HEADER RNA 03-DEC-06 2O44 TITLE STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS TITLE 2 RADIODURANS IN COMPLEX WITH THE MACROLIDE JOSAMYCIN CAVEAT 2O44 CHIRALITY ERROR AT C1' CENTER OF C 541 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 23S RRNA; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299 KEYWDS RIBOSOME, MACROLIDES, RNA EXPDTA X-RAY DIFFRACTION AUTHOR E.PYETAN,D.DARAM,T.AUERBACH-NEVO,A.YONATH REVDAT 4 30-AUG-23 2O44 1 REMARK REVDAT 3 28-DEC-11 2O44 1 CAVEAT VERSN REVDAT 2 24-FEB-09 2O44 1 VERSN REVDAT 1 04-DEC-07 2O44 0 JRNL AUTH E.PYETAN,D.BARAM,T.AUERBACH-NEVO,A.YONATH JRNL TITL CHEMICAL PARAMETERS INFLUENCING FINE TUNING IN THE BINDING JRNL TITL 2 OF MACROLIDE ANTIBIOTICS TO THE RIBOSOMAL TUNNEL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 345218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : 0.331 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 59359 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2O44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; ESRF REMARK 200 BEAMLINE : 19-ID; ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL; NULL REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 345218 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.18400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1NKW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 86.40100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 205.73750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 348.80800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 86.40100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 205.73750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 348.80800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 86.40100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 205.73750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 348.80800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 86.40100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 205.73750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 348.80800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS REMARK 300 AND THE MACROLIDE JOSAMYCIN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 A A 249 REMARK 465 C A 250 REMARK 465 C A 251 REMARK 465 G A 252 REMARK 465 A A 253 REMARK 465 A A 254 REMARK 465 A A 255 REMARK 465 C A 256 REMARK 465 G A 257 REMARK 465 C A 258 REMARK 465 U A 259 REMARK 465 U A 260 REMARK 465 G A 261 REMARK 465 C A 262 REMARK 465 G A 263 REMARK 465 U A 264 REMARK 465 U A 265 REMARK 465 U A 266 REMARK 465 C A 267 REMARK 465 G A 268 REMARK 465 G A 269 REMARK 465 G A 270 REMARK 465 G A 271 REMARK 465 U A 272 REMARK 465 U A 273 REMARK 465 G A 274 REMARK 465 U A 275 REMARK 465 A A 276 REMARK 465 G A 277 REMARK 465 G A 278 REMARK 465 A A 279 REMARK 465 C A 280 REMARK 465 C A 281 REMARK 465 A A 282 REMARK 465 G A 283 REMARK 465 U A 284 REMARK 465 U A 285 REMARK 465 U A 286 REMARK 465 U A 287 REMARK 465 U A 288 REMARK 