HEADER HYDROLASE 01-DEC-06 2O3Q TITLE STRUCTURAL BASIS FOR FORMATION AND HYDROLYSIS OF CALCIUM MESSENGER TITLE 2 CYCLIC ADP-RIBOSE BY HUMAN CD38 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYL CYCLASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, RESIDUES 45-300; COMPND 5 SYNONYM: CYCLIC ADP-RIBOSE HYDROLASE 1, CADPR HYDROLASE 1, LYMPHOCYTE COMPND 6 DIFFERENTIATION ANTIGEN CD38, T10, ACUTE LYMPHOBLASTIC LEUKEMIA CELLS COMPND 7 ANTIGEN CD38; COMPND 8 EC: 3.2.2.5; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD38; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZAA KEYWDS HUMAN CD38 E226Q MUTANT, THE CATALYTIC POCKET, CADPR FORMATION AND KEYWDS 2 HYDROLYSIS, SUBSTRATE BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.LIU,I.A.KRIKSUNOV,R.GRAEFF,H.C.LEE,Q.HAO REVDAT 6 30-AUG-23 2O3Q 1 REMARK REVDAT 5 20-OCT-21 2O3Q 1 REMARK SEQADV REVDAT 4 13-JUL-11 2O3Q 1 VERSN REVDAT 3 24-FEB-09 2O3Q 1 VERSN REVDAT 2 03-APR-07 2O3Q 1 JRNL REVDAT 1 12-DEC-06 2O3Q 0 JRNL AUTH Q.LIU,I.A.KRIKSUNOV,R.GRAEFF,H.C.LEE,Q.HAO JRNL TITL STRUCTURAL BASIS FOR FORMATION AND HYDROLYSIS OF THE CALCIUM JRNL TITL 2 MESSENGER CYCLIC ADP-RIBOSE BY HUMAN CD38 JRNL REF J.BIOL.CHEM. V. 282 5853 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17182614 JRNL DOI 10.1074/JBC.M609093200 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1713 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2120 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4016 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 291 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : 0.70000 REMARK 3 B12 (A**2) : 0.59000 REMARK 3 B13 (A**2) : 0.31000 REMARK 3 B23 (A**2) : 0.34000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.438 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4206 ; 0.035 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5718 ; 2.520 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 502 ; 8.377 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;38.846 ;24.021 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 712 ;20.040 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;24.575 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 612 ; 0.184 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3156 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2164 ; 0.274 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2803 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 317 ; 0.216 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.269 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.245 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2590 ; 1.486 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4052 ; 2.260 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1932 ; 3.830 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1666 ; 5.326 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0865 -0.1899 0.7501 REMARK 3 T TENSOR REMARK 3 T11: -0.1746 T22: -0.1426 REMARK 3 T33: -0.2031 T12: -0.0236 REMARK 3 T13: -0.0045 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.6105 L22: 3.9903 REMARK 3 L33: 0.6037 L12: -1.4105 REMARK 3 L13: 0.1014 L23: -0.4281 