75.2 REMARK 620 4 HOH A 556 O 85.5 103.4 164.3 REMARK 620 5 HOH A 852 O 81.1 153.0 80.1 97.3 REMARK 620 6 HOH A 880 O 136.5 133.8 125.6 66.8 70.6 REMARK 620 7 HOH A 905 O 150.6 70.3 81.9 112.6 117.2 72.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 184 OD1 REMARK 620 2 ASP A 184 OD2 54.7 REMARK 620 3 ASP A 223 OD2 82.7 121.1 REMARK 620 4 ASP A 223 OD1 78.1 132.8 42.8 REMARK 620 5 ASP A 227 OD1 92.1 86.6 138.6 95.8 REMARK 620 6 ASP A 227 OD2 58.3 49.0 138.0 108.2 41.2 REMARK 620 7 HOH A 451 O 129.6 75.1 125.3 151.7 89.2 93.8 REMARK 620 8 HOH A 828 O 90.8 81.2 58.7 101.4 162.8 129.8 75.9 REMARK 620 9 HOH A 844 O 157.8 147.5 80.3 79.7 91.4 131.6 72.4 92.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 223 OD1 REMARK 620 2 ASP A 223 OD2 50.7 REMARK 620 3 HOH A 495 O 50.5 91.6 REMARK 620 4 HOH A 518 O 101.8 61.5 151.6 REMARK 620 5 HOH A 652 O 97.2 102.9 119.8 63.3 REMARK 620 6 HOH A 844 O 101.3 79.2 82.7 99.5 157.1 REMARK 620 7 HOH A 868 O 100.8 151.2 67.2 133.5 73.9 115.0 REMARK 620 8 HOH A 964 O 164.6 135.7 114.5 92.4 94.4 70.2 72.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BN8 RELATED DB: PDB REMARK 900 PECTATE LYASE WITH ONE CALCIUM REMARK 900 RELATED ID: 2NZM RELATED DB: PDB REMARK 900 PECTATE LYASE IN COMPLEX WITH HEXASACCHARIDE I (THREE CALCIUMS) REMARK 900 RELATED ID: 2O04 RELATED DB: PDB REMARK 900 PECTATE LYASE IN COMPLEX WITH HEXASACCHARIDE II (THREE CALCIUMS) REMARK 900 RELATED ID: 2O0V RELATED DB: PDB REMARK 900 PECTATE LYASE IN COMPLEX WITH HEXASACCHARIDE III (THREE CALCIUMS) REMARK 900 RELATED ID: 2O17 RELATED DB: PDB REMARK 900 PECTATE LYASE IN COMPLEX WITH HEXASACCHARIDE (THREE CALCIUMS) REMARK 900 RELATED ID: 2O1D RELATED DB: PDB REMARK 900 PECTATE LYASE IN COMPLEX WITH TRISACCHARIDE (THREE CALCIUMS) DBREF 2O0W A 1 399 UNP P39116 PEL_BACSU 22 420 SEQADV 2O0W ALA A 279 UNP P39116 ARG 300 ENGINEERED MUTATION SEQRES 1 A 399 ALA ASP LEU GLY HIS GLN THR LEU GLY SER ASN ASP GLY SEQRES 2 A 399 TRP GLY ALA TYR SER THR GLY THR THR GLY GLY SER LYS SEQRES 3 A 399 ALA SER SER SER ASN VAL TYR THR VAL SER ASN ARG ASN SEQRES 4 A 399 GLN LEU VAL SER ALA LEU GLY LYS GLU THR ASN THR THR SEQRES 5 A 399 PRO LYS ILE ILE TYR ILE LYS GLY THR ILE ASP MET ASN SEQRES 6 A 399 VAL ASP ASP ASN LEU LYS PRO LEU GLY LEU ASN ASP TYR SEQRES 7 A 399 LYS ASP PRO GLU TYR ASP LEU ASP LYS TYR LEU LYS ALA SEQRES 8 A 399 TYR ASP PRO SER THR TRP GLY LYS LYS GLU PRO SER GLY SEQRES 9 A 399 THR GLN GLU GLU ALA ARG ALA ARG SER GLN LYS ASN GLN SEQRES 10 A 399 LYS ALA ARG VAL MET VAL ASP ILE PRO ALA ASN THR THR SEQRES 11 A 399 ILE VAL GLY SER GLY THR ASN ALA LYS VAL VAL