465 A A 289 REMARK 465 A A 290 REMARK 465 G A 291 REMARK 465 C A 374 REMARK 465 U A 375 REMARK 465 G A 376 REMARK 465 G A 377 REMARK 465 C A 378 REMARK 465 A A 379 REMARK 465 C A 380 REMARK 465 C A 381 REMARK 465 U A 382 REMARK 465 G A 383 REMARK 465 A A 384 REMARK 465 G A 385 REMARK 465 U A 386 REMARK 465 G A 892 REMARK 465 G A 893 REMARK 465 G A 894 REMARK 465 G A 895 REMARK 465 G A 896 REMARK 465 C A 897 REMARK 465 C A 898 REMARK 465 U A 899 REMARK 465 A A 900 REMARK 465 C A 901 REMARK 465 C A 902 REMARK 465 A A 903 REMARK 465 G A 904 REMARK 465 C A 905 REMARK 465 U A 906 REMARK 465 U A 907 REMARK 465 A A 908 REMARK 465 C A 909 REMARK 465 C A 910 REMARK 465 G A 2098 REMARK 465 G A 2099 REMARK 465 A A 2100 REMARK 465 U A 2101 REMARK 465 A A 2102 REMARK 465 C A 2111 REMARK 465 C A 2112 REMARK 465 U A 2113 REMARK 465 G A 2114 REMARK 465 C A 2115 REMARK 465 G A 2116 REMARK 465 U A 2126 REMARK 465 U A 2127 REMARK 465 U A 2128 REMARK 465 U A 2129 REMARK 465 G A 2130 REMARK 465 G A 2131 REMARK 465 A A 2141 REMARK 465 G A 2142 REMARK 465 G A 2143 REMARK 465 C A 2144 REMARK 465 A A 2145 REMARK 465 A A 2146 REMARK 465 C A 2147 REMARK 465 G A 2148 REMARK 465 G A 2149 REMARK 465 U A 2150 REMARK 465 G A 2151 REMARK 465 A A 2152 REMARK 465 A A 2153 REMARK 465 A A 2154 REMARK 465 U A 2155 REMARK 465 A A 2156 REMARK 465 U A 2775 REMARK 465 U A 2776 REMARK 465 A A 2777 REMARK 465 C A 2878 REMARK 465 U A 2879 REMARK 465 C A 2880 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N6 A A 2045 C21 JOS A 2881 1.67 REMARK 500 O4 U A 1459 O5' G A 1476 2.02 REMARK 500 O2' U A 1301 N2 G A 1664 2.07 REMARK 500 O2' A A 1355 OP2 U A 1357 2.09 REMARK 500 O2' C A 104 O2' A A 305 2.11 REMARK 500 O2' C A 541 N2 G A 2018 2.11 REMARK 500 O2' A A 1624 OP2 A A 1626 2.11 REMARK 500 OP2 U A 1469 OP2 G A 1471 2.12 REMARK 500 O2' U A 571 O4' A A 581 2.17 REMARK 500 OP1 U A 839 OP2 G A 2408 2.17 REMARK 500 O2' G A 1337 N6 A A 1632 2.17 REMARK 500 N3 A A 320 O2' G A 340 2.18 REMARK 500 N1 G A 2665 O2 U A 2704 2.19 REMARK 500 N4 C A 1328 O6 G A 1350 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 528 C5 G A 528 C6 -0.062 REMARK 500 C A1711 N1 C A1711 C2 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 182 N9 - C1' - C2' ANGL. DEV. = -7.8 DEGREES REMARK 500 G A 219 N9 - C1' - C2' ANGL. DEV. = 12.0 DEGREES REMARK 500 G A 334 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 G A 340 N9 - C1' - C2' ANGL. DEV. = 7.9 DEGREES REMARK 500 G A 424 N9 - C1' - C2' ANGL. DEV. = 9.0 DEGREES REMARK 500 A A 459 N9 - C1' - C2' ANGL. DEV. = 8.5 DEGREES REMARK 500 G A 469 N9 - C1' - C2' ANGL. DEV. = 11.9 DEGREES REMARK 500 C A 559 N1 - C1' - C2' ANGL. DEV. = -7.0 DEGREES REMARK 500 U A 571 N1 - C1' - C2' ANGL. DEV. = 8.9 DEGREES REMARK 500 A A 580 N9 - C1' - C2' ANGL. DEV. = 9.4 DEGREES REMARK 500 G A 699 N9 - C1' - C2' ANGL. DEV. = 9.2 DEGREES REMARK 500 G A 741 N9 - C1' - C2' ANGL. DEV. = 8.8 DEGREES REMARK 500 G A 752 N9 - C1' - C2' ANGL. DEV. = 