data_2O6N # _entry.id 2O6N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2O6N pdb_00002o6n 10.2210/pdb2o6n/pdb RCSB RCSB040753 ? ? WWPDB D_1000040753 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_dist_value' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 3 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 6 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 14 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2O6N _pdbx_database_status.recvd_initial_deposition_date 2006-12-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1RH4 'RH4 DESIGNED RIGHT-HANDED COILED COIL TETRAMER' unspecified PDB 1TGG 'RH3 DESIGNED RIGHT-HANDED COILED COIL TRIMER' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sales, M.' 1 'Alber, T.' 2 # _citation.id primary _citation.title 'Structure of a designed, right-handed coiled-coil tetramer containing all biological amino acids.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 16 _citation.page_first 2224 _citation.page_last 2232 _citation.year 2007 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17766380 _citation.pdbx_database_id_DOI 10.1110/ps.062702907 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sales, M.' 1 ? primary 'Plecs, J.J.' 2 ? primary 'Holton, J.M.' 3 ? primary 'Alber, T.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RH4B designed peptide' 3947.590 1 ? ? ? ? 2 non-polymer syn 'YTTERBIUM (II) ION' 173.040 1 ? ? ? ? 3 water nat water 18.015 119 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)AEIEQAKKEIAYLIKKAK(CGU)EIL(CGU)EIKKAKQEIA(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XAEIEQAKKEIAYLIKKAKEEILEEIKKAKQEIAX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'YTTERBIUM (II) ION' YB2 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 ALA n 1 3 GLU n 1 4 ILE n 1 5 GLU n 1 6 GLN n 1 7 ALA n 1 8 LYS n 1 9 LYS n 1 10 GLU n 1 11 ILE n 1 12 ALA n 1 13 TYR n 1 14 LEU n 1 15 ILE n 1 16 LYS n 1 17 LYS n 1 18 ALA n 1 19 LYS n 1 20 CGU n 1 21 GLU n 1 22 ILE n 1 23 LEU n 1 24 CGU n 1 25 GLU n 1 26 ILE n 1 27 LYS n 1 28 LYS n 1 29 ALA n 1 30 LYS n 1 31 GLN n 1 32 GLU n 1 33 ILE n 1 34 ALA n 1 35 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'chemical peptide synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 CGU 'L-peptide linking' n 'GAMMA-CARBOXY-GLUTAMIC ACID' ? 'C6 H9 N O6' 191.139 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 YB2 non-polymer . 'YTTERBIUM (II) ION' ? 'Yb 2' 173.040 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 ALA 2 1 1 ALA ALA A . n A 1 3 GLU 3 2 2 GLU GLU A . n A 1 4 ILE 4 3 3 ILE ILE A . n A 1 5 GLU 5 4 4 GLU GLU A . n A 1 6 GLN 6 5 5 GLN GLN A . n A 1 7 ALA 7 6 6 ALA ALA A . n A 1 8 LYS 8 7 7 LYS LYS A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 GLU 10 9 9 GLU GLU A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 TYR 13 12 12 TYR TYR A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 ILE 15 14 14 ILE ILE A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 LYS 19 18 18 LYS LYS A . n A 1 20 CGU 20 19 19 CGU CGU A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 CGU 24 23 23 CGU CGU A . n A 1 25 GLU 25 24 24 GLU GLU A . n A 1 26 ILE 26 25 25 ILE ILE A . n A 1 27 LYS 27 26 26 LYS LYS A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 ALA 29 28 28 ALA ALA