HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-NOV-06 2O1O TITLE CRYPTOSPORIDIUM PARVUM PUTATIVE POLYPRENYL PYROPHOSPHATE SYNTHASE TITLE 2 (CGD4_2550) IN COMPLEX WITH RISEDRONATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 38-384; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOSPORIDIUM PARVUM; SOURCE 3 ORGANISM_TAXID: 5807; SOURCE 4 GENE: CGD4_2550; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-(DE3)-CODONPLUS-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P28A-LIC KEYWDS PUTATIVE POLYPRENYL PYROPHOSPHATE SYNTHASE, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.CHRUSZCZ,J.D.ARTZ,A.DONG,J.DUNFORD,J.LEW,Y.ZHAO,I.KOZIERADSKI, AUTHOR 2 K.L.KAVANAUGH,U.OPPERMANN,M.SUNDSTROM,J.WEIGELT,A.M.EDWARDS, AUTHOR 3 C.H.ARROWSMITH,A.BOCHKAREV,R.HUI,W.MINOR,STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (SGC) REVDAT 5 30-AUG-23 2O1O 1 REMARK REVDAT 4 13-APR-22 2O1O 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 2 1 LINK REVDAT 3 24-JAN-18 2O1O 1 AUTHOR REMARK HETSYN REVDAT 2 10-FEB-09 2O1O 1 VERSN JRNL REVDAT 1 12-DEC-06 2O1O 0 JRNL AUTH J.D.ARTZ,J.E.DUNFORD,M.J.ARROWOOD,A.DONG,M.CHRUSZCZ, JRNL AUTH 2 K.L.KAVANAGH,W.MINOR,R.G.RUSSELL,F.H.EBETINO,U.OPPERMANN, JRNL AUTH 3 R.HUI JRNL TITL TARGETING A UNIQUELY NONSPECIFIC PRENYL SYNTHASE WITH JRNL TITL 2 BISPHOSPHONATES TO COMBAT CRYPTOSPORIDIOSIS JRNL REF CHEM.BIOL. V. 15 1296 2008 JRNL REFN ISSN 1074-5521 JRNL PMID 19101474 JRNL DOI 10.1016/J.CHEMBIOL.2008.10.017 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.186 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1695 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 31541 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.180 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 28029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 5378.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 21516 REMARK 3 NUMBER OF RESTRAINTS : 21967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 ANGLE DISTANCES (A) : 0.022 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.028 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.042 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.065 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.129 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.098 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228 REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SHELXL-97, RESOLVE, AND COOT WERE USED REMARK 3 FOR REFINEMENT. REMARK 4 REMARK 4 2O1O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32655 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : 0.49000 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, RESOLVE REMARK 200 STARTING MODEL: PDB ENTRY 2HER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 10 MM MGCL2, REMARK 280 AND 100 MM HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.10433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.20867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 15 REMARK 465 ASN A 16 REMARK 465 LEU A 17 REMARK 465 TYR A 18 REMARK 465 PHE A 19 REMARK 465 GLN A 20 REMARK 465 GLY A 21 REMARK 465 GLU A 22 REMARK 465 SER A 358 REMARK 465 ARG A 359 REMARK 465 SER A 360 REMARK 