HEADER STRUCTURAL PROTEIN 30-NOV-06 2O2T TITLE THE CRYSTAL STRUCTURE OF THE 1ST PDZ DOMAIN OF MPDZ COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIPLE PDZ DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FIRST PDZ DOMAIN; COMPND 5 SYNONYM: MULTI PDZ DOMAIN PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MPDZ, MUPP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS STRUCTURAL PROTEIN, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR E.PAPAGRIGORIOU,C.GILEADI,C.PHILLIPS,C.JOHANSSON,E.SALAH,P.SAVITSKY, AUTHOR 2 F.GORREC,C.UMEANO,G.BERRIDGE,A.C.W.PIKE,J.ELKINS,A.EDWARDS, AUTHOR 3 C.ARROWSMITH,J.WEIGELT,M.SUNDSTROM,D.A.DOYLE,STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (SGC) REVDAT 4 27-DEC-23 2O2T 1 SEQADV REVDAT 3 13-JUL-11 2O2T 1 VERSN REVDAT 2 24-FEB-09 2O2T 1 VERSN REVDAT 1 12-DEC-06 2O2T 0 JRNL AUTH E.PAPAGRIGORIOU,C.GILEADI,C.PHILLIPS,J.ELKINS,C.JOHANSSON, JRNL AUTH 2 E.SALAH,P.SAVITSKY,G.BERRIDGE,D.A.DOYLE JRNL TITL THE CRYSTAL STRUCTURE OF THE 1ST PDZ DOMAIN OF MPDZ JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 390 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 555 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.67000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : -5.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.754 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.370 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.299 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.678 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1631 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1058 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2207 ; 1.250 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2605 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 215 ; 5.884 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;35.494 ;25.152 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 272 ;17.449 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.653 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 266 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1836 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 300 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 331 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1091 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 791 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 931 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 44 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.111 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 22 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.293 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1113 ; 0.334 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 450 ; 0.117 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1719 ; 0.503 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 569 ; 1.004 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 488 ; 1.664 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 119 A 158 2 REMARK 3 1 B 121 B 158 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 220 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 222 ; 0.46 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 220 ; 0.06 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 222 ; 0.28 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 163 A 231 2 REMARK 3 1 B 163 B 231 