A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 GLN 31 30 30 GLN GLN A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 ILE 33 32 32 ILE ILE A . n A 1 34 ALA 34 33 33 ALA ALA A . n A 1 35 NH2 35 34 34 NH2 NH2 A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YB2 1 201 201 YB2 YB2 A . C 3 HOH 1 202 1 HOH HOH A . C 3 HOH 2 203 2 HOH HOH A . C 3 HOH 3 204 3 HOH HOH A . C 3 HOH 4 205 4 HOH HOH A . C 3 HOH 5 206 5 HOH HOH A . C 3 HOH 6 207 6 HOH HOH A . C 3 HOH 7 208 7 HOH HOH A . C 3 HOH 8 209 8 HOH HOH A . C 3 HOH 9 210 9 HOH HOH A . C 3 HOH 10 211 10 HOH HOH A . C 3 HOH 11 212 11 HOH HOH A . C 3 HOH 12 213 12 HOH HOH A . C 3 HOH 13 214 13 HOH HOH A . C 3 HOH 14 215 14 HOH HOH A . C 3 HOH 15 216 15 HOH HOH A . C 3 HOH 16 217 16 HOH HOH A . C 3 HOH 17 218 17 HOH HOH A . C 3 HOH 18 219 18 HOH HOH A . C 3 HOH 19 220 19 HOH HOH A . C 3 HOH 20 221 20 HOH HOH A . C 3 HOH 21 222 21 HOH HOH A . C 3 HOH 22 223 22 HOH HOH A . C 3 HOH 23 224 23 HOH HOH A . C 3 HOH 24 225 24 HOH HOH A . C 3 HOH 25 226 25 HOH HOH A . C 3 HOH 26 227 26 HOH HOH A . C 3 HOH 27 228 27 HOH HOH A . C 3 HOH 28 229 28 HOH HOH A . C 3 HOH 29 230 29 HOH HOH A . C 3 HOH 30 231 30 HOH HOH A . C 3 HOH 31 232 31 HOH HOH A . C 3 HOH 32 233 32 HOH HOH A . C 3 HOH 33 234 33 HOH HOH A . C 3 HOH 34 235 34 HOH HOH A . C 3 HOH 35 236 35 HOH HOH A . C 3 HOH 36 237 36 HOH HOH A . C 3 HOH 37 238 37 HOH HOH A . C 3 HOH 38 239 38 HOH HOH A . C 3 HOH 39 240 39 HOH HOH A . C 3 HOH 40 241 40 HOH HOH A . C 3 HOH 41 242 41 HOH HOH A . C 3 HOH 42 243 42 HOH HOH A . C 3 HOH 43 244 43 HOH HOH A . C 3 HOH 44 245 44 HOH HOH A . C 3 HOH 45 246 45 HOH HOH A . C 3 HOH 46 247 46 HOH HOH A . C 3 HOH 47 248 47 HOH HOH A . C 3 HOH 48 249 48 HOH HOH A . C 3 HOH 49 250 49 HOH HOH A . C 3 HOH 50 251 50 HOH HOH A . C 3 HOH 51 252 51 HOH HOH A . C 3 HOH 52 253 52 HOH HOH A . C 3 HOH 53 254 53 HOH HOH A . C 3 HOH 54 255 54 HOH HOH A . C 3 HOH 55 256 55 HOH HOH A . C 3 HOH 56 257 56 HOH HOH A . C 3 HOH 57 258 57 HOH HOH A . C 3 HOH 58 259 58 HOH HOH A . C 3 HOH 59 260 59 HOH HOH A . C 3 HOH 60 261 60 HOH HOH A . C 3 HOH 61 262 61 HOH HOH A . C 3 HOH 62 263 62 HOH HOH A . C 3 HOH 63 264 63 HOH HOH A . C 3 HOH 64 265 64 HOH HOH A . C 3 HOH 65 266 65 HOH HOH A . C 3 HOH 66 267 66 HOH HOH A . C 3 HOH 67 268 67 HOH HOH A . C 3 HOH 68 269 68 HOH HOH A . C 3 HOH 69 270 69 HOH HOH A . C 3 HOH 70 271 70 HOH HOH A . C 3 HOH 71 272 71 HOH HOH A . C 3 HOH 72 273 72 HOH HOH A . C 3 HOH 73 274 73 HOH HOH A . C 3 HOH 74 275 74 HOH HOH A . C 3 HOH 75 276 75 HOH HOH A . C 3 HOH 76 277 76 HOH HOH A . C 3 HOH 77 278 77 HOH HOH A . C 3 HOH 78 279 78 HOH HOH A . C 3 HOH 79 280 79 HOH HOH A . C 3 HOH 80 281 80 HOH HOH A . C 3 HOH 81 282 81 HOH HOH A . C 3 HOH 82 283 82 HOH HOH A . C 3 HOH 83 284 83 HOH HOH A . C 3 HOH 84 285 84 HOH HOH A . C 3 HOH 85 286 85 HOH HOH A . C 3 HOH 86 287 86 HOH HOH A . C 3 HOH 87 288 87 HOH HOH A . C 3 HOH 88 289 88 HOH HOH A . C 3 HOH 89 290 89 HOH HOH A . C 3 HOH 90 291 90 HOH HOH A . C 3 HOH 91 292 91 HOH HOH A . C 3 HOH 92 293 92 HOH HOH A . C 3 HOH 93 294 93 HOH HOH A . C 3 HOH 94 295 94 HOH HOH A . C 3 HOH 95 296 95 HOH HOH A . C 3 HOH 96 297 96 HOH HOH A . C 3 HOH 97 298 97 HOH HOH A . C 3 HOH 98 299 98 HOH HOH A . C 3 HOH 99 300 100 HOH HOH A . C 3 HOH 100 301 101 HOH HOH A . C 3 HOH 101 302 102 HOH HOH A . C 3 