465 ASN A 361 REMARK 465 ALA A 362 REMARK 465 ASP A 363 REMARK 465 SER A 364 REMARK 465 ASN A 365 REMARK 465 ASN A 366 REMARK 465 SER A 367 REMARK 465 LEU A 368 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 ARG B 14 REMARK 465 GLU B 15 REMARK 465 ASN B 16 REMARK 465 LEU B 17 REMARK 465 TYR B 18 REMARK 465 PHE B 19 REMARK 465 GLN B 20 REMARK 465 GLY B 21 REMARK 465 GLU B 22 REMARK 465 PRO B 47 REMARK 465 LEU B 48 REMARK 465 ASN B 49 REMARK 465 ASP B 50 REMARK 465 GLU B 51 REMARK 465 ILE B 52 REMARK 465 ARG B 53 REMARK 465 LYS B 54 REMARK 465 ALA B 362 REMARK 465 ASP B 363 REMARK 465 SER B 364 REMARK 465 ASN B 365 REMARK 465 ASN B 366 REMARK 465 SER B 367 REMARK 465 LEU B 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 44 CD CE NZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LEU A 48 CG CD1 CD2 REMARK 470 ASN A 49 CG OD1 ND2 REMARK 470 ASP A 50 CG OD1 OD2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 ILE A 78 O REMARK 470 LEU A 79 CG CD1 CD2 REMARK 470 LEU A 85 CD1 CD2 REMARK 470 SER A 86 OG REMARK 470 TYR A 89 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 92 CD1 REMARK 470 ARG A 94 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 154 CG1 CG2 CD1 REMARK 470 ASP A 192 CG OD1 OD2 REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 ILE A 229 CG1 CG2 CD1 REMARK 470 GLN A 230 CG CD OE1 NE2 REMARK 470 LEU A 236 CG CD1 CD2 REMARK 470 ILE A 242 CD1 REMARK 470 ILE A 269 CG1 CG2 CD1 REMARK 470 PHE A 272 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 ILE A 293 CG1 CG2 CD1 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 LYS A 299 CD CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 ASP A 334 CG OD1 OD2 REMARK 470 ILE A 335 CG1 CG2 CD1 REMARK 470 ASP A 337 CG OD1 OD2 REMARK 470 ASP A 338 CG OD1 OD2 REMARK 470 GLN A 341 CG CD OE1 NE2 REMARK 470 LYS A 342 CD CE NZ REMARK 470 ASN A 357 CG OD1 ND2 REMARK 470 TYR B 23 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 46 CG CD1 CD2 REMARK 470 SER B 84 OG REMARK 470 LEU B 85 CD1 CD2 REMARK 470 SER B 86 OG REMARK 470 SER B 87 OG REMARK 470 TYR B 89 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 191 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 193 CG CD1 CD2 REMARK 470 SER B 194 OG REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 GLN B 230 CG CD OE1 NE2 REMARK 470 VAL B 231 CG1 CG2 REMARK 470 LEU B 236 CG CD1 CD2 REMARK 470 ASN B 265 CG OD1 ND2 REMARK 470 LEU B 278 CG CD1 CD2 REMARK 470 LYS B 290 CE NZ REMARK 470 GLU B 295 CG CD OE1 OE2 REMARK 470 LYS B 299 NZ REMARK 470 ARG B 359 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 24 76.55 49.32 REMARK 500 PRO A 47 -164.79 -102.56 REMARK 500 LEU A 48 -52.59 73.81 REMARK 500 GLU A 51 44.02 71.91 REMARK 500 HIS A 73 67.37 70.19 REMARK 500 SER A 87 101.63 -162.03 REMARK 500 ILE A 92 -48.65 80.36 REMARK 500 SER A 194 -78.88 -75.42 REMARK 500 LYS A 195 93.22 -67.65 REMARK 500 GLU A 228 14.85 54.53 REMARK 500 GLN A 230 -159.27 -133.30 REMARK 500 ALA A 234 -73.76 -66.42 REMARK 500 GLN A 235 39.89 -90.10 REMARK 500 ASP A 267 -157.33 -136.61 REMARK 500 PHE A 272 79.53 -64.89 REMARK 500 LYS A 290 15.00 -69.02 REMARK 500 LYS A 299 -46.90 -134.09 REMARK 500 GLU A 315 -71.86 -60.14 REMARK 500 TYR B 25 -9.32 76.77 REMARK 500 LEU B 43 33.67 -85.22 REMARK 500 SER B 84 -79.10 -90.99 REMARK 500 SER B 90 -55.16 -137.74 REMARK 500 ILE B 92 40.12 -78.95 REMARK 500 GLU B 156 34.63 -92.98 REMARK 500 ALA B 196 41.53 -103.97 REMARK 500 LYS B 198 28.50 -141.78 REMARK 500 GLU B 228 34.67 72.37 REMARK 500 VAL B 231 -36.68 -171.34 REMARK 500 PHE B 272 76.69 52.87 REMARK 500 ASP B 338 -14.99 68.47 REMARK 500 ASN B 357 38.39 -92.74 REMARK 500 SER B 358 -157.21 -87.38 REMARK 500 ARG B 359 105.08 -51.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 261 ASN A 262 135.06 REMARK 500 THR B 26 ASP B 27 58.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 115 OD1 REMARK 620 2 ASP A 119 OD2 89.2 REMARK 620 3 RIS A 400 O15 73.6 79.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 115 OD2 REMARK 620 2 ASP A 119 OD2 94.8 REMARK 620 3 RIS A 400 O12 84.5 176.5 REMARK 620 4 RIS A 400 O15 89.6 81.5 95.1 REMARK 620 5 HOH A 510 O 76.7 94.7 88.5 165.5 REMARK 620 6 HOH A 512 O 148.7 93.5 88.9 121.5 72.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 254 OD1 REMARK 620 2 RIS A 400 O11 72.9 REMARK 620 3 RIS A 400 O16 76.5 80.8 REMARK 620 4 HOH A 511 O 97.4 169.6 100.9 REMARK 620 5 HOH A 513 O 160.6 94.5 87.1 95.8 REMARK 620 6 HOH A 514 O 95.8 106.9 167.2 69.7 102.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 115 OD2 REMARK 620 2 ASP B 119 OD2 79.5 REMARK 620 3 RIS B 400 O12 75.4 144.2 REMARK 620 4 RIS B 400 O15 66.1 68.5 78.1 REMARK 620 5 HOH B 518 O 69.8 110.1 84.6 135.4 REMARK 620 6 HOH B 519 O 165.5 106.0 93.4 103.0 119.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 119 OD2 REMARK 620 2 ASP B 187 OD2 121.0 REMARK 620 3 LYS B 273 NZ 95.3 97.2 REMARK 620 4 RIS B 400 O15 75.1 162.1 88.3 REMARK 620 5 HOH B 520 O 121.2 80.3 139.2 84.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 254 OD1 REMARK 620 2 RIS B 400 O11 79.5 REMARK 620 3 RIS B 400 O16 102.8 74.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RIS B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RIS A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HER RELATED DB: PDB DBREF 2O1O A 22 368 UNP Q5CR09 Q5CR09_CRYPV 38 384 DBREF 2O1O B 22 368 UNP Q5CR09 Q5CR09_CRYPV 38 384 SEQADV 2O1O MET A 1 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O GLY A 2 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O SER A 3 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O SER A 4 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O HIS A 5 UNP Q5CR09 EXPRESSION TAG SEQADV 2O1O HIS A 6 UNP Q5CR09 EXPRESSION TAG SEQADV 2O1O HIS A 7 UNP Q5CR09 EXPRESSION TAG SEQADV 2O1O HIS A 8 UNP Q5CR09 EXPRESSION TAG SEQADV 2O1O HIS A 9 UNP Q5CR09 EXPRESSION TAG SEQADV 2O1O HIS A 10 UNP Q5CR09 EXPRESSION TAG SEQADV 2O1O SER A 11 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O SER A 12 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O GLY A 13 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O ARG A 14 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O GLU A 15 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O ASN A 16 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O LEU A 17 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O