9.4 DEGREES REMARK 500 A A 796 N9 - C1' - C2' ANGL. DEV. = -8.3 DEGREES REMARK 500 G A 814 N9 - C1' - C2' ANGL. DEV. = 9.7 DEGREES REMARK 500 G A 841 N9 - C1' - C2' ANGL. DEV. = 12.0 DEGREES REMARK 500 C A 968 N1 - C1' - C2' ANGL. DEV. = 7.9 DEGREES REMARK 500 G A 985 N9 - C1' - C2' ANGL. DEV. = 8.7 DEGREES REMARK 500 G A1000 N9 - C1' - C2' ANGL. DEV. = 8.5 DEGREES REMARK 500 C A1031 N1 - C1' - C2' ANGL. DEV. = 8.9 DEGREES REMARK 500 G A1036 N9 - C1' - C2' ANGL. DEV. = 10.2 DEGREES REMARK 500 G A1142 N9 - C1' - C2' ANGL. DEV. = 10.6 DEGREES REMARK 500 G A1189 N9 - C1' - C2' ANGL. DEV. = -6.8 DEGREES REMARK 500 G A1266 C1' - O4' - C4' ANGL. DEV. = -4.5 DEGREES REMARK 500 G A1266 N9 - C1' - C2' ANGL. DEV. = 9.2 DEGREES REMARK 500 G A1266 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 G A1279 N9 - C1' - C2' ANGL. DEV. = 10.0 DEGREES REMARK 500 A A1288 N9 - C1' - C2' ANGL. DEV. = 10.2 DEGREES REMARK 500 G A1337 N9 - C1' - C2' ANGL. DEV. = 9.8 DEGREES REMARK 500 G A1338 C1' - O4' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 G A1338 N9 - C1' - C2' ANGL. DEV. = 10.6 DEGREES REMARK 500 G A1338 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES REMARK 500 U A1342 N1 - C1' - C2' ANGL. DEV. = 8.5 DEGREES REMARK 500 U A1434 N1 - C1' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 U A1459 N1 - C1' - C2' ANGL. DEV. = 10.1 DEGREES REMARK 500 A A1474 N9 - C1' - C2' ANGL. DEV. = 10.8 DEGREES REMARK 500 C A1631 N1 - C1' - C2' ANGL. DEV. = 8.4 DEGREES REMARK 500 G A1664 N9 - C1' - C2' ANGL. DEV. = 8.3 DEGREES REMARK 500 A A1715 N9 - C1' - C2' ANGL. DEV. = 10.4 DEGREES REMARK 500 U A1723 N1 - C1' - C2' ANGL. DEV. = 10.7 DEGREES REMARK 500 G A1749 N9 - C1' - C2' ANGL. DEV. = 7.8 DEGREES REMARK 500 A A1771 N9 - C1' - C2' ANGL. DEV. = 10.3 DEGREES REMARK 500 C A1772 N1 - C1' - C2' ANGL. DEV. = 9.2 DEGREES REMARK 500 A A1811 N9 - C1' - C2' ANGL. DEV. = 8.8 DEGREES REMARK 500 G A1975 C2' - C3' - O3' ANGL. DEV. = 9.7 DEGREES REMARK 500 G A1975 N9 - C1' - C2' ANGL. DEV. = 11.5 DEGREES REMARK 500 A A2014 N9 - C1' - C2' ANGL. DEV. = 9.8 DEGREES REMARK 500 A A2034 N9 - C1' - C2' ANGL. DEV. = 9.9 DEGREES REMARK 500 G A2044 N9 - C1' - C2' ANGL. DEV. = 15.1 DEGREES REMARK 500 G A2044 C3' - O3' - P ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 69 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 U A 49 0.07 SIDE CHAIN REMARK 500 G A 54 0.06 SIDE CHAIN REMARK 500 G A 59 0.07 SIDE CHAIN REMARK 500 U A 86 0.07 SIDE CHAIN REMARK 500 U A 154 0.10 SIDE CHAIN REMARK 500 G A 165 0.08 SIDE CHAIN REMARK 500 A A 167 0.06 SIDE CHAIN REMARK 500 A A 172 0.05 SIDE CHAIN REMARK 500 A A 181 0.08 SIDE CHAIN REMARK 500 G A 182 0.07 SIDE CHAIN REMARK 500 G A 192 0.06 SIDE CHAIN REMARK 500 G A 219 0.09 SIDE CHAIN REMARK 500 G A 222 0.08 SIDE CHAIN REMARK 500 G A 225 0.07 SIDE CHAIN REMARK 500 A A 228 0.10 SIDE CHAIN REMARK 500 U A 317 0.08 SIDE CHAIN REMARK 500 G A 334 0.05 SIDE CHAIN REMARK 500 A A 341 0.05 SIDE CHAIN