HOH 102 303 103 HOH HOH A . C 3 HOH 103 304 104 HOH HOH A . C 3 HOH 104 305 105 HOH HOH A . C 3 HOH 105 306 106 HOH HOH A . C 3 HOH 106 307 107 HOH HOH A . C 3 HOH 107 308 109 HOH HOH A . C 3 HOH 108 309 110 HOH HOH A . C 3 HOH 109 310 111 HOH HOH A . C 3 HOH 110 311 112 HOH HOH A . C 3 HOH 111 312 113 HOH HOH A . C 3 HOH 112 313 114 HOH HOH A . C 3 HOH 113 314 115 HOH HOH A . C 3 HOH 114 315 116 HOH HOH A . C 3 HOH 115 316 117 HOH HOH A . C 3 HOH 116 317 118 HOH HOH A . C 3 HOH 117 318 119 HOH HOH A . C 3 HOH 118 319 120 HOH HOH A . C 3 HOH 119 320 121 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 4 ? CG ? A GLU 5 CG 2 1 Y 1 A GLU 4 ? CD ? A GLU 5 CD 3 1 Y 1 A GLU 4 ? OE1 ? A GLU 5 OE1 4 1 Y 1 A GLU 4 ? OE2 ? A GLU 5 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 Blu-Ice 'data collection' . ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 SOLVE phasing . ? 5 # _cell.entry_id 2O6N _cell.length_a 38.356 _cell.length_b 38.356 _cell.length_c 49.679 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2O6N _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2O6N _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.2 _exptl_crystal_grow.pdbx_details ;10% PEG 4000, 0.1M ammonium sulfate, 0.15M sodium acetate, 10mM ytterbium(II) chloride, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2000-02-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.000 1.0 2 1.2398 1.0 3 1.3858 1.0 4 1.3864 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000,1.2398,1.3858,1.3864 # _reflns.entry_id 2O6N _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 30.36 _reflns.d_resolution_high 1.00 _reflns.number_obs 20631 _reflns.number_all 20717 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rsym_value 0.074 _reflns.pdbx_netI_over_sigmaI 21.09 _reflns.B_iso_Wilson_estimate 8.70 _reflns.pdbx_redundancy 8.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.00 _reflns_shell.d_res_low 1.05 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.011 _reflns_shell.pdbx_Rsym_value 0.85 _reflns_shell.meanI_over_sigI_obs 1.26 _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2O6N _refine.ls_number_reflns_obs 14797 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.36 _refine.ls_d_res_high 1.10 _refine.ls_percent_reflns_obs 99.4 _refine.ls_R_factor_obs 0.116 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.115 _refine.ls_R_factor_R_free 0.132 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 791 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.980 _refine.correlation_coeff_Fo_to_Fc_free 0.978 _refine.B_iso_mean 11.46 _refine.aniso_B[1][1] 0.23 _refine.aniso_B[2][2] 0.23 _refine.aniso_B[3][3] -0.47 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.026 _refine.pdbx_overall_ESU_R_Free 0.025 _refine.overall_SU_ML 0.014 _refine.overall_SU_B 0.662 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 274 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 394 _refine_hist.d_res_high 1.10 _refine_hist.d_res_low 30.36 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 312 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 339 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.298 2.033 ? 419 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.729 3.000 ? 791 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.014 5.000 ? 