TYR A 18 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O PHE A 19 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O GLN A 20 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O GLY A 21 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O MET B 1 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O GLY B 2 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O SER B 3 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O SER B 4 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O HIS B 5 UNP Q5CR09 EXPRESSION TAG SEQADV 2O1O HIS B 6 UNP Q5CR09 EXPRESSION TAG SEQADV 2O1O HIS B 7 UNP Q5CR09 EXPRESSION TAG SEQADV 2O1O HIS B 8 UNP Q5CR09 EXPRESSION TAG SEQADV 2O1O HIS B 9 UNP Q5CR09 EXPRESSION TAG SEQADV 2O1O HIS B 10 UNP Q5CR09 EXPRESSION TAG SEQADV 2O1O SER B 11 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O SER B 12 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O GLY B 13 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O ARG B 14 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O GLU B 15 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O ASN B 16 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O LEU B 17 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O TYR B 18 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O PHE B 19 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O GLN B 20 UNP Q5CR09 CLONING ARTIFACT SEQADV 2O1O GLY B 21 UNP Q5CR09 CLONING ARTIFACT SEQRES 1 A 368 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 368 ARG GLU ASN LEU TYR PHE GLN GLY GLU TYR ASP TYR THR SEQRES 3 A 368 ASP PHE ILE ASN TYR TYR ASP LYS PHE LYS VAL ILE VAL SEQRES 4 A 368 TYR ASN VAL LEU LYS LYS LEU PRO LEU ASN ASP GLU ILE SEQRES 5 A 368 ARG LYS PRO VAL ILE GLU TYR TYR LEU ASN CYS ILE ASP SEQRES 6 A 368 TYR ASN VAL LYS LYS GLY LYS HIS ILE ARG GLY LYS ILE SEQRES 7 A 368 LEU VAL LEU ILE SER SER LEU SER SER ALA TYR SER ASN SEQRES 8 A 368 ILE LYS ARG ASP SER ILE TYR LEU LEU GLY TRP VAL VAL SEQRES 9 A 368 GLU ALA ILE GLN ALA LEU ILE LEU ILE ALA ASP ASP ILE SEQRES 10 A 368 MET ASP SER GLY LYS PHE ARG ARG GLY ALA PRO CYS TRP SEQRES 11 A 368 TYR ILE VAL HIS GLY GLN SER ASN ALA ILE ASN ASP ILE SEQRES 12 A 368 PHE PHE LEU LYS MET LEU SER LEU SER LEU ILE PHE GLU SEQRES 13 A 368 LEU SER SER VAL PHE GLY ASN ASP ILE VAL MET LYS ILE SEQRES 14 A 368 GLN LYS ILE TYR ASN GLU SER ILE PHE PHE THR VAL LEU SEQRES 15 A 368 GLY GLN HIS LEU ASP LEU SER TYR PHE ASP LEU SER LYS SEQRES 16 A 368 ALA ASP LYS ILE SER GLU ARG TYR PHE SER MET VAL GLU SEQRES 17 A 368 MET LYS THR SER ARG TYR THR PHE TYR MET PRO VAL PHE SEQRES 18 A 368 PHE GLY LEU THR LEU SER GLU ILE GLN VAL SER SER ALA SEQRES 19 A 368 GLN LEU ASN LEU ILE GLU ALA ILE LEU TYR LYS LEU GLY SEQRES 20 A 368 GLU PHE TYR GLN VAL HIS ASN ASP VAL SER ASP TYR LEU SEQRES 21 A 368 PHE ASN ASP SER ASN ALA ASP ASP ILE CYS ARG PHE LYS SEQRES 22 A 368 LEU THR TRP PRO LEU GLN LYS SER PHE GLU ILE ALA ASP SEQRES 23 A 368 GLU GLU MET LYS LEU LYS ILE SER GLU ASN TYR GLY LYS SEQRES 24 A 368 ASN SER SER LEU VAL LYS ASP CYS TYR ASN LEU LEU LYS SEQRES 25 A 368 ILE ASN GLU HIS TYR LEU GLU TYR GLN ARG ASN ALA LEU SEQRES 26 A 368 ASP TYR LEU ILE LYS LEU VAL LYS ASP ILE THR ASP