REMARK 500 A A 343 0.05 SIDE CHAIN REMARK 500 C A 398 0.07 SIDE CHAIN REMARK 500 U A 412 0.08 SIDE CHAIN REMARK 500 A A 466 0.07 SIDE CHAIN REMARK 500 G A 469 0.07 SIDE CHAIN REMARK 500 U A 470 0.06 SIDE CHAIN REMARK 500 U A 486 0.08 SIDE CHAIN REMARK 500 G A 492 0.05 SIDE CHAIN REMARK 500 G A 500 0.07 SIDE CHAIN REMARK 500 U A 509 0.12 SIDE CHAIN REMARK 500 C A 520 0.09 SIDE CHAIN REMARK 500 C A 537 0.09 SIDE CHAIN REMARK 500 C A 541 0.10 SIDE CHAIN REMARK 500 C A 559 0.10 SIDE CHAIN REMARK 500 U A 571 0.06 SIDE CHAIN REMARK 500 G A 572 0.05 SIDE CHAIN REMARK 500 C A 574 0.08 SIDE CHAIN REMARK 500 U A 575 0.09 SIDE CHAIN REMARK 500 C A 596 0.10 SIDE CHAIN REMARK 500 G A 600 0.06 SIDE CHAIN REMARK 500 G A 605 0.05 SIDE CHAIN REMARK 500 U A 617 0.07 SIDE CHAIN REMARK 500 A A 632 0.06 SIDE CHAIN REMARK 500 U A 670 0.06 SIDE CHAIN REMARK 500 A A 683 0.10 SIDE CHAIN REMARK 500 U A 685 0.06 SIDE CHAIN REMARK 500 G A 704 0.07 SIDE CHAIN REMARK 500 A A 743 0.06 SIDE CHAIN REMARK 500 G A 746 0.09 SIDE CHAIN REMARK 500 A A 748 0.10 SIDE CHAIN REMARK 500 G A 752 0.05 SIDE CHAIN REMARK 500 U A 757 0.07 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 200 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JOS A 2881 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O43 RELATED DB: PDB REMARK 900 RELATED ID: 2O45 RELATED DB: PDB DBREF 2O44 A 1 2880 PDB 2O44 2O44 1 2880 SEQRES 1 A 2880 G G U C A A G A U A G U A SEQRES 2 A 2880 A G G G U C C A C G G U G SEQRES 3 A 2880 G A U G C C C U G G C G C SEQRES 4 A 2880 U G G A G C C G A U G A A SEQRES 5 A 2880 G G A C G C G A U U A C C SEQRES 6 A 2880 U G C G A A A A G C C C C SEQRES 7 A 2880 G A C G A G C U G G A G A SEQRES 8 A 2880 U A C G C U U U G A C U C SEQRES 9 A 2880 G G G G A U G U C C G A A SEQRES 10 A 2880 U G G G G A A A C C C A C SEQRES 11 A 2880 C U C G U A A G A G G U A SEQRES 12 A 2880 U C C G C A A G G A U G G SEQRES 13 A 2880 G A A C U C A G G G A A C SEQRES 14 A 2880 U G A A A C A U C U C A G SEQRES 15 A 2880 U A C C U G A A G G A G A SEQRES 16 A 2880 A G A A A G A G A A U U C SEQRES 17 A 2880 G A U U C C G U U A G U A SEQRES 18 A 2880 G C G G C G A G C G A A C SEQRES 19 A 2880 C C G G A U C A G C C C A SEQRES 20 A 2880 A A C C G A A A C G C U U SEQRES 21 A 2880 G C G U U U C G G G G U U SEQRES 22 A 2880 G U A G G A C C A G U U U SEQRES 23 A 2880 U U A A G A U U C A A C C SEQRES 24 A 2880 C C U C A A G C C G A A G SEQRES 25 A 2880 U G G C U G G A A A G C U SEQRES 26 A 2880 A C A C C U C A G A A G G SEQRES 27 A 2880 U G A G A G U C C U G U A SEQRES 28 A 2880 G G C G A A C G A G C G G SEQRES 29 A 2880 U U G A C U G U A C U G G SEQRES 30 A 2880 C A C C U G A G U A G G U SEQRES 31 A 2880 C G U U G U U C G U G A A SEQRES 32 A 2880 A C G A U G A C U G A A U SEQRES 33 A 2880 C C G C G C G G A C C A C SEQRES 34 A 2880 C G C G C A A G G C U A A SEQRES 35 A 2880 A U A C U C C C A G U G A SEQRES 36 A 2880 C C G A U A G C G C A U A SEQRES 37 A 2880 G U A C C G U G