HEADER LYASE 28-NOV-06 2O12 TITLE MYCOBACTERIUM TUBERCULOSIS CHORISMATE SYNTHASE IN COMPLEX WITH FMN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHORISMATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PHOSPHOLYASE; COMPND 5 EC: 4.2.3.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: AROF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET24B KEYWDS SHIKIMATE PATHWAY, M. TUBERCULOSIS, CHORISMATE SYNTHASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.BRUNING,H.D.BARTUNIK REVDAT 6 27-DEC-23 2O12 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2O12 1 REMARK REVDAT 4 13-JUL-11 2O12 1 VERSN REVDAT 3 24-FEB-09 2O12 1 VERSN REVDAT 2 15-JUL-08 2O12 1 REMARK REVDAT 1 08-APR-08 2O12 0 JRNL AUTH M.BRUNING,G.P.BOURENKOV,N.I.STRIZHOV,H.D.BARTUNIK JRNL TITL COMPLEXES OF CHORISMATE SYNTHASE FROM M. TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 83603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4415 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6079 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 313 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2829 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 511 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.401 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3088 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2928 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4225 ; 1.317 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6748 ; 0.884 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.306 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;31.411 ;21.866 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 490 ;12.560 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;19.778 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 475 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3583 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 643 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 640 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3083 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1534 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1929 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 342 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.004 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.120 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 172 ; 0.244 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 47 ; 0.139 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1998 ; 3.082 ; 8.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 820 ; 0.919 ; 8.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3195 ; 4.433 ;12.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1141 ; 6.020 ;16.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1014 ; 8.393 ;24.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040552. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : AU-COATED PLANAR; TOROIDAL REMARK 200 MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88273 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.93200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.8 M NH4-ACETATE, 0.1 M NA-ACETATE, REMARK 280 PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.87300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.74600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.87300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 105.74600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.87300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 105.74600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.87300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 105.74600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 133.44500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 34870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -227.