HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-NOV-06 2O2A TITLE THE CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION FROM TITLE 2 STREPTOCOCCUS AGALACTIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN GBS1413; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 208435; SOURCE 4 STRAIN: 2603V/R; SOURCE 5 GENE: GI:22534369; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS STREPTOCOCCUS AGALACTIAE, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,M.ZHOU,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 27-DEC-23 2O2A 1 SEQADV LINK REVDAT 3 13-JUL-11 2O2A 1 VERSN REVDAT 2 24-FEB-09 2O2A 1 VERSN REVDAT 1 26-DEC-06 2O2A 0 JRNL AUTH R.ZHANG,M.ZHOU,J.ABDULLAH,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION FROM JRNL TITL 2 STREPTOCOCCUS AGALACTIAE JRNL REF TO BE PUBLISHED 2006 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1703 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2311 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : -0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.482 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4110 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2703 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5582 ; 1.501 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6602 ; 0.912 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 497 ; 7.815 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;40.826 ;25.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 711 ;16.004 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.139 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 645 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4600 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 812 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 782 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2784 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1901 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2342 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 234 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.042 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.252 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.326 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3019 ; 1.086 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 998 ; 0.187 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4074 ; 1.428 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1756 ; 2.128 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1508 ; 3.192 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 12 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 40 REMARK 3 RESIDUE RANGE : A 41 A 80 REMARK 3 RESIDUE RANGE : A 81 A 124 REMARK 3 RESIDUE RANGE : B 1 B 40 REMARK 3 RESIDUE RANGE : B 41 B 80 REMARK 3 RESIDUE RANGE : B 81 B 124 REMARK 3 RESIDUE RANGE : C 1 C 40 REMARK 3 RESIDUE RANGE : C 41 C 80 REMARK 3 RESIDUE RANGE : C 81 C 124 REMARK 3 RESIDUE RANGE : D 1 D 40 REMARK 3 RESIDUE RANGE : D 41 D 80 REMARK 3 RESIDUE RANGE : D 81 D 123 REMARK 3 ORIGIN FOR THE GROUP (A): 64.7170 -4.1620 116.0080 REMARK 3 T TENSOR REMARK 3 T11: -0.0370 T22: -0.0635 REMARK 3 T33: -0.1604 T12: -0.0053 REMARK 3 T13: -0.0235 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.8522 L22: 0.6352 REMARK 3 L33: 0.8070 L12: -0.4980 REMARK 3 L13: -0.6971 