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.0308 S13: -0.1424 REMARK 3 S21: 0.2378 S22: 0.1003 S23: -0.0472 REMARK 3 S31: -0.0010 S32: -0.0045 S33: -0.0578 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 296 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3280 8.1837 -28.9491 REMARK 3 T TENSOR REMARK 3 T11: -0.1205 T22: -0.0895 REMARK 3 T33: -0.1391 T12: 0.0260 REMARK 3 T13: -0.0106 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.0712 L22: 1.5297 REMARK 3 L33: 4.6294 L12: 0.1079 REMARK 3 L13: -0.3734 L23: 0.9827 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: 0.3749 S13: -0.2798 REMARK 3 S21: -0.2161 S22: -0.0708 S23: 0.0481 REMARK 3 S31: 0.2931 S32: -0.1194 S33: 0.0504 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2O3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34368 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1YH3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 12% PEG4000, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE TWO BIOLOGICAL UNITS IN THE CRYSTALLOGRAPHIC REMARK 300 ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 39 REMARK 465 ARG A 40 REMARK 465 GLU A 41 REMARK 465 ALA A 42 REMARK 465 GLU A 43 REMARK 465 ALA A 44 REMARK 465 THR A 297 REMARK 465 SER A 298 REMARK 465 GLU A 299 REMARK 465 ILE A 300 REMARK 465 LYS B 39 REMARK 465 ARG B 40 REMARK 465 GLU B 41 REMARK 465 ALA B 42 REMARK 465 GLU B 43 REMARK 465 ALA B 44 REMARK 465 THR B 297 REMARK 465 SER B 298 REMARK 465 GLU B 299 REMARK 465 ILE B 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 247 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 248 CB CG CD OE1 OE2 REMARK 470 ASP A 249 CB CG OD1 OD2 REMARK 470 ARG A 280 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN A 290 CG OD1 ND2 REMARK 470 PRO A 291 CB CG CD REMARK 470 GLU A 292 CB CG CD OE1 OE2 REMARK 470 ASP A 293 CB CG OD1 OD2 REMARK 470 SER A 294 CB OG REMARK 470 SER A 295 CB OG REMARK 470 ARG B 247 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU B 248 CB CG CD OE1 OE2 REMARK 470 ASP B 249 CB CG OD1 OD2 REMARK 470 ARG B 280 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN B 290 CG OD1 ND2 REMARK 470 PRO B 291 CB CG CD REMARK 470 GLU B 292 CB CG CD OE1 OE2 REMARK 470 ASP B 293 CB CG OD1 OD2 REMARK 470 SER B 294 CB OG REMARK 470 SER B 295 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 141 C MET A 142 N -0.162 REMARK 500 CYS A 173 CB CYS A 173 SG -0.166 REMARK 500 ARG A 195 CG ARG A 195 CD 0.164 REMARK 500 VAL A 203 CB VAL A 203 CG2 0.135 REMARK 500 CYS A 296 C CYS A 296 O 0.120 REMARK 500 PHE B 59 CZ PHE B 59 CE2 0.136 REMARK 500 GLU B 72 CB GLU B 72 CG 0.128 REMARK 500 GLU B 72 CG GLU B 72 CD 0.093 REMARK 500 ARG B 78 CZ ARG B 78 NH1 0.089 REMARK 500 GLU B 104 CG GLU B 104 CD 0.128 REMARK 500 ASP B 252 CG ASP B 252 OD1 0.167 REMARK 500 GLN B 255 C ASP B 256 N 0.183 REMARK 500 PRO B 257 CD PRO B 257 N 0.084 REMARK 500 LYS B 260 CD LYS B 260 CE 0.221 REMARK 500 GLU B 263 CD GLU B 263 OE1 0.112 REMARK 500 GLU B 263 CD GLU B 263 OE2 0.098 REMARK 500 GLU B 263 C GLU B 263 O 0.221 REMARK 500 ASN B 270 CG ASN B 270 ND2 0.151 REMARK 500 SER B 274 CB SER B 274 OG 0.101 REMARK 500 TYR B 279 C ARG B 280 N 0.141 REMARK 