GLY GLY SEQRES 12 A 399 ASN PHE GLN ILE LYS SER ASP ASN VAL ILE ILE ARG ASN SEQRES 13 A 399 ILE GLU PHE GLN ASP ALA TYR ASP TYR PHE PRO GLN TRP SEQRES 14 A 399 ASP PRO THR ASP GLY SER SER GLY ASN TRP ASN SER GLN SEQRES 15 A 399 TYR ASP ASN ILE THR ILE ASN GLY GLY THR HIS ILE TRP SEQRES 16 A 399 ILE ASP HIS CYS THR PHE ASN ASP GLY SER ARG PRO ASP SEQRES 17 A 399 SER THR SER PRO LYS TYR TYR GLY ARG LYS TYR GLN HIS SEQRES 18 A 399 HIS ASP GLY GLN THR ASP ALA SER ASN GLY ALA ASN TYR SEQRES 19 A 399 ILE THR MET SER TYR ASN TYR TYR HIS ASP HIS ASP LYS SEQRES 20 A 399 SER SER ILE PHE GLY SER SER ASP SER LYS THR SER ASP SEQRES 21 A 399 ASP GLY LYS LEU LYS ILE THR LEU HIS HIS ASN ARG TYR SEQRES 22 A 399 LYS ASN ILE VAL GLN ALA ALA PRO ARG VAL ARG PHE GLY SEQRES 23 A 399 GLN VAL HIS VAL TYR ASN ASN TYR TYR GLU GLY SER THR SEQRES 24 A 399 SER SER SER SER TYR PRO PHE SER TYR ALA TRP GLY ILE SEQRES 25 A 399 GLY LYS SER SER LYS ILE TYR ALA GLN ASN ASN VAL ILE SEQRES 26 A 399 ASP VAL PRO GLY LEU SER ALA ALA LYS THR ILE SER VAL SEQRES 27 A 399 PHE SER GLY GLY THR ALA LEU TYR ASP SER GLY THR LEU SEQRES 28 A 399 LEU ASN GLY THR GLN ILE ASN ALA SER ALA ALA ASN GLY SEQRES 29 A 399 LEU SER SER SER VAL GLY TRP THR PRO SER LEU HIS GLY SEQRES 30 A 399 SER ILE ASP ALA SER ALA ASN VAL LYS SER ASN VAL ILE SEQRES 31 A 399 ASN GLN ALA GLY ALA GLY LYS LEU ASN HET CA A 400 1 HET CA A 401 1 HET CA A 402 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 HOH *638(H2 O) HELIX 1 1 GLY A 13 TYR A 17 5 5 HELIX 2 2 SER A 28 SER A 30 5 3 HELIX 3 3 ASN A 37 GLY A 46 1 10 HELIX 4 4 GLY A 74 LYS A 79 1 6 HELIX 5 5 ASP A 84 ASP A 93 1 10 HELIX 6 6 ASP A 93 GLY A 98 1 6 HELIX 7 7 GLY A 104 VAL A 121 1 18 HELIX 8 8 PRO A 207 SER A 211 5 5 HELIX 9 9 LYS A 257 ASP A 261 5 5 HELIX 10 10 ALA A 332 LYS A 334 5 3 HELIX 11 11 ASN A 358 ASN A 363 1 6 HELIX 12 12 ALA A 381 ALA A 393 1 13 SHEET 1 A10 VAL A 32 VAL A 35 0 SHEET 2 A10 LYS A 54 ILE A 58 1 O TYR A 57 N TYR A 33 SHEET 3 A10 THR A 129 GLY A 133 1 O THR A 130 N ILE A 56 SHEET 4 A10 ASP A 150 ARG A 155 1 O ILE A 153 N ILE A 131 SHEET 5 A10 THR A 192 ASP A 197 1 O TRP A 195 N ILE A 154 SHEET 6 A10 ASN A 233 SER A 238 1 O THR A 236 N ILE A 194 SHEET 7 A10 ILE A 266 HIS A 269 1 O THR A 267 N MET A 237 SHEET 8 A10 VAL A 288 TYR A 291 1 O HIS A 289 N LEU A 268 SHEET 9 A10 TYR A 319 GLN A 321 1 O TYR A 319 N VAL A 288 SHEET 10 A10 TYR A 346 SER A 348 1 O TYR A 346 N ALA A 320 SHEET 1 B10 THR A 61 ASP A 63 0 SHEET 2 B10 LYS A 139 VAL A 141 1 O LYS A 139 N ILE A 62 SHEET 3 B10 GLU A 158 GLN A 160 1 O GLN A 160 N VAL A 140 SHEET 4 B10 THR A 200 ASN A 202 1 