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 408 ; 0.03 ; 0.05 REMARK 3 MEDIUM POSITIONAL 2 A (A): 408 ; 0.73 ; 0.50 REMARK 3 TIGHT THERMAL 2 A (A**2): 408 ; 0.06 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 408 ; 0.35 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0658 -0.3467 32.8807 REMARK 3 T TENSOR REMARK 3 T11: 0.1207 T22: 0.0394 REMARK 3 T33: -0.0133 T12: -0.0195 REMARK 3 T13: 0.0296 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 4.5143 L22: 5.5893 REMARK 3 L33: 6.6441 L12: -0.8614 REMARK 3 L13: -1.6639 L23: 1.4371 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: 0.2413 S13: -0.0598 REMARK 3 S21: 0.0027 S22: -0.1177 S23: 0.2583 REMARK 3 S31: 0.0567 S32: -0.5955 S33: 0.1673 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 121 B 231 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7618 6.6235 9.5408 REMARK 3 T TENSOR REMARK 3 T11: -0.0103 T22: 0.1705 REMARK 3 T33: 0.0436 T12: -0.0417 REMARK 3 T13: -0.0553 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 3.1080 L22: 7.0351 REMARK 3 L33: 6.7973 L12: 0.3469 REMARK 3 L13: -1.5141 L23: -2.6811 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: -0.0483 S13: 0.0233 REMARK 3 S21: 0.1877 S22: -0.1798 S23: -0.3720 REMARK 3 S31: -0.1456 S32: 0.7692 S33: 0.1888 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8029 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.08350 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.51290 REMARK 200 R SYM FOR SHELL (I) : 0.54500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5% JEFFAMINE 2001, 1.1M SODIUM REMARK 280 MALONATE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.18300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.18300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EACH MONOMER REPRESENTS THE BIOLOGICAL ASSEMBLY. TWO REMARK 300 BIOLOGICAL UNITS IN THE ASU REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 115 REMARK 465 MET A 116 REMARK 465 PRO A 117 REMARK 465 ALA A 118 REMARK 465 ARG A 160 REMARK 465 GLY A 161 REMARK 465 SER B 115 REMARK 465 MET B 116 REMARK 465 PRO B 117 REMARK 465 ALA B 118 REMARK 465 CYS B 119 REMARK 465 ASP B 120 REMARK 465 ASN B 159 REMARK 465 ARG B 160 REMARK 465 GLY B 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 119 SG REMARK 470 ASP A 120 CG OD1 OD2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LEU A 125 CD1 CD2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 ASN A 159 CG OD1 ND2 REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 GLN A 198 CD OE1 NE2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 LYS A 213 CE NZ REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 PHE B 122 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 123 CG OD1 OD2 REMARK 470 GLN B 124 CD OE1 NE2 REMARK 470 LYS B 127 CD CE NZ REMARK 470 GLU B 136 CD OE1 OE2 REMARK 470 ARG B 156 CD NE CZ NH1 NH2 REMARK 470 GLU B 162 CD OE1 OE2 REMARK 470 ILE B 165 CD1 REMARK 470 GLN B 168 CD OE1 NE2 REMARK 470 LYS B 183 CE NZ REMARK 470 ASP B 197 OD1 OD2 REMARK 470 GLN B 198 CG CD OE1 NE2 REMARK 470 GLN B 204 CG CD OE1 NE2 REMARK 470 LYS B 211 CD CE NZ REMARK 470 LYS B 213 NZ REMARK 470 ARG B 222 CD NE CZ NH1 NH2 REMARK 470 SER B 224 OG REMARK 470 TYR B 229 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 230 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 168 -62.09 -107.68 REMARK 500 THR A 185 -14.15 96.43 REMARK 500 ASP A 214 -128.48 55.81 REMARK 500 SER B 157 -157.45 -97.03 REMARK 500 THR B 185 -12.85 92.13 REMARK 500 ASP B 214 -129.82 56.34 REMARK 500 SER B 224 -168.46 -113.