ASP SEQRES 27 A 368 SER LEU GLN LYS VAL PHE ILE HIS LEU ILE HIS GLN ILE SEQRES 28 A 368 SER GLU LEU ILE THR ASN SER ARG SER ASN ALA ASP SER SEQRES 29 A 368 ASN ASN SER LEU SEQRES 1 B 368 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 368 ARG GLU ASN LEU TYR PHE GLN GLY GLU TYR ASP TYR THR SEQRES 3 B 368 ASP PHE ILE ASN TYR TYR ASP LYS PHE LYS VAL ILE VAL SEQRES 4 B 368 TYR ASN VAL LEU LYS LYS LEU PRO LEU ASN ASP GLU ILE SEQRES 5 B 368 ARG LYS PRO VAL ILE GLU TYR TYR LEU ASN CYS ILE ASP SEQRES 6 B 368 TYR ASN VAL LYS LYS GLY LYS HIS ILE ARG GLY LYS ILE SEQRES 7 B 368 LEU VAL LEU ILE SER SER LEU SER SER ALA TYR SER ASN SEQRES 8 B 368 ILE LYS ARG ASP SER ILE TYR LEU LEU GLY TRP VAL VAL SEQRES 9 B 368 GLU ALA ILE GLN ALA LEU ILE LEU ILE ALA ASP ASP ILE SEQRES 10 B 368 MET ASP SER GLY LYS PHE ARG ARG GLY ALA PRO CYS TRP SEQRES 11 B 368 TYR ILE VAL HIS GLY GLN SER ASN ALA ILE ASN ASP ILE SEQRES 12 B 368 PHE PHE LEU LYS MET LEU SER LEU SER LEU ILE PHE GLU SEQRES 13 B 368 LEU SER SER VAL PHE GLY ASN ASP ILE VAL MET LYS ILE SEQRES 14 B 368 GLN LYS ILE TYR ASN GLU SER ILE PHE PHE THR VAL LEU SEQRES 15 B 368 GLY GLN HIS LEU ASP LEU SER TYR PHE ASP LEU SER LYS SEQRES 16 B 368 ALA ASP LYS ILE SER GLU ARG TYR PHE SER MET VAL GLU SEQRES 17 B 368 MET LYS THR SER ARG TYR THR PHE TYR MET PRO VAL PHE SEQRES 18 B 368 PHE GLY LEU THR LEU SER GLU ILE GLN VAL SER SER ALA SEQRES 19 B 368 GLN LEU ASN LEU ILE GLU ALA ILE LEU TYR LYS LEU GLY SEQRES 20 B 368 GLU PHE TYR GLN VAL HIS ASN ASP VAL SER ASP TYR LEU SEQRES 21 B 368 PHE ASN ASP SER ASN ALA ASP ASP ILE CYS ARG PHE LYS SEQRES 22 B 368 LEU THR TRP PRO LEU GLN LYS SER PHE GLU ILE ALA ASP SEQRES 23 B 368 GLU GLU MET LYS LEU LYS ILE SER GLU ASN TYR GLY LYS SEQRES 24 B 368 ASN SER SER LEU VAL LYS ASP CYS TYR ASN LEU LEU LYS SEQRES 25 B 368 ILE ASN GLU HIS TYR LEU GLU TYR GLN ARG ASN ALA LEU SEQRES 26 B 368 ASP TYR LEU ILE LYS LEU VAL LYS ASP ILE THR ASP ASP SEQRES 27 B 368 SER LEU GLN LYS VAL PHE ILE HIS LEU ILE HIS GLN ILE SEQRES 28 B 368 SER GLU LEU ILE THR ASN SER ARG SER ASN ALA ASP SER SEQRES 29 B 368 ASN ASN SER LEU HET MG A 501 1 HET MG A 502 1 HET MG A 503 1 HET RIS A 400 17 HET MG B 501 1 HET MG B 502 1 HET MG B 503 1 HET RIS B 400 17 HETNAM MG MAGNESIUM ION HETNAM RIS 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID HETSYN RIS RISEDRONATE FORMUL 3 MG 6(MG 2+) FORMUL 6 RIS 2(C7 H11 N O7 P2) FORMUL 11 HOH *28(H2 O) HELIX 1 1 TYR A 25 ASN A 30 1 6 HELIX 2 2 TYR A 31 LEU A 43 1 13 HELIX 3 3 PRO A 55 VAL A 68 1 14 HELIX 4 4 HIS A 73 SER A 87 1 15 HELIX 5 5 ILE A 92 ASP A 119 1 28 HELIX 6 6 CYS A 129 GLY A 135 1 7 HELIX 7 7 GLY A 135 PHE A 155 1 21 HELIX 8 8 LEU A 157 GLY A 162 1 6 HELIX 9 9 GLY A 162 SER A 189 1 28 HELIX 10 10 LYS A 198 THR A 211 1 14 HELIX 11 11 THR A 211 SER A 227 1 17 HELIX 12 12 SER A 233 GLN A 235 5 3 HELIX 13 13 LEU A 236 PHE A 261 1 26 HELIX 14 14 THR A 275 LYS A 280 1 6 HELIX 15 15 GLU A 288 TYR A 297 1 10 HELIX 16 16 ASN A 300 LYS A 312 1 13 HELIX 17 17 LYS A 312 LYS A 333 1 22 HELIX 18 18 ASP A 337 THR A 356 1 20 HELIX 19 19 PHE B 28 ASN B 30 5 3 HELIX 20 20 TYR B 31 LEU B 43 1 13 HELIX 21 21 PRO B 55 VAL B 68 1 14 HELIX 22 22 HIS B 73 SER B 86 1 14 HELIX 23 23 