HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-DEC-06 2O55 TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLYCEROPHOSPHODIESTER TITLE 2 PHOSPHODIESTERASE FROM GALDIERIA SULPHURARIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALDIERIA SULPHURARIA; SOURCE 3 ORGANISM_TAXID: 130081; SOURCE 4 GENE: C454_101305G29.T1 (MSU_GALDI); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PVP 16 KEYWDS BETA BARREL, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 2 2, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.G.MCCOY,G.E.WESENBERG,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN,CENTER AUTHOR 2 FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 27-DEC-23 2O55 1 REMARK LINK REVDAT 4 18-OCT-17 2O55 1 REMARK REVDAT 3 13-JUL-11 2O55 1 VERSN REVDAT 2 24-FEB-09 2O55 1 VERSN REVDAT 1 19-DEC-06 2O55 0 JRNL AUTH J.G.MCCOY,G.E.WESENBERG,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE GLYCEROPHOSPHODIESTER JRNL TITL 2 PHOSPHODIESTERASE FROM GALDIERIA SULPHURARIA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 7678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.585 REMARK 3 FREE R VALUE TEST SET COUNT : 352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 443 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.4910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.50600 REMARK 3 B22 (A**2) : 1.50600 REMARK 3 B33 (A**2) : -2.25800 REMARK 3 B12 (A**2) : 0.75300 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.000 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.389 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.300 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.913 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2115 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2862 ; 1.486 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 255 ; 8.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;41.546 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 380 ;20.807 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.714 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 310 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1582 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1008 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1405 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 64 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.235 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 0.460 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2045 ; 0.844 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 925 ; 1.363 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 816 ; 2.251 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5396 11.0570 12.9083 REMARK 3 T TENSOR REMARK 3 T11: 0.2844 T22: 0.2444 REMARK 3 T33: 0.2829 T12: 0.0250 REMARK 3 T13: -0.0331 T23: 0.1372 REMARK 3 L TENSOR REMARK 3 L11: 3.4788 L22: 2.1581 REMARK 3 L33: 4.1076 L12: 0.6737 REMARK 3 L13: -1.4498 L23: 0.6748 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: -0.5065 S13: -0.1336 REMARK 3 S21: -0.1433 S22: 0.1254 S23: 0.3823 REMARK 3 S31: 0.4031 S32: 0.0794 S33: -0.1033 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9342 27.6854 13.6082 REMARK 3 T TENSOR REMARK 3 T11: 0.2291 T22: 0.2366 REMARK 3 T33: 0.4262 T12: 0.1812 