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 133.44500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 133.44500 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 843 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 882 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 47 REMARK 465 ALA A 48 REMARK 465 ARG A 49 REMARK 465 MET A 50 REMARK 465 THR A 51 REMARK 465 PHE A 52 REMARK 465 GLU A 393 REMARK 465 ALA A 394 REMARK 465 PRO A 395 REMARK 465 ALA A 396 REMARK 465 ALA A 397 REMARK 465 ARG A 398 REMARK 465 VAL A 399 REMARK 465 SER A 400 REMARK 465 GLY A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 613 O HOH A 920 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 128 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 286 41.66 -107.84 REMARK 500 ALA A 323 129.80 32.69 REMARK 500 ALA A 323 129.80 45.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 599 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 293 ND2 REMARK 620 2 HOH A 962 O 102.3 REMARK 620 3 HOH A 963 O 104.1 108.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 598 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 911 O REMARK 620 2 HOH A 998 O 125.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 594 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 595 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 596 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 597 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 598 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 599 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 593 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QXO RELATED DB: PDB REMARK 900 CHORISMATE SYNTHASE DBREF 2O12 A 1 401 UNP P63611 AROC_MYCTU 1 401 SEQADV 2O12 HIS A 402 UNP P63611 EXPRESSION TAG SEQADV 2O12 HIS A 403 UNP P63611 EXPRESSION TAG SEQADV 2O12 HIS A 404 UNP P63611 EXPRESSION TAG SEQADV 2O12 HIS A 405 UNP P63611 EXPRESSION TAG SEQADV 2O12 HIS A 406 UNP P63611 EXPRESSION TAG SEQADV 2O12 HIS A 407 UNP P63611 EXPRESSION TAG SEQRES 1 A 407 MET LEU ARG TRP ILE THR ALA GLY GLU SER HIS GLY ARG SEQRES 2 A 407 ALA LEU VAL ALA VAL VAL GLU GLY MET VAL ALA GLY VAL SEQRES 3 A 407 HIS VAL THR SER ALA ASP ILE ALA ASP GLN LEU ALA ARG SEQRES 4 A 407 ARG ARG LEU GLY TYR GLY ARG GLY ALA ARG MET THR PHE SEQRES 5 A 407 GLU ARG ASP ALA VAL THR VAL LEU SER GLY ILE ARG HIS SEQRES 6 A 407 GLY SER THR LEU GLY GLY PRO ILE ALA ILE GLU ILE GLY SEQRES 7 A 407 ASN THR GLU TRP PRO LYS TRP GLU THR VAL MET ALA ALA SEQRES 8 A 407 ASP PRO VAL ASP PRO ALA GLU LEU ALA ASP VAL ALA ARG SEQRES 9 A 407 ASN ALA PRO LEU THR ARG PRO ARG PRO GLY HIS ALA ASP SEQRES 10 A 407 TYR ALA GLY MET LEU LYS TYR GLY PHE ASP ASP ALA ARG SEQRES 11 A 407 PRO VAL LEU GLU ARG ALA SER ALA ARG GLU THR ALA ALA SEQRES 12 A 407 ARG VAL ALA ALA GLY THR VAL ALA ARG ALA PHE LEU ARG SEQRES 13 A 407 GLN ALA LEU GLY VAL GLU VAL LEU SER HIS VAL ILE SER SEQRES 14 A 407 ILE GLY ALA SER ALA PRO TYR GLU GLY PRO PRO PRO ARG SEQRES 15 A 407 ALA GLU ASP LEU PRO ALA ILE ASP ALA SER PRO VAL ARG SEQRES 16 A 407 ALA TYR ASP LYS ALA ALA GLU ALA ASP MET ILE ALA GLN SEQRES 17 A 407 ILE GLU ALA ALA LYS LYS ASP GLY ASP THR LEU GLY GLY SEQRES 18 A 407 VAL VAL GLU ALA VAL ALA LEU GLY LEU PRO VAL GLY LEU SEQRES 19 A 407 GLY SER PHE THR SER GLY ASP HIS ARG LEU ASP SER GLN SEQRES 20 A 407 LEU ALA ALA ALA VAL MET GLY ILE GLN ALA ILE LYS GLY