A G G G A SEQRES 38 A 2880 A A G G U G A A A A G A A SEQRES 39 A 2880 C C C C G G G A G G G G A SEQRES 40 A 2880 G U G A A A G A G A A C C SEQRES 41 A 2880 U G A A A C C G U G G A C SEQRES 42 A 2880 U U A C A A G C A G U C A SEQRES 43 A 2880 U G G C A C C U U A U G C SEQRES 44 A 2880 G U G U U A U G G C G U G SEQRES 45 A 2880 C C U A U U G A A G C A U SEQRES 46 A 2880 G A G C C G G C G A C U U SEQRES 47 A 2880 A G A C C U G A C G U G C SEQRES 48 A 2880 G A G C U U A A G U U G A SEQRES 49 A 2880 A A A A C G G A G G C G G SEQRES 50 A 2880 A G C G A A A G C G A G U SEQRES 51 A 2880 C C G A A U A G G G C G G SEQRES 52 A 2880 C A U U A G U A C G U C G SEQRES 53 A 2880 G G C U A G A C U C G A A SEQRES 54 A 2880 A C C A G G U G A G C U A SEQRES 55 A 2880 A G C A U G A C C A G G U SEQRES 56 A 2880 U G A A A C C C C C G U G SEQRES 57 A 2880 A C A G G G G G C G G A G SEQRES 58 A 2880 G A C C G A A C C G G U G SEQRES 59 A 2880 C C U G C U G A A A C A G SEQRES 60 A 2880 U C U C G G A U G A G U U SEQRES 61 A 2880 G U G U U U A G G A G U G SEQRES 62 A 2880 A A A A G C U A A C C G A SEQRES 63 A 2880 A C C U G G A G A U A G C SEQRES 64 A 2880 U A G U U C U C C C C G A SEQRES 65 A 2880 A A U G U A U U G A G G U SEQRES 66 A 2880 A C A G C C U C G G A U G SEQRES 67 A 2880 U U G A C C A U G U C C U SEQRES 68 A 2880 G U A G A G C A C U C A C SEQRES 69 A 2880 A A G G C U A G G G G G C SEQRES 70 A 2880 C U A C C A G C U U A C C SEQRES 71 A 2880 A A A C C U U A U G A A A SEQRES 72 A 2880 C U C C G A A G G G G C A SEQRES 73 A 2880 C G C G U U U A G U C C G SEQRES 74 A 2880 G G A G U G A G G C U G C SEQRES 75 A 2880 G A G A G C U A A C U U C SEQRES 76 A 2880 C G U A G C C G A G A G G SEQRES 77 A 2880 G A A A C A A C C C A G A SEQRES 78 A 2880 C C A U C A G C U A A G G SEQRES 79 A 2880 U C C C U A A A U G A U C SEQRES 80 A 2880 G C U C A G U G G U U A A SEQRES 81 A 2880 G G A U G U G U C G U C G SEQRES 82 A 2880 C A U A G A C A G C C A G SEQRES 83 A 2880 G A G G U U G G C U U A G SEQRES 84 A 2880 A A G C A G C C A C C C U SEQRES 85 A 2880 U C A A A G A G U G C G U SEQRES 86 A 2880 A A U A G C U C A C U G G SEQRES 87 A 2880 U C G A G U G A C G A U G SEQRES 88 A 2880 C G C C G A A A A U G A U SEQRES 89 A 2880 C G G G G C U C A A G U G SEQRES 90 A 2880 A U C U A C C G A A G C U SEQRES 91 A 2880 A U G G A U U C A A C U C SEQRES 92 A 2880 G C G A A G C G A G U U G SEQRES 93 A 2880 U C U G G U A G G G G A G SEQRES 94 A 2880 C G U U C A G U C C G C G SEQRES 95 A 2880 G A G A A G C C A U A C C SEQRES 96 A 2880 G G A A G G A G U G G U G SEQRES 97 A 2880 G A G C C G A C U G A A G SEQRES 98 A 2880 U G C G G A U G C C G G C SEQRES 99 A 2880 A U G A G U A A C G A U A SEQRES 100 A 2880 A A A G A A G U G A G A A SEQRES 101 A 2880 U C U U C U U C G C C G U SEQRES 102 A 2880 A A G G A C A A G G G U U SEQRES 103 A 2880 C C U G G G G A A G G G U SEQRES 104 A 2880 C G U C C G C C C A G G G SEQRES 105 A 2880 A A A G U C G G G A C C U SEQRES 106 A 2880 A