ILE B 92 ASP B 119 1 28 HELIX 24 24 CYS B 129 GLY B 135 1 7 HELIX 25 25 GLY B 135 GLU B 156 1 22 HELIX 26 26 LEU B 157 SER B 189 1 33 HELIX 27 27 LYS B 198 THR B 211 1 14 HELIX 28 28 THR B 211 PHE B 216 1 6 HELIX 29 29 PHE B 216 GLU B 228 1 13 HELIX 30 30 LEU B 236 ASN B 262 1 27 HELIX 31 31 THR B 275 ALA B 285 1 11 HELIX 32 32 GLU B 288 TYR B 297 1 10 HELIX 33 33 ASN B 300 LEU B 311 1 12 HELIX 34 34 LYS B 312 LYS B 333 1 22 HELIX 35 35 SER B 339 ASN B 357 1 19 SHEET 1 A 2 PHE A 123 ARG A 124 0 SHEET 2 A 2 ALA A 127 PRO A 128 -1 O ALA A 127 N ARG A 124 SHEET 1 B 2 PHE B 123 ARG B 124 0 SHEET 2 B 2 ALA B 127 PRO B 128 -1 O ALA B 127 N ARG B 124 LINK OD1 ASP A 115 MG MG A 502 1555 1555 2.11 LINK OD2 ASP A 115 MG MG A 503 1555 1555 2.31 LINK OD2 ASP A 119 MG MG A 502 1555 1555 2.04 LINK OD2 ASP A 119 MG MG A 503 1555 1555 2.63 LINK OD1 ASN A 254 MG MG A 501 1555 1555 2.24 LINK O11 RIS A 400 MG MG A 501 1555 1555 2.03 LINK O16 RIS A 400 MG MG A 501 1555 1555 2.36 LINK O15 RIS A 400 MG MG A 502 1555 1555 2.66 LINK O12 RIS A 400 MG MG A 503 1555 1555 2.01 LINK O15 RIS A 400 MG MG A 503 1555 1555 1.96 LINK MG MG A 501 O HOH A 511 1555 1555 2.42 LINK MG MG A 501 O HOH A 513 1555 1555 2.01 LINK MG MG A 501 O HOH A 514 1555 1555 1.83 LINK MG MG A 503 O HOH A 510 1555 1555 2.17 LINK MG MG A 503 O HOH A 512 1555 1555 2.18 LINK OD2 ASP B 115 MG MG B 502 1555 1555 2.56 LINK OD2 ASP B 119 MG MG B 502 1555 1555 2.76 LINK OD2 ASP B 119 MG MG B 503 1555 1555 2.45 LINK OD2 ASP B 187 MG MG B 503 1555 1555 2.58 LINK OD1 ASN B 254 MG MG B 501 1555 1555 2.10 LINK NZ LYS B 273 MG MG B 503 1555 1555 3.09 LINK O11 RIS B 400 MG MG B 501 1555 1555 1.92 LINK O16 RIS B 400 MG MG B 501 1555 1555 2.63 LINK O12 RIS B 400 MG MG B 502 1555 1555 1.97 LINK O15 RIS B 400 MG MG B 502 1555 1555 2.55 LINK O15 RIS B 400 MG MG B 503 1555 1555 2.46 LINK MG MG B 502 O HOH B 518 1555 1555 2.15 LINK MG MG B 502 O HOH B 519 1555 1555 2.05 LINK MG MG B 503 O HOH B 520 1555 1555 1.91 CISPEP 1 ILE A 229 GLN A 230 0 3.57 CISPEP 2 ASP B 24 TYR B 25 0 9.15 CISPEP 3 LYS B 45 LEU B 46 0 -0.01 CISPEP 4 GLN B 230 VAL B 231 0 16.42 CISPEP 5 TYR B 297 GLY B 298 0 -13.91 SITE 1 AC1 2 ASN B 254 RIS B 400 SITE 1 AC2 5 ASP B 115 ASP B 119 RIS B 400 HOH B 518 SITE 2 AC2 5 HOH B 519 SITE 1 AC3 6 ASP B 115 ASP B 119 ASP B 187 LYS B 273 SITE 2 AC3 6 RIS B 400 HOH B 520 SITE 1 AC4 5 ASN A 254 RIS A 400 HOH A 511 HOH A 513 SITE 2 AC4 5 HOH A 514 SITE 1 AC5 6 ASP A 115 ASP A 119 GLN A 184 ASP A 187 SITE 2 AC5 6 RIS A 400 MG A 503 SITE 1 AC6 6 ASP A 115 ASP A 119 RIS A 400 MG A 502 SITE 2 AC6 6 HOH A 510 HOH A 512 SITE 1 AC7 15 ASP B 115 ASP B 119 ARG B 124 LYS B 210 SITE 2 AC7 15 THR B 211 GLN B 251 ASN B 254 LYS B 273 SITE 3 AC7 15 MG B 501 MG B 502 MG B 503 HOH B 514 SITE 4 AC7 15 HOH B 518 HOH B 519 HOH B 520 SITE 1 AC8 14 ASP A 115 ASP A 119 ARG A 124 GLN A 184 SITE 2 AC8 14 LYS A 210 THR A 211 GLN A 251 ASN A 254 SITE 3 AC8 14 MG A 501 MG A 502 MG A 503 HOH A 510 SITE 4 AC8 14 HOH A 512 HOH A 513 CRYST1 101.758 101.758 75.313 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009827 0.005674 0.000000 0.00000 SCALE2 0.000000 0.011348 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013278 0.00000