40 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 23.362 29.167 ? 12 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.189 15.000 ? 77 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.084 0.200 ? 46 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 340 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 48 'X-RAY DIFFRACTION' ? r_nbd_refined 0.328 0.200 ? 89 'X-RAY DIFFRACTION' ? r_nbd_other 0.175 0.200 ? 346 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.178 0.200 ? 170 'X-RAY DIFFRACTION' ? r_nbtor_other 0.083 0.200 ? 182 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.244 0.200 ? 73 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.079 0.200 ? 3 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.302 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.225 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.243 0.200 ? 44 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.167 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.991 1.500 ? 271 'X-RAY DIFFRACTION' ? r_mcbond_other 0.725 1.500 ? 74 'X-RAY DIFFRACTION' ? r_mcangle_it 2.033 2.000 ? 309 'X-RAY DIFFRACTION' ? r_scbond_it 4.618 3.000 ? 153 'X-RAY DIFFRACTION' ? r_scangle_it 5.680 4.500 ? 110 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.675 3.000 ? 775 'X-RAY DIFFRACTION' ? r_sphericity_free 11.464 5.000 ? 121 'X-RAY DIFFRACTION' ? r_sphericity_bonded 4.175 5.000 ? 648 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.10 _refine_ls_shell.d_res_low 1.13 _refine_ls_shell.number_reflns_R_work 1073 _refine_ls_shell.R_factor_R_work 0.227 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.217 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2O6N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2O6N _struct.title 'RH4B: designed right-handed coiled coil tetramer with all biological amino acids' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2O6N _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'RIGHT-HANDED, TETRAMER, DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2O6N _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AEIEQAKKEIAYLIKKAKEEILEEIKKAKQEIA _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession 2O6N _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2O6N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 34 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2O6N _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 33 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 33 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6620 ? 1 MORE -80 ? 1 'SSA (A^2)' 9300 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 38.3560000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0.0000000000 -1.0000000000 0.0000000000 19.1780000000 1.0000000000 0.0000000000 0.0000000000 19.1780000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0.0000000000 1.0000000000 0.0000000000 -19.1780000000 -1.0000000000 0.0000000000 0.0000000000 19.1780000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;The biological assembly is the tetramer generated from the monomer in the asymmetric unit by the 4 operations: x,y,z; y-1/2,-x+1/2,z; -x,1-y,z; -y+1/2,x+1/2,z. ; # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 2 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 34 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 1 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 33 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 33 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A ALA 2 N ? ? A ACE 0 A ALA 1 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale2 covale both ? A LYS 19 C ? ? ? 