HEADER UNKNOWN FUNCTION 13-DEC-06 2O95 TITLE CRYSTAL STRUCTURE OF THE METAL-FREE DIMERIC HUMAN MOV34 MPN DOMAIN TITLE 2 (RESIDUES 1-186) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MPN DOMAIN, N-TERMINUS DOMAIN, RESIDUES 1-186; COMPND 5 SYNONYM: 26S PROTEASOME REGULATORY SUBUNIT RPN8, 26S PROTEASOME COMPND 6 REGULATORY SUBUNIT S12, PROTEASOME SUBUNIT P40, MOV34 PROTEIN COMPND 7 HOMOLOG; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PSMD7, MOV34L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)SLYD-; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-TEV KEYWDS PSMD7, 26S PROTEASOME, MOV34, JAB1/MPN, METAL-FREE DIMER, UNKNOWN KEYWDS 2 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.SANCHES,B.S.C.ALVES,N.I.T.ZANCHIN,B.G.GUIMARAES REVDAT 4 27-DEC-23 2O95 1 REMARK SEQADV REVDAT 3 13-JUL-11 2O95 1 VERSN REVDAT 2 24-FEB-09 2O95 1 VERSN REVDAT 1 17-JUL-07 2O95 0 JRNL AUTH M.SANCHES,B.S.C.ALVES,N.I.T.ZANCHIN,B.G.GUIMARAES JRNL TITL THE CRYSTAL STRUCTURE OF THE HUMAN MOV34 MPN DOMAIN REVEALS JRNL TITL 2 A METAL-FREE DIMER JRNL REF J.MOL.BIOL. V. 370 846 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17559875 JRNL DOI 10.1016/J.JMB.2007.04.084 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.S.C.ALVES,S.OYAMA JR.,F.C.GOZZO,M.SANCHES,B.G.GUIMARAES, REMARK 1 AUTH 2 N.I.T.ZANCHIN REMARK 1 TITL CHARACTERIZATION OF THE HUMAN ORTHOLOG OF MOV34 REVEALS REMARK 1 TITL 2 EIGHT N-TERMINAL RESIDUES IMPORTANT FOR MPN DOMAIN STABILITY REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 347 608 2006 REMARK 1 REFN ISSN 0006-291X REMARK 1 PMID 16842755 REMARK 1 DOI 10.1016/J.BBRC.2006.06.133 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1973 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2744 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2845 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.712 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3037 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4099 ; 2.050 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 7.372 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;40.079 ;25.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;16.299 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;12.733 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 457 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2198 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1945 ; 0.261 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2066 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 354 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 187 ; 0.262 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1858 ; 0.869 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2968 ; 1.327 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1308 ; 2.542 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1129 ; 3.345 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 181 1 REMARK 3 1 B 1 B 181 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1362 ; 0.090 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 1362 ; 0.280 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O95 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.427 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39272 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 68.205 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : 0.47600 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PHOSPHATE-CITRATE BUFFER, 20% PEG REMARK 280 1000, 0.2M LISO4, 10MM MNCL2 AS ADDITIVE, PH 4.