REMARK 3 T13: -0.0385 T23: 0.1290 REMARK 3 L TENSOR REMARK 3 L11: 12.9861 L22: 3.5905 REMARK 3 L33: 1.6492 L12: 2.5989 REMARK 3 L13: -3.1747 L23: -2.2726 REMARK 3 S TENSOR REMARK 3 S11: 0.2549 S12: 0.2379 S13: 0.9413 REMARK 3 S21: 0.1320 S22: 0.1781 S23: 0.8331 REMARK 3 S31: -1.2842 S32: -0.6426 S33: -0.4330 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8918 27.1923 10.8328 REMARK 3 T TENSOR REMARK 3 T11: 0.3116 T22: 0.8636 REMARK 3 T33: 0.8753 T12: 0.4163 REMARK 3 T13: -0.0281 T23: 0.2123 REMARK 3 L TENSOR REMARK 3 L11: 5.1231 L22: 5.1428 REMARK 3 L33: 15.9776 L12: 0.7966 REMARK 3 L13: 6.1788 L23: 7.5020 REMARK 3 S TENSOR REMARK 3 S11: -0.6936 S12: -0.2796 S13: 0.6556 REMARK 3 S21: -0.2537 S22: -0.5300 S23: 1.3061 REMARK 3 S31: -0.3848 S32: -1.3397 S33: 1.2237 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2455 16.9317 23.0815 REMARK 3 T TENSOR REMARK 3 T11: 0.1730 T22: 0.3722 REMARK 3 T33: 0.3657 T12: 0.0706 REMARK 3 T13: 0.1434 T23: 0.1001 REMARK 3 L TENSOR REMARK 3 L11: 11.7486 L22: 5.5504 REMARK 3 L33: 17.1918 L12: 1.8830 REMARK 3 L13: 3.4086 L23: 0.1768 REMARK 3 S TENSOR REMARK 3 S11: -0.0567 S12: -0.9448 S13: -0.4912 REMARK 3 S21: 1.0573 S22: 0.2478 S23: 1.4362 REMARK 3 S31: 0.0371 S32: -0.4411 S33: -0.1911 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0156 25.6902 21.2533 REMARK 3 T TENSOR REMARK 3 T11: 0.0957 T22: 0.2507 REMARK 3 T33: 0.3055 T12: 0.1049 REMARK 3 T13: 0.0378 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 4.3338 L22: 10.2399 REMARK 3 L33: 7.9791 L12: 2.3919 REMARK 3 L13: -0.4830 L23: -1.1003 REMARK 3 S TENSOR REMARK 3 S11: 0.0834 S12: -0.1825 S13: 0.6124 REMARK 3 S21: 0.4048 S22: 0.0002 S23: 0.3096 REMARK 3 S31: -0.4018 S32: -0.1647 S33: -0.0835 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 40.1937 27.3444 14.7416 REMARK 3 T TENSOR REMARK 3 T11: 0.3005 T22: 0.1979 REMARK 3 T33: 0.2594 T12: 0.0658 REMARK 3 T13: 0.0076 T23: 0.0520 REMARK 3 L TENSOR REMARK 3 L11: 3.7763 L22: 0.8090 REMARK 3 L33: 11.1827 L12: 1.6512 REMARK 3 L13: -1.7145 L23: 0.2016 REMARK 3 S TENSOR REMARK 3 S11: -0.0518 S12: 0.2208 S13: 0.5957 REMARK 3 S21: -0.1227 S22: 0.0510 S23: 0.9561 REMARK 3 S31: -0.7810 S32: -0.1334 S33: 0.0008 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 43.8873 25.9706 8.8042 REMARK 3 T TENSOR REMARK 3 T11: 0.2166 T22: 0.1638 REMARK 3 T33: 0.1685 T12: 0.0025 REMARK 3 T13: -0.0047 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.0511 L22: 2.4198 REMARK 3 L33: 5.8801 L12: -0.4345 REMARK 3 L13: -0.2296 L23: -0.0430 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: -0.0809 S13: 0.0713 REMARK 3 S21: 0.2676 S22: -0.0607 S23: 0.1760 REMARK 3 S31: 0.3512 S32: -0.1763 S33: 0.0629 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 49.8410 19.8972 5.1400 REMARK 3 T TENSOR REMARK 3 T11: 0.2778 T22: 0.3825 REMARK 3 T33: 0.1202 T12: 0.0451 REMARK 3 T13: -0.0041 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 2.5331 L22: 6.4844 REMARK 3 L33: 6.9054 L12: 1.7492 REMARK 3 L13: 1.4988 L23: 2.6102 REMARK 3 S TENSOR REMARK 3 S11: -0.1870 S12: 0.3040 S13: -0.0732 REMARK 3 S21: -0.5257 S22: 0.4573 S23: -0.0256 REMARK 3 S31: 0.1505 S32: 0.6636 S33: -0.2704 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5154 9.9880 1.8390 REMARK 3 T TENSOR REMARK 3 