1_555 A CGU 20 N ? ? A LYS 18 A CGU 19 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A CGU 20 C ? ? ? 1_555 A GLU 21 N A ? A CGU 19 A GLU 20 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? A LEU 23 C ? ? ? 1_555 A CGU 24 N ? ? A LEU 22 A CGU 23 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale5 covale both ? A CGU 24 C ? ? ? 1_555 A GLU 25 N ? ? A CGU 23 A GLU 24 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale6 covale both ? A ALA 34 C ? ? ? 1_555 A NH2 35 N ? ? A ALA 33 A NH2 34 1_555 ? ? ? ? ? ? ? 1.441 ? ? metalc1 metalc ? ? A CGU 20 OE12 ? ? ? 1_555 B YB2 . YB ? ? A CGU 19 A YB2 201 1_555 ? ? ? ? ? ? ? 2.207 ? ? metalc2 metalc ? ? A CGU 20 OE21 ? ? ? 1_555 B YB2 . YB ? ? A CGU 19 A YB2 201 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc3 metalc ? ? A CGU 24 OE12 ? ? ? 1_555 B YB2 . YB ? ? A CGU 23 A YB2 201 1_555 ? ? ? ? ? ? ? 2.366 ? ? metalc4 metalc ? ? A CGU 24 OE21 ? ? ? 1_555 B YB2 . YB ? ? A CGU 23 A YB2 201 1_555 ? ? ? ? ? ? ? 2.246 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE12 ? A CGU 20 ? A CGU 19 ? 1_555 YB ? B YB2 . ? A YB2 201 ? 1_555 OE21 ? A CGU 20 ? A CGU 19 ? 1_555 76.5 ? 2 OE12 ? A CGU 20 ? A CGU 19 ? 1_555 YB ? B YB2 . ? A YB2 201 ? 1_555 OE12 ? A CGU 24 ? A CGU 23 ? 1_555 144.8 ? 3 OE21 ? A CGU 20 ? A CGU 19 ? 1_555 YB ? B YB2 . ? A YB2 201 ? 1_555 OE12 ? A CGU 24 ? A CGU 23 ? 1_555 82.1 ? 4 OE12 ? A CGU 20 ? A CGU 19 ? 1_555 YB ? B YB2 . ? A YB2 201 ? 1_555 OE21 ? A CGU 24 ? A CGU 23 ? 1_555 78.2 ? 5 OE21 ? A CGU 20 ? A CGU 19 ? 1_555 YB ? B YB2 . ? A YB2 201 ? 1_555 OE21 ? A CGU 24 ? A CGU 23 ? 1_555 86.9 ? 6 OE12 ? A CGU 24 ? A CGU 23 ? 1_555 YB ? B YB2 . ? A YB2 201 ? 1_555 OE21 ? A CGU 24 ? A CGU 23 ? 1_555 72.9 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id YB2 _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE YB2 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CGU A 20 ? CGU A 19 . ? 1_555 ? 2 AC1 5 CGU A 24 ? CGU A 23 . ? 7_555 ? 3 AC1 5 CGU A 24 ? CGU A 23 . ? 1_555 ? 4 AC1 5 HOH C . ? HOH A 219 . ? 7_555 ? 5 AC1 5 HOH C . ? HOH A 301 . ? 7_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 227 ? ? O A HOH 315 ? ? 1.96 2 1 O A HOH 246 ? ? O A HOH 256 ? ? 2.14 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 YB _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 YB2 _pdbx_validate_symm_contact.auth_seq_id_1 201 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 301 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_555 _pdbx_validate_symm_contact.dist 2.06 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CGU 20 A CGU 19 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' 2 A CGU 24 A CGU 23 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 281 ? C HOH . 2 1 A HOH 302 ? C HOH . 3 1 A HOH 304 ? C HOH . 