500 PHE B 284 C PHE B 284 O 0.123 REMARK 500 GLU B 292 C GLU B 292 O 0.122 REMARK 500 GLU B 292 C ASP B 293 N 0.149 REMARK 500 CYS B 296 C CYS B 296 O 0.217 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU A 131 CB - CG - CD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 MET A 142 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG A 195 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 VAL A 204 CG1 - CB - CG2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG A 251 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 251 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 269 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 269 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 PHE B 89 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 LYS B 178 CD - CE - NZ ANGL. DEV. = -14.9 DEGREES REMARK 500 GLU B 263 OE1 - CD - OE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 48 139.91 76.11 REMARK 500 ILE A 128 48.20 -145.22 REMARK 500 GLN A 139 20.01 -153.81 REMARK 500 ASP A 179 -63.61 -109.65 REMARK 500 CYS A 180 149.38 -174.76 REMARK 500 ASN A 182 46.69 -96.89 REMARK 500 ASP A 202 -121.41 59.05 REMARK 500 SER A 213 -35.77 78.40 REMARK 500 GLU A 248 -104.83 42.63 REMARK 500 SER A 250 -123.20 -59.17 REMARK 500 ASP A 252 92.12 -66.97 REMARK 500 ASP A 293 37.29 -90.75 REMARK 500 SER A 294 -16.40 111.39 REMARK 500 SER A 295 3.16 -152.83 REMARK 500 HIS B 74 77.53 -109.67 REMARK 500 SER B 95 -4.29 70.99 REMARK 500 ARG B 127 -4.24 62.09 REMARK 500 ILE B 128 52.26 -106.89 REMARK 500 VAL B 138 -60.99 -90.04 REMARK 500 ASP B 164 -65.76 -15.28 REMARK 500 CYS B 180 136.15 -177.63 REMARK 500 ASP B 202 -117.33 69.82 REMARK 500 SER B 213 3.33 44.24 REMARK 500 LYS B 214 70.93 -158.48 REMARK 500 PRO B 232 -16.90 -47.09 REMARK 500 ARG B 247 146.27 79.94 REMARK 500 GLU B 248 -104.45 -87.90 REMARK 500 ASP B 249 49.73 -37.49 REMARK 500 ASP B 252 98.67 -60.01 REMARK 500 ASP B 256 153.02 -49.16 REMARK 500 GLU B 292 103.74 63.51 REMARK 500 ASP B 293 42.21 -155.10 REMARK 500 SER B 294 -119.30 87.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 164 THR B 165 -124.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXR A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXR B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YH3 RELATED DB: PDB REMARK 900 WILDTYPE PROTEIN REMARK 900 RELATED ID: 2O3R RELATED DB: PDB REMARK 900 E226D MUTANT COMPLEXED WITH CADPR REMARK 900 RELATED ID: 2O3S RELATED DB: PDB REMARK 900 E226G MUTANT COMPLEXED WITH CADPR REMARK 900 RELATED ID: 2O3T RELATED DB: PDB REMARK 900 E226Q MUTANT COMPLEXED WITH CGDPR REMARK 900 RELATED ID: 2O3U RELATED DB: PDB REMARK 900 E226Q MUTANT COMPLEXED WITH NGD DBREF 2O3Q A 45 300 UNP P28907 CD38_HUMAN 45 300 DBREF 2O3Q B 45 300 UNP P28907 CD38_HUMAN 45 300 SEQADV 2O3Q LYS A 39 UNP P28907 CLONING ARTIFACT SEQADV 2O3Q ARG A 40 UNP P28907 CLONING ARTIFACT SEQADV 2O3Q GLU A 41 UNP P28907 CLONING ARTIFACT SEQADV 2O3Q ALA A 42 UNP P28907 CLONING ARTIFACT SEQADV 2O3Q GLU A 43 UNP P28907 CLONING ARTIFACT SEQADV 2O3Q ALA A 44 UNP P28907 CLONING ARTIFACT SEQADV 2O3Q THR A 49 UNP P28907 GLN 49 ENGINEERED MUTATION SEQADV 2O3Q ASP A 100 UNP P28907 