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 2O2T A 117 227 UNP O75970 MPDZ_HUMAN 117 227 DBREF 2O2T B 117 227 UNP O75970 MPDZ_HUMAN 117 227 SEQADV 2O2T SER A 115 UNP O75970 CLONING ARTIFACT SEQADV 2O2T MET A 116 UNP O75970 CLONING ARTIFACT SEQADV 2O2T TYR A 228 UNP O75970 CLONING ARTIFACT SEQADV 2O2T TYR A 229 UNP O75970 CLONING ARTIFACT SEQADV 2O2T LYS A 230 UNP O75970 CLONING ARTIFACT SEQADV 2O2T VAL A 231 UNP O75970 CLONING ARTIFACT SEQADV 2O2T SER B 115 UNP O75970 CLONING ARTIFACT SEQADV 2O2T MET B 116 UNP O75970 CLONING ARTIFACT SEQADV 2O2T TYR B 228 UNP O75970 CLONING ARTIFACT SEQADV 2O2T TYR B 229 UNP O75970 CLONING ARTIFACT SEQADV 2O2T LYS B 230 UNP O75970 CLONING ARTIFACT SEQADV 2O2T VAL B 231 UNP O75970 CLONING ARTIFACT SEQRES 1 A 117 SER MET PRO ALA CYS ASP GLU PHE ASP GLN LEU ILE LYS SEQRES 2 A 117 ASN MET ALA GLN GLY ARG HIS VAL GLU VAL PHE GLU LEU SEQRES 3 A 117 LEU LYS PRO PRO SER GLY GLY LEU GLY PHE SER VAL VAL SEQRES 4 A 117 GLY LEU ARG SER GLU ASN ARG GLY GLU LEU GLY ILE PHE SEQRES 5 A 117 VAL GLN GLU ILE GLN GLU GLY SER VAL ALA HIS ARG ASP SEQRES 6 A 117 GLY ARG LEU LYS GLU THR ASP GLN ILE LEU ALA ILE ASN SEQRES 7 A 117 GLY GLN ALA LEU ASP GLN THR ILE THR HIS GLN GLN ALA SEQRES 8 A 117 ILE SER ILE LEU GLN LYS ALA LYS ASP THR VAL GLN LEU SEQRES 9 A 117 VAL ILE ALA ARG GLY SER LEU PRO GLN TYR TYR LYS VAL SEQRES 1 B 117 SER MET PRO ALA CYS ASP GLU PHE ASP GLN LEU ILE LYS SEQRES 2 B 117 ASN MET ALA GLN GLY ARG HIS VAL GLU VAL PHE GLU LEU SEQRES 3 B 117 LEU LYS PRO PRO SER GLY GLY LEU GLY PHE SER VAL VAL SEQRES 4 B 117 GLY LEU ARG SER GLU ASN ARG GLY GLU LEU GLY ILE PHE SEQRES 5 B 117 VAL GLN GLU ILE GLN GLU GLY SER VAL ALA HIS ARG ASP SEQRES 6 B 117 GLY ARG LEU LYS GLU THR ASP GLN ILE LEU ALA ILE ASN SEQRES 7 B 117 GLY GLN ALA LEU ASP GLN THR ILE THR HIS GLN GLN ALA SEQRES 8 B 117 ILE SER ILE LEU GLN LYS ALA LYS ASP THR VAL GLN LEU SEQRES 9 B 117 VAL ILE ALA ARG GLY SER LEU PRO GLN TYR TYR LYS VAL FORMUL 3 HOH *25(H2 O) HELIX 1 1 CYS A 119 GLN A 131 1 13 HELIX 2 2 SER A 174 GLY A 180 1 7 HELIX 3 3 THR A 201 ALA A 212 1 12 HELIX 4 4 LEU A 225 LYS A 230 5 6 HELIX 5 5 GLU B 121 GLN B 131 1 11 HELIX 6 6 SER B 174 GLY B 180 1 7 HELIX 7 7 THR B 201 ALA B 212 1 12 HELIX 8 8 LEU B 225 LYS B 230 5 6 SHEET 1 A 5 VAL A 135 LEU A 141 0 SHEET 2 A 5 THR A 215 ALA A 221 -1 O ILE A 220 N GLU A 136 SHEET 3 A 5 GLN A 187 ILE A 191 -1 N LEU A 189 O VAL A 219 SHEET 4 A 5 LEU A 163 VAL A 167 -1 N ILE A 165 O ILE A 188 SHEET 5 A 5 VAL A 152 ARG A 156 -1 N VAL A 153 O PHE A 166 SHEET 1 B 4 VAL A 135 LEU A 141 0 SHEET 2 B 4 THR A 215 ALA A 221 -1 O ILE A 220 N GLU A 136 SHEET 3 B 4 GLN A 187 ILE A 191 -1 N LEU A 189 O VAL A 219 SHEET 4 B 4 GLN A 194 ALA A 195 -1 O GLN A 194 N ILE A 191 SHEET 1 C 4 VAL B 135 LEU B 141 0 SHEET 2 C 4 THR B 215 ALA B 221 -1 O VAL B 216 N LEU B 140 SHEET 3 C 4 GLN B 187 ILE B 191 -1 N GLN B 187 O ALA B 221 SHEET 4 C 4 GLN B 194 ALA B 195 -1 O GLN B 194 N ILE B 191 SHEET 1 D 2 VAL B 152 ARG B 156 0 SHEET 2 D 2 LEU B 163 VAL B 167 -1 O PHE B 166 N VAL B 153 CRYST1 100.366 32.660 92.803 90.00 110.68 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009964 0.000000 0.003761 0.00000 SCALE2 0.000000 0.030618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011518 0.00000