4 1 A HOH 309 ? C HOH . # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE The sequence was computationally designed to optimize the stability and specificity of a right-handed coiled- coil tetramer ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 CGU N N N N 21 CGU CA C N S 22 CGU C C N N 23 CGU O O N N 24 CGU OXT O N N 25 CGU CB C N N 26 CGU CG C N N 27 CGU CD1 C N N 28 CGU CD2 C N N 29 CGU OE11 O N N 30 CGU OE12 O N N 31 CGU OE21 O N N 32 CGU OE22 O N N 33 CGU H H N N 34 CGU H2 H N N 35 CGU HA H N N 36 CGU HXT H N N 37 CGU HB2 H N N 38 CGU HB3 H N N 39 CGU HG H N N 40 CGU HE12 H N N 41 CGU HE22 H N N 42 GLN N N N N 43 GLN CA C N S 44 GLN C C N N 45 GLN O O N N 46 GLN CB C N N 47 GLN CG C N N 48 GLN CD C N N 49 GLN OE1 O N N 50 GLN NE2 N N N 51 GLN OXT O N N 52 GLN H H N N 53 GLN H2 H N N 54 GLN HA H N N 55 GLN HB2 H N N 56 GLN HB3 H N N 57 GLN HG2 H N N 58 GLN HG3 H N N 59 GLN HE21 H N N 60 GLN HE22 H N N 61 GLN HXT H N N 62 GLU N N N N 63 GLU CA C N S 64 GLU C C N N 65 GLU O O N N 66 GLU CB C N N 67 GLU CG C N N 68 GLU CD C N N 69 GLU OE1 O N N 70 GLU OE2 O N N 71 GLU OXT O N N 72 GLU H H N N 73 GLU H2 H N N 74 GLU HA H N N 75 GLU HB2 H N N 76 GLU HB3 H N N 77 GLU HG2 H N N 78 GLU HG3 H N N 79 GLU HE2 H N N 80 GLU HXT H N N 81 HOH O O N N 82 HOH H1 H N N 83 HOH H2 H N N 84 ILE N N N N 85 ILE CA C N S 86 ILE C C N N 87 ILE O O N N 88 ILE CB C N S 89 ILE CG1 C N N 90 ILE CG2 C N N 91 ILE CD1 C N N 92 ILE OXT O N N 93 ILE H H N N 94 ILE H2 H N N 95 ILE HA H N N 96 ILE HB H N N 97 ILE HG12 H N N 98 ILE HG13 H N N 99 ILE HG21 H N N 100 ILE HG22 H N N 101 ILE HG23 H N N 102 ILE HD11 H N N 103 ILE HD12 H N N 104 ILE HD13 H N N 105 ILE HXT H N N 106 LEU N N N N 107 LEU CA C N S 108 LEU C C N N 109 LEU O O N N 110 LEU CB C N N 111 LEU CG C N N 112 LEU CD1 C N N 113 LEU CD2 C N N 114 LEU OXT O N N 115 LEU H H N N 116 LEU H2 H N N 117 LEU HA H N N 118 LEU HB2 H N N 119 LEU HB3 H N N 120 LEU HG H N N 121 LEU HD11 H N N 122 LEU HD12 H N N 123 LEU HD13 H N N 124 LEU HD21 H N N 125 LEU HD22 H N N 126 LEU HD23 H N N 127 LEU HXT H N N 128 LYS N N N N 129 LYS CA C N S 130 LYS C C N N 131 LYS O O N N 132 LYS CB C N N 133 LYS CG C N N 134 LYS CD C N N 135 LYS CE C N N 136 LYS NZ N N N 137 LYS OXT O N N 138 LYS H H N N 139 LYS H2 H N N 140 LYS HA H N N 141 LYS HB2 H N N 142 LYS HB3 H N N 143 LYS HG2 H N N 144 LYS HG3 H N N 145 LYS HD2 H N N 146 LYS HD3 H N N 147 LYS HE2 H N N 148 LYS HE3 H N N 149 LYS HZ1 H N N 150 LYS HZ2 H N N 151 LYS HZ3 H N N 152 LYS HXT H N N 153 NH2 N N N N 154 NH2 HN1 H N N 155 NH2 HN2 H N N 156 TYR N N N N 157 TYR CA C N S 158 TYR C C N N 159 TYR O O N N 160 TYR CB C N N 161 TYR CG C Y N 162 TYR CD1 C Y N 163 TYR CD2 C Y N 164 TYR CE1 C Y N 165 TYR CE2 C Y N 166 TYR CZ C Y N 167 TYR OH O N N 168 TYR OXT O N N 169 TYR H H N N 170 TYR H2 H N N 171 TYR HA H N N 172 TYR HB2 H N N 173 TYR HB3 H N N 174 TYR HD1 H N N 175 TYR HD2 H N N 176 TYR HE1 H N N 177 TYR HE2 H N N 178 TYR HH H N N 179 TYR HXT H N N 180 YB2 YB YB N N 181 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 CGU N CA sing N N 19 CGU N H sing N N 20 CGU N H2 sing N N 21 CGU CA C sing N N 22 CGU CA CB sing N N 23 CGU CA HA sing N N 24 CGU C O doub N N 25 CGU C OXT sing N N 26 CGU OXT HXT sing N N 27 CGU CB CG sing N N 28 CGU CB HB2 sing N N 29 CGU CB HB3 sing N N 30 CGU CG CD1 sing N N 31 CGU CG CD2 sing N N 32 CGU CG HG sing N N 33 CGU CD1 OE11 doub N N 34 CGU CD1 OE12 sing N N 35 CGU CD2 OE21 doub N N 36 CGU CD2 OE22 sing N N 37 CGU OE12 HE12 sing N N 38 CGU OE22 HE22 