L23: 0.3226 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: 0.0062 S13: -0.0154 REMARK 3 S21: -0.0257 S22: 0.0251 S23: -0.0209 REMARK 3 S31: 0.0562 S32: 0.0236 S33: -0.0175 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31918 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE TRIHYDRATE, 3 M REMARK 280 SODIUM CHLORIDE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 51.55500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.76529 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 92.80267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 51.55500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.76529 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 92.80267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 51.55500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.76529 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 92.80267 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 51.55500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.76529 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 92.80267 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 51.55500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.76529 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 92.80267 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 51.55500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.76529 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 92.80267 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.53059 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 185.60533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 59.53059 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 185.60533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 59.53059 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 185.60533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 59.53059 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 185.60533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 59.53059 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 185.60533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 59.53059 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 185.60533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 131 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -1 REMARK 465 ASN A 125 REMARK 465 SER A 126 REMARK 465 ASN B 125 REMARK 465 SER B 126 REMARK 465 ASN C 125 REMARK 465 SER C 126 REMARK 465 ALA D -1 REMARK 465 PHE D 124 REMARK 465 ASN D 125 REMARK 465 SER D 126 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 128 O HOH C 193 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 105 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 105 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG C 105 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 40 -74.62 -93.68 REMARK 500 ASN B 41 -158.58 -169.49 REMARK 500 ASP B 43 70.14 -152.78 REMARK 500 LYS B 47 70.60 48.69 REMARK 500 ASP B 116 73.96 59.46 REMARK 500 ARG B 117 147.17 169.72 REMARK 500 ASP D 116 67.06 37.