O THR A 200 N PHE A 159 SHEET 5 B10 TYR A 241 LYS A 247 1 O TYR A 241 N PHE A 201 SHEET 6 B10 ARG A 272 GLN A 278 1 O ARG A 272 N TYR A 242 SHEET 7 B10 TYR A 294 GLU A 296 1 O GLU A 296 N TYR A 273 SHEET 8 B10 VAL A 324 ASP A 326 1 O ASP A 326 N TYR A 295 SHEET 9 B10 LEU A 351 LEU A 352 1 O LEU A 351 N ILE A 325 SHEET 10 B10 THR A 355 GLN A 356 -1 O THR A 355 N LEU A 352 SHEET 1 C 4 MET A 122 ASP A 124 0 SHEET 2 C 4 ASN A 144 ILE A 147 1 O GLN A 146 N VAL A 123 SHEET 3 C 4 ILE A 186 ASN A 189 1 O THR A 187 N PHE A 145 SHEET 4 C 4 THR A 226 SER A 229 1 O SER A 229 N ILE A 188 SHEET 1 D 2 GLN A 168 ASP A 170 0 SHEET 2 D 2 ASN A 178 ASN A 180 -1 O ASN A 180 N GLN A 168 SHEET 1 E 2 LYS A 213 TYR A 214 0 SHEET 2 E 2 ARG A 217 LYS A 218 -1 O ARG A 217 N TYR A 214 SHEET 1 F 4 ILE A 250 PHE A 251 0 SHEET 2 F 4 ARG A 282 VAL A 283 1 O ARG A 282 N PHE A 251 SHEET 3 F 4 TRP A 310 ILE A 312 1 O GLY A 311 N VAL A 283 SHEET 4 F 4 ILE A 336 VAL A 338 1 O SER A 337 N ILE A 312 LINK OD2 ASP A 173 CA CA A 401 1555 1555 2.55 LINK OD1 ASN A 180 CA CA A 401 1555 1555 2.55 LINK OD1 ASP A 184 CA CA A 400 1555 1555 2.31 LINK OD2 ASP A 184 CA CA A 400 1555 1555 2.40 LINK OD2 ASP A 223 CA CA A 400 1555 1555 2.29 LINK OD1 ASP A 223 CA CA A 400 1555 1555 3.04 LINK OD1 ASP A 223 CA CA A 402 1555 1555 2.34 LINK OD2 ASP A 223 CA CA A 402 1555 1555 2.49 LINK OD1 ASP A 227 CA CA A 400 1555 1555 2.89 LINK OD2 ASP A 227 CA CA A 400 1555 1555 2.25 LINK CA CA A 400 O HOH A 451 1555 1555 2.79 LINK CA CA A 400 O HOH A 828 1555 1555 2.81 LINK CA CA A 400 O HOH A 844 1555 1555 2.32 LINK CA CA A 401 O HOH A 555 1555 1555 2.47 LINK CA CA A 401 O HOH A 556 1555 1555 2.57 LINK CA CA A 401 O HOH A 852 1555 1555 2.60 LINK CA CA A 401 O HOH A 880 1555 1555 2.66 LINK CA CA A 401 O HOH A 905 1555 1555 2.26 LINK CA CA A 402 O HOH A 495 1555 1555 2.76 LINK CA CA A 402 O HOH A 518 1555 1555 2.56 LINK CA CA A 402 O HOH A 652 1555 1555 2.90 LINK CA CA A 402 O HOH A 844 1555 1555 2.16 LINK CA CA A 402 O HOH A 868 1555 1555 3.00 LINK CA CA A 402 O HOH A 964 1555 1555 2.23 CISPEP 1 ALA A 280 PRO A 281 0 0.00 SITE 1 AC1 7 ASP A 184 ASP A 223 ASP A 227 CA A 402 SITE 2 AC1 7 HOH A 451 HOH A 828 HOH A 844 SITE 1 AC2 7 ASP A 173 ASN A 180 HOH A 555 HOH A 556 SITE 2 AC2 7 HOH A 852 HOH A 880 HOH A 905 SITE 1 AC3 8 ASP A 223 CA A 400 HOH A 495 HOH A 518 SITE 2 AC3 8 HOH A 652 HOH A 844 HOH A 868 HOH A 964 CRYST1 50.725 68.956 59.482 90.00 112.70 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019714 0.000000 0.008247 0.00000 SCALE2 0.000000 0.014502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018223 0.00000