sing N N 39 GLN N CA sing N N 40 GLN N H sing N N 41 GLN N H2 sing N N 42 GLN CA C sing N N 43 GLN CA CB sing N N 44 GLN CA HA sing N N 45 GLN C O doub N N 46 GLN C OXT sing N N 47 GLN CB CG sing N N 48 GLN CB HB2 sing N N 49 GLN CB HB3 sing N N 50 GLN CG CD sing N N 51 GLN CG HG2 sing N N 52 GLN CG HG3 sing N N 53 GLN CD OE1 doub N N 54 GLN CD NE2 sing N N 55 GLN NE2 HE21 sing N N 56 GLN NE2 HE22 sing N N 57 GLN OXT HXT sing N N 58 GLU N CA sing N N 59 GLU N H sing N N 60 GLU N H2 sing N N 61 GLU CA C sing N N 62 GLU CA CB sing N N 63 GLU CA HA sing N N 64 GLU C O doub N N 65 GLU C OXT sing N N 66 GLU CB CG sing N N 67 GLU CB HB2 sing N N 68 GLU CB HB3 sing N N 69 GLU CG CD sing N N 70 GLU CG HG2 sing N N 71 GLU CG HG3 sing N N 72 GLU CD OE1 doub N N 73 GLU CD OE2 sing N N 74 GLU OE2 HE2 sing N N 75 GLU OXT HXT sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 ILE N CA sing N N 79 ILE N H sing N N 80 ILE N H2 sing N N 81 ILE CA C sing N N 82 ILE CA CB sing N N 83 ILE CA HA sing N N 84 ILE C O doub N N 85 ILE C OXT sing N N 86 ILE CB CG1 sing N N 87 ILE CB CG2 sing N N 88 ILE CB HB sing N N 89 ILE CG1 CD1 sing N N 90 ILE CG1 HG12 sing N N 91 ILE CG1 HG13 sing N N 92 ILE CG2 HG21 sing N N 93 ILE CG2 HG22 sing N N 94 ILE CG2 HG23 sing N N 95 ILE CD1 HD11 sing N N 96 ILE CD1 HD12 sing N N 97 ILE CD1 HD13 sing N N 98 ILE OXT HXT sing N N 99 LEU N CA sing N N 100 LEU N H sing N N 101 LEU N H2 sing N N 102 LEU CA C sing N N 103 LEU CA CB sing N N 104 LEU CA HA sing N N 105 LEU C O doub N N 106 LEU C OXT sing N N 107 LEU CB CG sing N N 108 LEU CB HB2 sing N N 109 LEU CB HB3 sing N N 110 LEU CG CD1 sing N N 111 LEU CG CD2 sing N N 112 LEU CG HG sing N N 113 LEU CD1 HD11 sing N N 114 LEU CD1 HD12 sing N N 115 LEU CD1 HD13 sing N N 116 LEU CD2 HD21 sing N N 117 LEU CD2 HD22 sing N N 118 LEU CD2 HD23 sing N N 119 LEU OXT HXT sing N N 120 LYS N CA sing N N 121 LYS N H sing N N 122 LYS N H2 sing N N 123 LYS CA C sing N N 124 LYS CA CB sing N N 125 LYS CA HA sing N N 126 LYS C O doub N N 127 LYS C OXT sing N N 128 LYS CB CG sing N N 129 LYS CB HB2 sing N N 130 LYS CB HB3 sing N N 131 LYS CG CD sing N N 132 LYS CG HG2 sing N N 133 LYS CG HG3 sing N N 134 LYS CD CE sing N N 135 LYS CD HD2 sing N N 136 LYS CD HD3 sing N N 137 LYS CE NZ sing N N 138 LYS CE HE2 sing N N 139 LYS CE HE3 sing N N 140 LYS NZ HZ1 sing N N 141 LYS NZ HZ2 sing N N 142 LYS NZ HZ3 sing N N 143 LYS OXT HXT sing N N 144 NH2 N HN1 sing N N 145 NH2 N HN2 sing N N 146 TYR N CA sing N N 147 TYR N H sing N N 148 TYR N H2 sing N N 149 TYR CA C sing N N 150 TYR CA CB sing N N 151 TYR CA HA sing N N 152 TYR C O doub N N 153 TYR C OXT sing N N 154 TYR CB CG sing N N 155 TYR CB HB2 sing N N 156 TYR CB HB3 sing N N 157 TYR CG CD1 doub Y N 158 TYR CG CD2 sing Y N 159 TYR CD1 CE1 sing Y N 160 TYR CD1 HD1 sing N N 161 TYR CD2 CE2 doub Y N 162 TYR CD2 HD2 sing N N 163 TYR CE1 CZ doub Y N 164 TYR CE1 HE1 sing N N 165 TYR CE2 CZ sing Y N 166 TYR CE2 HE2 sing N N 167 TYR CZ OH sing N N 168 TYR OH HH sing N N 169 TYR OXT HXT sing N N 170 # _atom_sites.entry_id 2O6N _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.026072 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026072 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020129 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O YB # loop_