SEQRES 21 A 407 VAL GLU ILE GLY ASP GLY PHE GLN THR ALA ARG ARG ARG SEQRES 22 A 407 GLY SER ARG ALA HIS ASP GLU MET TYR PRO GLY PRO ASP SEQRES 23 A 407 GLY VAL VAL ARG SER THR ASN ARG ALA GLY GLY LEU GLU SEQRES 24 A 407 GLY GLY MET THR ASN GLY GLN PRO LEU ARG VAL ARG ALA SEQRES 25 A 407 ALA MET LYS PRO ILE SER THR VAL PRO ARG ALA LEU ALA SEQRES 26 A 407 THR VAL ASP LEU ALA THR GLY ASP GLU ALA VAL ALA ILE SEQRES 27 A 407 HIS GLN ARG SER ASP VAL CYS ALA VAL PRO ALA ALA GLY SEQRES 28 A 407 VAL VAL VAL GLU THR MET VAL ALA LEU VAL LEU ALA ARG SEQRES 29 A 407 ALA ALA LEU GLU LYS PHE GLY GLY ASP SER LEU ALA GLU SEQRES 30 A 407 THR GLN ARG ASN ILE ALA ALA TYR GLN ARG SER VAL ALA SEQRES 31 A 407 ASP ARG GLU ALA PRO ALA ALA ARG VAL SER GLY HIS HIS SEQRES 32 A 407 HIS HIS HIS HIS HET ACT A 594 4 HET ACT A 595 4 HET ACT A 596 4 HET ACT A 597 4 HET NA A 598 1 HET NA A 599 1 HET FMN A 593 31 HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 ACT 4(C2 H3 O2 1-) FORMUL 6 NA 2(NA 1+) FORMUL 8 FMN C17 H21 N4 O9 P FORMUL 9 HOH *511(H2 O) HELIX 1 1 THR A 29 ARG A 41 1 13 HELIX 2 2 GLU A 53 ASP A 55 5 3 HELIX 3 3 GLU A 81 GLU A 86 1 6 HELIX 4 4 ASP A 95 ASP A 101 1 7 HELIX 5 5 VAL A 102 ALA A 106 5 5 HELIX 6 6 ALA A 116 GLY A 125 1 10 HELIX 7 7 ALA A 129 SER A 137 1 9 HELIX 8 8 ARG A 139 GLY A 160 1 22 HELIX 9 9 ARG A 182 GLU A 184 5 3 HELIX 10 10 ASP A 185 SER A 192 1 8 HELIX 11 11 ASP A 198 GLY A 216 1 19 HELIX 12 12 SER A 239 HIS A 242 5 4 HELIX 13 13 ARG A 243 GLY A 254 1 12 HELIX 14 14 ASP A 265 ALA A 270 1 6 HELIX 15 15 ARG A 271 ARG A 272 5 2 HELIX 16 16 ARG A 273 ALA A 277 5 5 HELIX 17 17 ALA A 346 GLY A 371 1 26 HELIX 18 18 SER A 374 ASP A 391 1 18 SHEET 1 A 4 ARG A 3 ALA A 7 0 SHEET 2 A 4 ALA A 14 GLU A 20 -1 O VAL A 16 N ALA A 7 SHEET 3 A 4 ILE A 73 GLY A 78 -1 O ILE A 73 N VAL A 19 SHEET 4 A 4 VAL A 57 SER A 61 -1 N THR A 58 O GLU A 76 SHEET 1 B 2 ILE A 63 ARG A 64 0 SHEET 2 B 2 SER A 67 THR A 68 -1 O SER A 67 N ARG A 64 SHEET 1 C 4 GLU A 162 ILE A 170 0 SHEET 2 C 4 GLY A 221 LEU A 228 -1 O GLU A 224 N HIS A 166 SHEET 3 C 4 LEU A 308 MET A 314 -1 O MET A 314 N GLY A 221 SHEET 4 C 4 ILE A 258 ILE A 263 -1 N LYS A 259 O ALA A 313 SHEET 1 D 2 MET A 281 TYR A 282 0 SHEET 2 D 2 VAL A 289 ARG A 290 -1 O VAL A 289 N TYR A 282 SHEET 1 E 2 LEU A 298 GLU A 299 0 SHEET 2 E 2 MET A 302 THR A 303 -1 O MET A 302 N GLU A 299 SHEET 1 F 2 ALA A 325 VAL A 327 0 SHEET 2 F 2 GLU A 334 VAL A 336 -1 O ALA A 335 N THR A 326 LINK ND2 ASN A 293 NA NA A 599 1555 1555 2.99 LINK NA NA A 598 O HOH A 911 1555 1555 2.85 LINK NA NA A 598 O CHOH A 998 1555 1555 2.76 LINK NA NA A 599 O HOH A 962 1555 1555 2.67 LINK NA NA A 599 O HOH A 963 1555 1555 2.77 SITE 1 AC1 9 TRP A 4 SER A 246 ALA A 250 ALA A 251 SITE 2 AC1 9 MET A 357 HOH A 629 HOH A 824 HOH A 903 SITE 3 AC1 9 HOH A 986 SITE 1 AC2 6 GLN A 36 THR A 149 ARG A 152 ARG A 156 SITE 2 AC2 6 HOH A 801 HOH A1060 SITE 1 AC3 5 HIS A 115 SER A 137 ALA A 138 HOH A1043 SITE 2 AC3 5 HOH A1106 SITE 1 AC4 6 ARG A 40 ARG A 46 ARG A 139 ARG A 341 SITE 2 AC4 6 HOH A 875 HOH A1030 SITE 1 AC5 4 LEU A 375 ALA A 376 HOH A 911 HOH A 998 SITE 1 AC6 3 ASN A 293 HOH A 962 HOH A 963 SITE 1 AC7 20 GLY A 114 HIS A 115 ALA A 136 ALA A 138 SITE 2 AC7 20 ARG A 243 GLN A 256 ALA A 257 GLU A 299 SITE 3 AC7 20 GLY A 300 MET A 314 LYS A 315 ILE A 317 SITE 4 AC7 20 SER A 318 THR A 319 ARG A 341 HOH A 626 SITE 5 AC7 20 HOH A 787 HOH A 827 HOH A 856 HOH A1053 CRYST1 133.445 133.445 158.619 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007494 0.004327 0.000000 0.00000 SCALE2 0.000000 0.008653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006304 0.00000