A G G U G A G G C C G A SEQRES 107 A 2880 A C G G C G C A G C C G A SEQRES 108 A 2880 U G G A C A G C A G G U C SEQRES 109 A 2880 A A G A U U C C U G C A C SEQRES 110 A 2880 C G A U C A U G U G G A G SEQRES 111 A 2880 U G A U G G A G G G A C G SEQRES 112 A 2880 C A U U A C G C U A U C C SEQRES 113 A 2880 A A U G C C A A G C U A U SEQRES 114 A 2880 G G C U A U G C U G G U U SEQRES 115 A 2880 G G U A C G C U C A A G G SEQRES 116 A 2880 G C G A U C G G G U C A G SEQRES 117 A 2880 A A A A U C U A C C G G U SEQRES 118 A 2880 C A C A U G C C U C A G A SEQRES 119 A 2880 C G U A U C G G G A G C U SEQRES 120 A 2880 U C C U C G G A A G C G A SEQRES 121 A 2880 A G U U G G A A A C G C G SEQRES 122 A 2880 A C G G U G C C A A G A A SEQRES 123 A 2880 A A G C U U C U A A A C G SEQRES 124 A 2880 U U G A A A C A U G A U U SEQRES 125 A 2880 G C C C G U A C C G C A A SEQRES 126 A 2880 A C C G A C A C A G G U G SEQRES 127 A 2880 U C C G A G U G U C A A U SEQRES 128 A 2880 G C A C U A A G G C G C G SEQRES 129 A 2880 C G A G A G A A C C C U C SEQRES 130 A 2880 G U U A A G G A A C U U U SEQRES 131 A 2880 G C A A U C U C A C C C C SEQRES 132 A 2880 G U A A C U U C G G A A G SEQRES 133 A 2880 A A G G G G U C C C C A C SEQRES 134 A 2880 G C U U C G C G U G G G G SEQRES 135 A 2880 C G C A G U G A A U A G G SEQRES 136 A 2880 C C C A G G C G A C U G U SEQRES 137 A 2880 U U A C C A A A A U C A C SEQRES 138 A 2880 A G C A C U C U G C C A A SEQRES 139 A 2880 C A C G A A C A G U G G A SEQRES 140 A 2880 C G U A U A G G G U G U G SEQRES 141 A 2880 A C G C C U G C C C G G U SEQRES 142 A 2880 G C C G G A A G G U C A A SEQRES 143 A 2880 G U G G A G C G G U G C A SEQRES 144 A 2880 A G C U G C G A A A U G A SEQRES 145 A 2880 A G C C C C G G U G A A C SEQRES 146 A 2880 G G C G G C C G U A A C U SEQRES 147 A 2880 A U A A C G G U C C U A A SEQRES 148 A 2880 G G U A G C G A A A U U C SEQRES 149 A 2880 C U U G U C G G G U A A G SEQRES 150 A 2880 U U C C G A C C U G C A C SEQRES 151 A 2880 G A A A G G C G U A A C G SEQRES 152 A 2880 A U C U G G G C G C U G U SEQRES 153 A 2880 C U C A A C G A G G G A C SEQRES 154 A 2880 U C G G U G A A A U U G A SEQRES 155 A 2880 A U U G G C U G U A A A G SEQRES 156 A 2880 A U G C G G C C U A C C C SEQRES 157 A 2880 G U A G C A G G A C G A A SEQRES 158 A 2880 A A G A C C C C G U G G A SEQRES 159 A 2880 G C U U U A C U A U A G U SEQRES 160 A 2880 C U G G C A U U G G G A U SEQRES 161 A 2880 U C G G G U U U C U C U G SEQRES 162 A 2880 C G U A G G A U A G G U G SEQRES 163 A 2880 G G A G C C U G C G A A A SEQRES 164 A 2880 C U G G C C U U U U G G G SEQRES 165 A 2880 G U C G G U G G A G G C A SEQRES 166 A 2880 A C G G U G A A A U A C C SEQRES 167 A 2880 A C C C U G A G A A A C U SEQRES 168 A 2880 U G G A U U U C U A A C C SEQRES 169 A 2880 U G A A A A A U C A C U U SEQRES 170 A 2880 U C G G G G A C C G U G C SEQRES 171 A 2880 U U G G C G G G U A G U U SEQRES 172 A 2880 U G A C U G G G G C G G U SEQRES 173 A 2880 C G C C U C