ASN 100 ENGINEERED MUTATION SEQADV 2O3Q ASP A 164 UNP P28907 ASN 164 ENGINEERED MUTATION SEQADV 2O3Q ASP A 209 UNP P28907 ASN 209 ENGINEERED MUTATION SEQADV 2O3Q ASP A 219 UNP P28907 ASN 219 ENGINEERED MUTATION SEQADV 2O3Q GLN A 226 UNP P28907 GLU 226 ENGINEERED MUTATION SEQADV 2O3Q LYS B 39 UNP P28907 CLONING ARTIFACT SEQADV 2O3Q ARG B 40 UNP P28907 CLONING ARTIFACT SEQADV 2O3Q GLU B 41 UNP P28907 CLONING ARTIFACT SEQADV 2O3Q ALA B 42 UNP P28907 CLONING ARTIFACT SEQADV 2O3Q GLU B 43 UNP P28907 CLONING ARTIFACT SEQADV 2O3Q ALA B 44 UNP P28907 CLONING ARTIFACT SEQADV 2O3Q THR B 49 UNP P28907 GLN 49 ENGINEERED MUTATION SEQADV 2O3Q ASP B 100 UNP P28907 ASN 100 ENGINEERED MUTATION SEQADV 2O3Q ASP B 164 UNP P28907 ASN 164 ENGINEERED MUTATION SEQADV 2O3Q ASP B 209 UNP P28907 ASN 209 ENGINEERED MUTATION SEQADV 2O3Q ASP B 219 UNP P28907 ASN 219 ENGINEERED MUTATION SEQADV 2O3Q GLN B 226 UNP P28907 GLU 226 ENGINEERED MUTATION SEQRES 1 A 262 LYS ARG GLU ALA GLU ALA ARG TRP ARG GLN THR TRP SER SEQRES 2 A 262 GLY PRO GLY THR THR LYS ARG PHE PRO GLU THR VAL LEU SEQRES 3 A 262 ALA ARG CYS VAL LYS TYR THR GLU ILE HIS PRO GLU MET SEQRES 4 A 262 ARG HIS VAL ASP CYS GLN SER VAL TRP ASP ALA PHE LYS SEQRES 5 A 262 GLY ALA PHE ILE SER LYS HIS PRO CYS ASP ILE THR GLU SEQRES 6 A 262 GLU ASP TYR GLN PRO LEU MET LYS LEU GLY THR GLN THR SEQRES 7 A 262 VAL PRO CYS ASN LYS ILE LEU LEU TRP SER ARG ILE LYS SEQRES 8 A 262 ASP LEU ALA HIS GLN PHE THR GLN VAL GLN ARG ASP MET SEQRES 9 A 262 PHE THR LEU GLU ASP THR LEU LEU GLY TYR LEU ALA ASP SEQRES 10 A 262 ASP LEU THR TRP CYS GLY GLU PHE ASP THR SER LYS ILE SEQRES 11 A 262 ASN TYR GLN SER CYS PRO ASP TRP ARG LYS ASP CYS SER SEQRES 12 A 262 ASN ASN PRO VAL SER VAL PHE TRP LYS THR VAL SER ARG SEQRES 13 A 262 ARG PHE ALA GLU ALA ALA CYS ASP VAL VAL HIS VAL MET SEQRES 14 A 262 LEU ASP GLY SER ARG SER LYS ILE PHE ASP LYS ASP SER SEQRES 15 A 262 THR PHE GLY SER VAL GLN VAL HIS ASN LEU GLN PRO GLU SEQRES 16 A 262 LYS VAL GLN THR LEU GLU ALA TRP VAL ILE HIS GLY GLY SEQRES 17 A 262 ARG GLU ASP SER ARG ASP LEU CYS GLN ASP PRO THR ILE SEQRES 18 A 262 LYS GLU LEU GLU SER ILE ILE SER LYS ARG ASN ILE GLN SEQRES 19 A 262 PHE SER CYS LYS ASN ILE TYR ARG PRO ASP LYS PHE LEU SEQRES 20 A 262 GLN CYS VAL LYS ASN PRO GLU ASP SER SER CYS THR SER SEQRES 21 A 262 GLU ILE SEQRES 1 B 262 LYS ARG GLU ALA GLU ALA ARG TRP ARG GLN THR TRP SER SEQRES 2 B 262 GLY PRO GLY THR THR LYS ARG PHE PRO GLU THR VAL LEU SEQRES 3 B 262 ALA ARG CYS VAL LYS TYR THR GLU ILE HIS PRO GLU MET SEQRES 4 B 262 ARG HIS VAL ASP CYS GLN SER VAL TRP ASP ALA PHE LYS SEQRES 5 B 262 GLY ALA PHE ILE SER LYS HIS PRO CYS ASP ILE THR GLU SEQRES 6 B 262 GLU ASP TYR GLN PRO LEU MET LYS LEU GLY THR GLN THR SEQRES 7 B 262 VAL PRO CYS ASN LYS ILE LEU LEU TRP SER ARG ILE LYS SEQRES 8 B 262 ASP LEU ALA HIS GLN PHE THR GLN VAL GLN ARG ASP MET SEQRES 9 B 262 PHE THR LEU GLU ASP THR LEU LEU GLY TYR LEU ALA ASP SEQRES 10 B 262 ASP LEU THR TRP CYS GLY GLU PHE ASP THR SER LYS ILE SEQRES 11 B 262 ASN TYR GLN SER CYS PRO ASP TRP ARG LYS ASP CYS SER SEQRES 12 B 262 ASN ASN PRO VAL SER VAL PHE TRP LYS THR VAL SER ARG SEQRES 13 B 262 ARG PHE ALA GLU ALA ALA CYS ASP VAL VAL