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.05150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.64450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.05150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.64450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED BY THE REMARK 300 SYMMETRY OPERATION -X Y -Z. THE ASYMMETRIC UNIT CONTAINS A DIMMER REMARK 300 WHICH DOES NOT REPRESENT THE BIOLOGICAL ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -83.60729 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -50.49352 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 LEU A 131 REMARK 465 ASP A 146 REMARK 465 ASP A 147 REMARK 465 GLY A 148 REMARK 465 THR A 149 REMARK 465 GLY A 185 REMARK 465 THR A 186 REMARK 465 GLY B 0 REMARK 465 LEU B 131 REMARK 465 ASP B 146 REMARK 465 ASP B 147 REMARK 465 GLY B 148 REMARK 465 THR B 149 REMARK 465 THR B 182 REMARK 465 THR B 183 REMARK 465 VAL B 184 REMARK 465 GLY B 185 REMARK 465 THR B 186 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 28 CE NZ REMARK 480 LYS A 46 CD CE NZ REMARK 480 ARG A 88 CD NE CZ NH1 NH2 REMARK 480 ARG A 90 NE CZ NH1 NH2 REMARK 480 LYS A 103 NZ REMARK 480 LYS A 129 CG CD CE NZ REMARK 480 GLU A 165 CG CD OE1 OE2 REMARK 480 GLU A 166 CG CD OE1 OE2 REMARK 480 ARG A 177 CG CD NE CZ NH1 NH2 REMARK 480 THR A 183 OG1 CG2 REMARK 480 LYS B 28 CE NZ REMARK 480 LYS B 45 NZ REMARK 480 ARG B 88 CD NE CZ NH1 NH2 REMARK 480 ARG B 90 NE CZ NH1 NH2 REMARK 480 LYS B 100 CE NZ REMARK 480 LYS B 129 CG CD CE NZ REMARK 480 ARG B 177 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 180 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 84 O HOH B 2159 1.85 REMARK 500 OD2 ASP A 59 O10 12P A 2001 2.10 REMARK 500 ND1 HIS A 157 O HOH A 2023 2.10 REMARK 500 NE ARG A 177 O HOH A 2147 2.11 REMARK 500 OD1 ASP A 59 C23 12P A 2001 2.12 REMARK 500 OD2 ASP B 21 O HOH B 2124 2.13 REMARK 500 OD1 ASP B 59 O HOH B 2073 2.16 REMARK 500 ND1 HIS B 157 O HOH B 2015 2.17 REMARK 500 OD2 ASP A 21 O HOH A 2085 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 177 O HIS B 145 2454 1.29 REMARK 500 CZ ARG A 177 O HIS B 145 2454 1.68 REMARK 500 NH1 ARG A 177 C HIS B 145 2454 1.88 REMARK 500 NH2 ARG A 177 O HIS B 145 2454 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 159 C THR A 159 O -0.121 REMARK 500 LYS B 28 CD LYS B 28 CE -0.167 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 75 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 VAL A 126 CG1 - CB - CG2 ANGL. DEV. = -14.8 DEGREES REMARK 500 LEU B 75 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 VAL B 126 CG1 - CB - CG2 ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 88 118.65 -36.34 REMARK 500 LEU A 133 75.20 65.50 REMARK 500 THR A 151 138.91 -37.19 REMARK 500 THR A 159 130.29 -36.22 REMARK 500 THR A 159 130.67 -36.22 REMARK 500 THR A 182 108.93 49.70 REMARK 500 THR A 183 -102.66 127.04 REMARK 500 LYS B 46 10.93 56.90 REMARK 500 LEU B 133 76.50 66.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 181 THR A 182 -142.