C C A A A A U SEQRES 174 A 2880 G U A A C G G A G G C G C SEQRES 175 A 2880 C C A A A G G U C A C C U SEQRES 176 A 2880 C A A G A C G G U U G G A SEQRES 177 A 2880 A A U C G U C U G U A G A SEQRES 178 A 2880 G C G C A A A G G U A G A SEQRES 179 A 2880 A G G U G G C U U G A C U SEQRES 180 A 2880 G C G A G A C U G A C A C SEQRES 181 A 2880 G U C G A G C A G G G A G SEQRES 182 A 2880 G A A A C U C G G G C U U SEQRES 183 A 2880 A G U G A A C C G G U G G SEQRES 184 A 2880 U A C C G U G U G G A A G SEQRES 185 A 2880 G G C C A U C G A U C A A SEQRES 186 A 2880 C G G A U A A A A G U U A SEQRES 187 A 2880 C C C C G G G G A U A A C SEQRES 188 A 2880 A G G C U G A U C U C C C SEQRES 189 A 2880 C C G A G A G U C C A U A SEQRES 190 A 2880 U C G G C G G G G A G G U SEQRES 191 A 2880 U U G G C A C C U C G A U SEQRES 192 A 2880 G U C G G C U C G U C G C SEQRES 193 A 2880 A U C C U G G G G C U G A SEQRES 194 A 2880 A G A A G G U C C C A A G SEQRES 195 A 2880 G G U U G G G C U G U U C SEQRES 196 A 2880 G C C C A U U A A A G C G SEQRES 197 A 2880 G C A C G C G A G C U G G SEQRES 198 A 2880 G U U C A G A A C G U C G SEQRES 199 A 2880 U G A G A C A G U U C G G SEQRES 200 A 2880 U C U C U A U C C G C U A SEQRES 201 A 2880 C G G G C G C A G G A G A SEQRES 202 A 2880 A U U G A G G G G A G U U SEQRES 203 A 2880 G C U C C U A G U A C G A SEQRES 204 A 2880 G A G G A C C G G A G U G SEQRES 205 A 2880 A A C G G A C C G C U G G SEQRES 206 A 2880 U C U C C C U G C U G U C SEQRES 207 A 2880 G U A C C A A C G G C A C SEQRES 208 A 2880 A U G C A G G G U A G C U SEQRES 209 A 2880 A U G U C C G G A A C G G SEQRES 210 A 2880 A U A A C C G C U G A A A SEQRES 211 A 2880 G C A U C U A A G C G G G SEQRES 212 A 2880 A A G C C A G C C C C A A SEQRES 213 A 2880 G A U G A G U U C U C C C SEQRES 214 A 2880 A C U G U U U A U C A G G SEQRES 215 A 2880 U A A G A C U C C C G G A SEQRES 216 A 2880 A G A C C A C C G G G U U SEQRES 217 A 2880 A A G A G G C C A G G C G SEQRES 218 A 2880 U G C A C G C A U A G C A SEQRES 219 A 2880 A U G U G U U C A G C G G SEQRES 220 A 2880 A C U G G U G C U C A U C SEQRES 221 A 2880 A G U C G A G G U C U U G SEQRES 222 A 2880 A C C A C U C HET JOS A2881 58 HETNAM JOS (2S,3S,4R,6S)-6-{[(2R,3S,4R,5R,6S)-6-{[(4R,5S,6S,7R,9R, HETNAM 2 JOS 10S,12E,14Z,16R)-4-(ACETYLOXY)-10-HYDROXY-5-METHOXY-9, HETNAM 3 JOS 16-DIMETHYL-2-OXO-7-(2-OXOETHYL)OXACYCLOHEXADECA-12, HETNAM 4 JOS 14-DIEN-6-YL]OXY}-4-(DIMETHYLAMINO)-5-HYDROXY-2- HETNAM 5 JOS METHYLTETRAHYDRO-2H-PYRAN-3-YL]OXY}-4-HYDROXY-2,4- HETNAM 6 JOS DIMETHYLTETRAHYDRO-2H-PYRAN-3-YL 3-METHYLBUTANOATE HETSYN JOS JOSAMYCIN FORMUL 2 JOS C42 H69 N O15 SITE 1 AC1 12 C A 759 A A2041 A A2042 G A2044 SITE 2 AC1 12 A A2045 A A2430 C A2431 A A2482 SITE 3 AC1 12 G A2484 U A2485 U A2588 U A2590 CRYST1 172.802 411.475 697.616 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005787 0.000000 0.000000 0.00000 SCALE2 0.000000 0.002430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001433 0.00000