HIS VAL MET SEQRES 14 B 262 LEU ASP GLY SER ARG SER LYS ILE PHE ASP LYS ASP SER SEQRES 15 B 262 THR PHE GLY SER VAL GLN VAL HIS ASN LEU GLN PRO GLU SEQRES 16 B 262 LYS VAL GLN THR LEU GLU ALA TRP VAL ILE HIS GLY GLY SEQRES 17 B 262 ARG GLU ASP SER ARG ASP LEU CYS GLN ASP PRO THR ILE SEQRES 18 B 262 LYS GLU LEU GLU SER ILE ILE SER LYS ARG ASN ILE GLN SEQRES 19 B 262 PHE SER CYS LYS ASN ILE TYR ARG PRO ASP LYS PHE LEU SEQRES 20 B 262 GLN CYS VAL LYS ASN PRO GLU ASP SER SER CYS THR SER SEQRES 21 B 262 GLU ILE HET CXR A 301 35 HET CXR B 301 35 HETNAM CXR CYCLIC ADENOSINE DIPHOSPHATE-RIBOSE HETSYN CXR CYCLIC ADP-RIBOSE FORMUL 3 CXR 2(C15 H21 N5 O13 P2) FORMUL 5 HOH *291(H2 O) HELIX 1 1 ARG A 58 HIS A 74 1 17 HELIX 2 2 PRO A 75 ARG A 78 5 4 HELIX 3 3 ASP A 81 ILE A 94 1 14 HELIX 4 4 THR A 102 GLY A 113 1 12 HELIX 5 5 ILE A 128 GLN A 139 1 12 HELIX 6 6 THR A 144 ASP A 147 5 4 HELIX 7 7 THR A 148 ASP A 155 1 8 HELIX 8 8 ASN A 183 ALA A 200 1 18 HELIX 9 9 SER A 220 VAL A 225 1 6 HELIX 10 10 VAL A 225 LEU A 230 1 6 HELIX 11 11 ASP A 252 GLN A 255 5 4 HELIX 12 12 ASP A 256 LYS A 268 1 13 HELIX 13 13 ARG A 280 ASN A 290 1 11 HELIX 14 14 ARG B 58 HIS B 74 1 17 HELIX 15 15 PRO B 75 ARG B 78 5 4 HELIX 16 16 ASP B 81 ILE B 94 1 14 HELIX 17 17 GLU B 103 ASP B 105 5 3 HELIX 18 18 TYR B 106 GLY B 113 1 8 HELIX 19 19 ILE B 128 GLN B 139 1 12 HELIX 20 20 THR B 144 ASP B 147 5 4 HELIX 21 21 THR B 148 ASP B 155 1 8 HELIX 22 22 ASN B 183 ALA B 200 1 18 HELIX 23 23 SER B 220 LEU B 230 1 11 HELIX 24 24 ASP B 252 GLN B 255 5 4 HELIX 25 25 ASP B 256 ARG B 269 1 14 HELIX 26 26 ARG B 280 ASN B 290 1 11 SHEET 1 A 4 LEU A 123 SER A 126 0 SHEET 2 A 4 ASP A 202 ASP A 209 1 O HIS A 205 N LEU A 124 SHEET 3 A 4 VAL A 235 ILE A 243 1 O TRP A 241 N LEU A 208 SHEET 4 A 4 GLN A 272 ILE A 278 1 O SER A 274 N ALA A 240 SHEET 1 B 2 GLY B 52 PRO B 53 0 SHEET 2 B 2 SER B 172 CYS B 173 -1 O CYS B 173 N GLY B 52 SHEET 1 C 4 LEU B 123 SER B 126 0 SHEET 2 C 4 ASP B 202 ASP B 209 1 O HIS B 205 N LEU B 124 SHEET 3 C 4 VAL B 235 ILE B 243 1 O GLU B 239 N VAL B 204 SHEET 4 C 4 GLN B 272 ILE B 278 1 O LYS B 276 N VAL B 242 SSBOND 1 CYS A 67 CYS A 82 1555 1555 2.22 SSBOND 2 CYS A 99 CYS A 180 1555 1555 2.15 SSBOND 3 CYS A 119 CYS A 201 1555 1555 2.13 SSBOND 4 CYS A 160 CYS A 173 1555 1555 2.17 SSBOND 5 CYS A 254 CYS A 275 1555 1555 2.14 SSBOND 6 CYS A 287 CYS A 296 1555 1555 2.05 SSBOND 7 CYS B 67 CYS B 82 1555 1555 2.21 SSBOND 8 CYS B 99 CYS B 180 1555 1555 2.08 SSBOND 9 CYS B 119 CYS B 201 1555 1555 2.07 SSBOND 10 CYS B 160 CYS B 173 1555 1555 2.17 SSBOND 11 CYS B 254 CYS B 275 1555 1555 2.06 SSBOND 12 CYS B 287 CYS B 296 1555 1555 2.11 SITE 1 AC1 14 TRP A 125 ARG A 127 LYS A 129 GLU A 146 SITE 2 AC1 14 ASP A 155 ASP A 156 VAL A 185 TRP A 189 SITE 3 AC1 14 THR A 221 HOH A 309 HOH A 322 HOH A 336 SITE 4 AC1 14 HOH A 352 HOH A 416 SITE 1 AC2 9 TRP B 125 LYS B 129 GLU B 146 ASP B 155 SITE 2 AC2 9 ASP B 156 VAL B 185 TRP B 189 THR B 221 SITE 3 AC2 9 HOH B 396 CRYST1 41.937 53.280 65.919 105.89 92.10 94.81 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023845 0.002007 0.001491 0.00000 SCALE2 0.000000 0.018835 0.005452 0.00000 SCALE3 0.000000 0.000000 0.015803 0.00000