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC85695 RELATED DB: TARGETDB DBREF 2O2A A 1 126 UNP Q8E4I8 Q8E4I8_STRA3 1 126 DBREF 2O2A B 1 126 UNP Q8E4I8 Q8E4I8_STRA3 1 126 DBREF 2O2A C 1 126 UNP Q8E4I8 Q8E4I8_STRA3 1 126 DBREF 2O2A D 1 126 UNP Q8E4I8 Q8E4I8_STRA3 1 126 SEQADV 2O2A ALA A -1 UNP Q8E4I8 CLONING ARTIFACT SEQADV 2O2A ALA A 0 UNP Q8E4I8 CLONING ARTIFACT SEQADV 2O2A MSE A 1 UNP Q8E4I8 MET 1 MODIFIED RESIDUE SEQADV 2O2A MSE A 73 UNP Q8E4I8 MET 73 MODIFIED RESIDUE SEQADV 2O2A ALA B -1 UNP Q8E4I8 CLONING ARTIFACT SEQADV 2O2A ALA B 0 UNP Q8E4I8 CLONING ARTIFACT SEQADV 2O2A MSE B 1 UNP Q8E4I8 MET 1 MODIFIED RESIDUE SEQADV 2O2A MSE B 73 UNP Q8E4I8 MET 73 MODIFIED RESIDUE SEQADV 2O2A ALA C -1 UNP Q8E4I8 CLONING ARTIFACT SEQADV 2O2A ALA C 0 UNP Q8E4I8 CLONING ARTIFACT SEQADV 2O2A MSE C 1 UNP Q8E4I8 MET 1 MODIFIED RESIDUE SEQADV 2O2A MSE C 73 UNP Q8E4I8 MET 73 MODIFIED RESIDUE SEQADV 2O2A ALA D -1 UNP Q8E4I8 CLONING ARTIFACT SEQADV 2O2A ALA D 0 UNP Q8E4I8 CLONING ARTIFACT SEQADV 2O2A MSE D 1 UNP Q8E4I8 MET 1 MODIFIED RESIDUE SEQADV 2O2A MSE D 73 UNP Q8E4I8 MET 73 MODIFIED RESIDUE SEQRES 1 A 128 ALA ALA MSE GLU VAL ILE ARG GLU GLN GLU PHE VAL ASN SEQRES 2 A 128 GLN TYR HIS TYR ASP ALA ARG ASN LEU GLU TRP GLU GLU SEQRES 3 A 128 GLU ASN GLY THR PRO LYS THR ASN PHE GLU VAL THR PHE SEQRES 4 A 128 GLN LEU ALA ASN ARG ASP GLU ALA ALA LYS VAL THR SER SEQRES 5 A 128 ILE VAL ALA VAL LEU GLN PHE VAL ILE VAL ARG ASP GLU SEQRES 6 A 128 PHE VAL ILE SER GLY VAL ILE SER GLN MSE ALA HIS ILE SEQRES 7 A 128 GLN GLY ARG LEU ILE ASN GLU PRO SER GLU PHE SER GLN SEQRES 8 A 128 ASP GLU VAL GLU ASN LEU ALA ALA PRO LEU LEU GLU ILE SEQRES 9 A 128 VAL LYS ARG LEU THR TYR GLU VAL THR GLU ILE ALA LEU SEQRES 10 A 128 ASP ARG PRO GLY VAL THR LEU GLU PHE ASN SER SEQRES 1 B 128 ALA ALA MSE GLU VAL ILE ARG GLU GLN GLU PHE VAL ASN SEQRES 2 B 128 GLN TYR HIS TYR ASP ALA ARG ASN LEU GLU TRP GLU GLU SEQRES 3 B 128 GLU ASN GLY THR PRO LYS THR ASN PHE GLU VAL THR PHE SEQRES 4 B 128 GLN LEU ALA ASN ARG ASP GLU ALA ALA LYS VAL THR SER SEQRES 5 B 128 ILE VAL ALA VAL LEU GLN PHE VAL ILE VAL ARG ASP GLU SEQRES 6 B 128 PHE VAL ILE SER GLY VAL ILE SER GLN MSE ALA HIS ILE SEQRES 7 B 128 GLN GLY ARG LEU ILE ASN GLU PRO SER GLU PHE SER GLN SEQRES 8 B 128 ASP GLU VAL GLU ASN LEU ALA ALA PRO LEU LEU GLU ILE SEQRES 9 B 128 VAL LYS ARG LEU THR TYR GLU VAL THR GLU ILE ALA LEU SEQRES 10 B 128 ASP ARG PRO GLY VAL THR LEU GLU PHE ASN SER SEQRES 1 C 128 ALA ALA MSE GLU VAL ILE ARG GLU GLN GLU PHE VAL ASN SEQRES 2 C 128 GLN TYR HIS TYR ASP ALA ARG ASN LEU GLU TRP GLU GLU SEQRES 3 C 128 GLU ASN GLY THR PRO LYS THR ASN PHE GLU VAL THR PHE SEQRES 4 C 128 GLN LEU ALA ASN ARG ASP GLU ALA ALA LYS VAL THR SER SEQRES 5 C 128 ILE VAL ALA VAL LEU GLN PHE VAL ILE VAL ARG ASP GLU SEQRES 6 C 128 PHE VAL ILE SER GLY VAL ILE SER GLN MSE ALA HIS ILE SEQRES 7 C 128 GLN GLY ARG LEU ILE ASN GLU PRO SER GLU PHE SER GLN SEQRES 8 C 128 ASP GLU VAL GLU ASN LEU ALA ALA PRO LEU LEU GLU ILE SEQRES 9 C 128 VAL LYS ARG LEU THR TYR GLU VAL THR GLU ILE ALA LEU SEQRES 10 C 128 ASP ARG PRO GLY VAL THR LEU GLU PHE ASN SER SEQRES 1 D 128 ALA ALA MSE GLU VAL ILE ARG GLU GLN GLU PHE VAL ASN SEQRES 2 D 128 GLN TYR HIS TYR ASP ALA ARG ASN LEU GLU TRP GLU GLU SEQRES 3 D 128 GLU ASN GLY THR PRO LYS THR ASN PHE GLU VAL THR PHE SEQRES 4 D 128 GLN LEU ALA ASN ARG ASP GLU ALA ALA LYS VAL THR SER SEQRES 5 D 128 ILE VAL ALA VAL LEU GLN PHE VAL ILE VAL ARG ASP GLU SEQRES 6 D 128 PHE VAL ILE SER GLY VAL ILE SER GLN MSE ALA HIS ILE SEQRES 7 D 128 GLN GLY ARG LEU ILE ASN GLU PRO SER GLU PHE SER GLN SEQRES 8 D 128 ASP GLU VAL GLU ASN LEU ALA ALA PRO