T11: 0.4714 T22: 0.2472 REMARK 3 T33: 0.1646 T12: 0.0067 REMARK 3 T13: -0.0309 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 11.9685 L22: 1.5676 REMARK 3 L33: 2.5311 L12: 0.3440 REMARK 3 L13: 3.3497 L23: -1.4793 REMARK 3 S TENSOR REMARK 3 S11: -0.0888 S12: 0.3456 S13: -0.2446 REMARK 3 S21: -0.5570 S22: 0.2271 S23: 0.4100 REMARK 3 S31: 0.5134 S32: -0.0934 S33: -0.1383 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 238 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 37.8848 4.6595 6.8679 REMARK 3 T TENSOR REMARK 3 T11: 0.3611 T22: 0.2389 REMARK 3 T33: 0.1778 T12: 0.0567 REMARK 3 T13: -0.0628 T23: 0.1187 REMARK 3 L TENSOR REMARK 3 L11: 4.5941 L22: 9.9236 REMARK 3 L33: 2.0416 L12: 5.3316 REMARK 3 L13: 1.2892 L23: -0.0225 REMARK 3 S TENSOR REMARK 3 S11: 0.1226 S12: -0.3918 S13: -0.4343 REMARK 3 S21: 0.0097 S22: -0.0780 S23: 0.2350 REMARK 3 S31: 0.2730 S32: 0.1161 S33: -0.0446 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923, 0.96400 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7690 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 36.387 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0640 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.19700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.527 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, DM 5.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (10 MG/ML PROTEIN, REMARK 280 0.050 M SODIUM CHLORIDE, 0.0031 M SODIUM AZIDE, 0.0003 M TCEP, REMARK 280 0.005 M BIS TRIS PH 7.0) MIXED IN A 1:1 RATIO WITH THE WELL REMARK 280 SOLUTION (0.90 M LITHIUM SULFATE, 0.10 M SODIUM SUCCINATE PH 4), REMARK 280 CRYOPROTECTED WITH: WELL SOLUTION SUPPLEMENTED WITH UP TO 20% REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.23633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.47267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.47267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.23633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 3 REMARK 465 ILE A 258 REMARK 465 SER A 259 REMARK 465 GLU A 260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 57 123.44 -173.73 REMARK 500 HIS A 58 -71.55 -80.06 REMARK 500 PRO A 61 -27.97 -29.51 REMARK 500 LYS A 69 -125.80 55.37 REMARK 500 VAL A 88 -71.58 -107.96 REMARK 500 GLU A 126 113.31 -32.07 REMARK 500 TYR A 174 -72.87 -45.77 REMARK 500 MSE A 175 53.51 -110.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 118 GLY A 119 -140.81 REMARK 500 LYS A 125 GLU A 126 -131.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 261 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.80034 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE PROTEIN IS NOT AVAILABLE REMARK 999 AT THE UNP DATABASE AT THE TIME OF PROCESSING. DBREF 2O55 A 3 260 PDB 2O55 2O55 3 260 SEQRES 1 A 258 SER SER LYS VAL ILE ILE PRO LYS ILE VAL GLY HIS ARG SEQRES 2 A 258 GLY VAL GLY LYS GLU GLY LEU ALA PRO GLU ASN THR LEU SEQRES 3 A 258 ARG SER PHE VAL LEU CYS MSE GLU ARG ASN ILE PRO TYR SEQRES 4 A 258 ILE GLU THR ASP LEU ARG VAL CYS LYS THR GLY GLU ILE SEQRES 5 A 258 VAL LEU PHE HIS GLY THR PRO GLU GLY THR ILE PRO PHE SEQRES 6 A 258 TYR LYS ASP GLY THR SER ARG ILE GLY ASP LEU SER LEU SEQRES 7 A 258 GLU GLU LEU LYS ARG LEU ASP VAL GLY GLY GLY HIS THR SEQRES 8 A 258 ILE PRO SER LEU GLU GLU