LEU LEU GLU ILE SEQRES 9 D 128 VAL LYS ARG LEU THR TYR GLU VAL THR GLU ILE ALA LEU SEQRES 10 D 128 ASP ARG PRO GLY VAL THR LEU GLU PHE ASN SER MODRES 2O2A MSE A 1 MET SELENOMETHIONINE MODRES 2O2A MSE A 73 MET SELENOMETHIONINE MODRES 2O2A MSE B 1 MET SELENOMETHIONINE MODRES 2O2A MSE B 73 MET SELENOMETHIONINE MODRES 2O2A MSE C 1 MET SELENOMETHIONINE MODRES 2O2A MSE C 73 MET SELENOMETHIONINE MODRES 2O2A MSE D 1 MET SELENOMETHIONINE MODRES 2O2A MSE D 73 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 73 8 HET MSE B 1 8 HET MSE B 73 8 HET MSE C 1 8 HET MSE C 73 8 HET MSE D 1 8 HET MSE D 73 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 HOH *242(H2 O) HELIX 1 1 ASN A 19 GLY A 27 1 9 HELIX 2 2 GLU A 83 PHE A 87 5 5 HELIX 3 3 SER A 88 LEU A 115 1 28 HELIX 4 4 ASN B 19 GLY B 27 1 9 HELIX 5 5 GLU B 83 PHE B 87 5 5 HELIX 6 6 SER B 88 ASP B 116 1 29 HELIX 7 7 ASN C 19 GLY C 27 1 9 HELIX 8 8 GLU C 83 PHE C 87 5 5 HELIX 9 9 SER C 88 ASP C 116 1 29 HELIX 10 10 ASN D 19 GLY D 27 1 9 HELIX 11 11 GLU D 83 PHE D 87 5 5 HELIX 12 12 SER D 88 ASP D 116 1 29 SHEET 1 A 6 VAL A 3 ARG A 5 0 SHEET 2 A 6 PHE A 64 GLN A 77 -1 O HIS A 75 N ILE A 4 SHEET 3 A 6 PHE A 9 ALA A 17 -1 N PHE A 9 O SER A 71 SHEET 4 A 6 PHE B 9 ALA B 17 -1 O TYR B 13 N TYR A 15 SHEET 5 A 6 PHE B 64 GLN B 77 -1 O SER B 67 N HIS B 14 SHEET 6 A 6 GLU B 2 ARG B 5 -1 N ILE B 4 O HIS B 75 SHEET 1 B 8 ASN A 32 ASP A 43 0 SHEET 2 B 8 VAL A 48 VAL A 60 -1 O SER A 50 N ASN A 41 SHEET 3 B 8 PHE A 64 GLN A 77 -1 O ILE A 66 N ILE A 59 SHEET 4 B 8 PHE A 9 ALA A 17 -1 N PHE A 9 O SER A 71 SHEET 5 B 8 PHE B 9 ALA B 17 -1 O TYR B 13 N TYR A 15 SHEET 6 B 8 PHE B 64 GLN B 77 -1 O SER B 67 N HIS B 14 SHEET 7 B 8 VAL B 48 ARG B 61 -1 N LEU B 55 O ILE B 70 SHEET 8 B 8 ASN B 32 ARG B 42 -1 N ALA B 40 O SER B 50 SHEET 1 C 6 GLU C 2 ARG C 5 0 SHEET 2 C 6 PHE C 64 GLN C 77 -1 O GLN C 77 N GLU C 2 SHEET 3 C 6 PHE C 9 ALA C 17 -1 N HIS C 14 O SER C 67 SHEET 4 C 6 PHE D 9 ALA D 17 -1 O TYR D 15 N TYR C 13 SHEET 5 C 6 PHE D 64 GLN D 77 -1 O SER D 67 N HIS D 14 SHEET 6 C 6 GLU D 2 ARG D 5 -1 N GLU D 2 O GLN D 77 SHEET 1 D 8 ASN C 32 ASP C 43 0 SHEET 2 D 8 VAL C 48 VAL C 60 -1 O VAL C 48 N ASP C 43 SHEET 3 D 8 PHE C 64 GLN C 77 -1 O ILE C 66 N ILE C 59 SHEET 4 D 8 PHE C 9 ALA C 17 -1 N HIS C 14 O SER C 67 SHEET 5 D 8 PHE D 9 ALA D 17 -1 O TYR D 15 N TYR C 13 SHEET 6 D 8 PHE D 64 GLN D 77 -1 O SER D 67 N HIS D 14 SHEET 7 D 8 VAL D 48 ARG D 61 -1 N ILE D 59 O ILE D 66 SHEET 8 D 8 ASN D 32 ASP D 43 -1 N ALA D 40 O SER D 50 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C GLN A 72 N MSE A 73 1555 1555 1.33 LINK C MSE A 73 N ALA A 74 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N GLU B 2 1555 1555 1.34 LINK C GLN B 72 N MSE B 73 1555 1555 1.33 LINK C MSE B 73 N ALA B 74 1555 1555 1.34 LINK C ALA C 0 N MSE C 1 1555 1555 1.33 LINK C MSE C 1 N GLU C 2 1555 1555 1.33 LINK C GLN C 72 N MSE C 73 1555 1555 1.33 LINK C MSE C 73 N ALA C 74 1555 1555 1.34 LINK C ALA D 0 N MSE D 1 1555 1555 1.33 LINK C MSE D 1 N GLU D 2 1555 1555 1.33 LINK C GLN D 72 N MSE D 73 1555 1555 1.33 LINK C MSE D 73 N ALA D 74 1555 1555 1.34 CRYST1 103.110 103.110 278.408 90.00 90.00 120.00 H 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009698 0.005599 0.000000 0.00000 SCALE2 0.000000 0.011199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003592 0.00000