LEU PHE VAL ALA ILE GLU GLU SEQRES 9 A 258 GLN LYS PHE ASN LEU LYS LEU ASN LEU GLU LEU LYS GLY SEQRES 10 A 258 GLU GLU TRP LYS ARG LYS GLU SER GLY ASP HIS GLN ARG SEQRES 11 A 258 LEU LEU LEU LEU VAL GLU LYS TYR HIS MSE GLN GLU ARG SEQRES 12 A 258 VAL ASP TYR CYS SER PHE HIS HIS GLU ALA LEU ALA HIS SEQRES 13 A 258 LEU LYS ALA LEU CYS PRO ASP VAL LYS ILE THR TYR LEU SEQRES 14 A 258 PHE ASN TYR MSE GLY GLN PRO THR PRO LEU ASP PHE VAL SEQRES 15 A 258 GLU GLN ALA CYS TYR GLY ASP ALA ASN GLY VAL SER MSE SEQRES 16 A 258 LEU PHE HIS TYR LEU THR LYS GLU GLN VAL CYS THR ALA SEQRES 17 A 258 HIS GLU LYS GLY LEU SER VAL THR VAL TRP MSE PRO TRP SEQRES 18 A 258 ILE PHE ASP ASP SER GLU GLU ASP TRP LYS LYS CYS LEU SEQRES 19 A 258 GLU LEU GLN VAL ASP LEU ILE CYS SER ASN TYR PRO PHE SEQRES 20 A 258 GLY LEU MSE ASN PHE LEU SER ASN ILE SER GLU MODRES 2O55 MSE A 35 MET SELENOMETHIONINE MODRES 2O55 MSE A 142 MET SELENOMETHIONINE MODRES 2O55 MSE A 175 MET SELENOMETHIONINE MODRES 2O55 MSE A 197 MET SELENOMETHIONINE MODRES 2O55 MSE A 221 MET SELENOMETHIONINE MODRES 2O55 MSE A 252 MET SELENOMETHIONINE HET MSE A 35 8 HET MSE A 142 8 HET MSE A 175 8 HET MSE A 197 8 HET MSE A 221 8 HET MSE A 252 8 HET SO4 A 1 5 HET SO4 A 2 5 HET SO4 A 261 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HOH *(H2 O) HELIX 1 1 THR A 27 ARG A 37 1 11 HELIX 2 2 ARG A 74 LEU A 78 5 5 HELIX 3 3 SER A 79 LYS A 84 1 6 HELIX 4 4 SER A 96 GLN A 107 1 12 HELIX 5 5 GLY A 128 LYS A 139 1 12 HELIX 6 6 TYR A 140 HIS A 141 5 2 HELIX 7 7 MSE A 142 GLU A 144 5 3 HELIX 8 8 HIS A 152 CYS A 163 1 12 HELIX 9 9 ASP A 182 GLY A 190 1 9 HELIX 10 10 HIS A 200 LEU A 202 5 3 HELIX 11 11 THR A 203 LYS A 213 1 11 HELIX 12 12 SER A 228 GLN A 239 1 12 HELIX 13 13 TYR A 247 SER A 256 1 10 SHEET 1 A10 ILE A 54 LEU A 56 0 SHEET 2 A10 TYR A 41 VAL A 48 -1 N ARG A 47 O VAL A 55 SHEET 3 A10 LYS A 112 LEU A 117 1 O ASN A 114 N ILE A 42 SHEET 4 A10 VAL A 146 SER A 150 1 O CYS A 149 N LEU A 115 SHEET 5 A10 LYS A 167 LEU A 171 1 O LYS A 167 N TYR A 148 SHEET 6 A10 GLY A 194 LEU A 198 1 O GLY A 194 N TYR A 170 SHEET 7 A10 SER A 216 TRP A 220 1 O TRP A 220 N MSE A 197 SHEET 8 A10 LEU A 242 SER A 245 1 O CYS A 244 N VAL A 219 SHEET 9 A10 LYS A 10 HIS A 14 1 N VAL A 12 O ILE A 243 SHEET 10 A10 TYR A 41 VAL A 48 1 O TYR A 41 N GLY A 13 LINK C CYS A 34 N MSE A 35 1555 1555 1.33 LINK C MSE A 35 N GLU A 36 1555 1555 1.33 LINK C HIS A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N GLN A 143 1555 1555 1.34 LINK C TYR A 174 N MSE A 175 1555 1555 1.32 LINK C MSE A 175 N GLY A 176 1555 1555 1.33 LINK C SER A 196 N MSE A 197 1555 1555 1.33 LINK C MSE A 197 N LEU A 198 1555 1555 1.33 LINK C TRP A 220 N MSE A 221 1555 1555 1.34 LINK C MSE A 221 N PRO A 222 1555 1555 1.35 LINK C LEU A 251 N MSE A 252 1555 1555 1.34 LINK C MSE A 252 N ASN A 253 1555 1555 1.34 SITE 1 AC1 6 HIS A 14 ARG A 15 HIS A 58 TRP A 220 SITE 2 AC1 6 PRO A 222 TRP A 223 SITE 1 AC2 6 GLU A 116 LYS A 118 GLY A 119 PHE A 151 SITE 2 AC2 6 HIS A 152 TYR A 174 SITE 1 AC3 5 LYS A 123 HIS A 152 HIS A 153 GLU A 154 SITE 2 AC3 5 HOH A 262 CRYST1 102.427 102.427 51.709 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009763 0.005637 0.000000 0.00000 SCALE2 0.000000 0.011273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019339 0.00000