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 12P A 2001 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 12P A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ETE B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 2007 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O96 RELATED DB: PDB REMARK 900 THE SHORTER DOMAIN OF THE SAME PROTEIN DBREF 2O95 A 1 186 UNP P51665 PSD7_HUMAN 1 186 DBREF 2O95 B 1 186 UNP P51665 PSD7_HUMAN 1 186 SEQADV 2O95 GLY A 0 UNP P51665 CLONING ARTIFACT SEQADV 2O95 GLY B 0 UNP P51665 CLONING ARTIFACT SEQRES 1 A 187 GLY MET PRO GLU LEU ALA VAL GLN LYS VAL VAL VAL HIS SEQRES 2 A 187 PRO LEU VAL LEU LEU SER VAL VAL ASP HIS PHE ASN ARG SEQRES 3 A 187 ILE GLY LYS VAL GLY ASN GLN LYS ARG VAL VAL GLY VAL SEQRES 4 A 187 LEU LEU GLY SER TRP GLN LYS LYS VAL LEU ASP VAL SER SEQRES 5 A 187 ASN SER PHE ALA VAL PRO PHE ASP GLU ASP ASP LYS ASP SEQRES 6 A 187 ASP SER VAL TRP PHE LEU ASP HIS ASP TYR LEU GLU ASN SEQRES 7 A 187 MET TYR GLY MET PHE LYS LYS VAL ASN ALA ARG GLU ARG SEQRES 8 A 187 ILE VAL GLY TRP TYR HIS THR GLY PRO LYS LEU HIS LYS SEQRES 9 A 187 ASN ASP ILE ALA ILE ASN GLU LEU MET LYS ARG TYR CYS SEQRES 10 A 187 PRO ASN SER VAL LEU VAL ILE ILE ASP VAL LYS PRO LYS SEQRES 11 A 187 ASP LEU GLY LEU PRO THR GLU ALA TYR ILE SER VAL GLU SEQRES 12 A 187 GLU VAL HIS ASP ASP GLY THR PRO THR SER LYS THR PHE SEQRES 13 A 187 GLU HIS VAL THR SER GLU ILE GLY ALA GLU GLU ALA GLU SEQRES 14 A 187 GLU VAL GLY VAL GLU HIS LEU LEU ARG ASP ILE LYS ASP SEQRES 15 A 187 THR THR VAL GLY THR SEQRES 1 B 187 GLY MET PRO GLU LEU ALA VAL GLN LYS VAL VAL VAL HIS SEQRES 2 B 187 PRO LEU VAL LEU LEU SER VAL VAL ASP HIS PHE ASN ARG SEQRES 3 B 187 ILE GLY LYS VAL GLY ASN GLN LYS ARG VAL VAL GLY VAL SEQRES 4 B 187 LEU LEU GLY SER TRP GLN LYS LYS VAL LEU ASP VAL SER SEQRES 5 B 187 ASN SER PHE ALA VAL PRO PHE ASP GLU ASP ASP LYS ASP SEQRES 6 B 187 ASP SER VAL TRP PHE LEU ASP HIS ASP TYR LEU GLU ASN SEQRES 7 B 187 MET TYR GLY MET PHE LYS LYS VAL ASN ALA ARG GLU ARG SEQRES 8 B 187 ILE VAL GLY TRP TYR HIS THR GLY PRO LYS LEU HIS LYS SEQRES 9 B 187 ASN ASP ILE ALA ILE ASN GLU LEU MET LYS ARG TYR CYS SEQRES 10 B 187 PRO ASN SER VAL LEU VAL ILE ILE ASP VAL LYS PRO LYS SEQRES 11 B 187 ASP LEU GLY LEU PRO THR GLU ALA TYR ILE SER VAL GLU SEQRES 12 B 187 GLU VAL HIS ASP ASP GLY THR PRO THR SER LYS THR PHE SEQRES 13 B 187 GLU HIS VAL THR SER GLU ILE GLY ALA GLU GLU ALA GLU SEQRES 14 B 187 GLU VAL GLY VAL GLU HIS LEU LEU ARG ASP ILE LYS ASP SEQRES 15 B 187 THR THR VAL GLY THR HET SO4 A1001 5 HET 12P A2001 36 HET PG4 A2003 16 HET PGE A2004 10 HET PGE A2007 10 HET SO4 B1002 5 HET SO4 B1003 10 HET ETE B2002 14 HET PGE B2005 13 HET PGE B2006 10 HETNAM SO4 SULFATE ION HETNAM 12P DODECAETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM ETE 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN 12P POLYETHYLENE GLYCOL PEG400 FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 12P C24 H50 O13 FORMUL 5 PG4 C8 H18 O5 FORMUL 6 PGE 4(C6 H14 O4) FORMUL 10 ETE C9 H20 O5 FORMUL 13 HOH *320(H2 O) HELIX 1 1 HIS A 12 VAL A 29 1 18 HELIX 2 2 ASP A 71 LYS A 84 1 14 HELIX 3 3 ASN A 104 LYS A 113 1 10 HELIX 4 4 GLU A 165 ILE A 179 1 15 HELIX 5 5 HIS B 12 VAL B 29 1 18 HELIX 6 6 ASP B 71 LYS B 84 1 14 HELIX 7 7 ASN B 104 LYS B 113 1 10 HELIX 8 8 GLU B 165 ILE B 179 1 15 SHEET 1 A 8 LYS A 8 VAL A 11 0 SHEET 2 A 8 VAL A 47 VAL A 56 1 O LEU A 48 N VAL A 10 SHEET 3 A 8 VAL A 36 TRP A 43 -1 N SER A 42 O ASP A 49 SHEET 4 A 8 ARG A 90 HIS A 96 -1 O GLY A 93 N LEU A 39 SHEET 5 A 8 VAL A 120 ILE A 124 1 O ILE A 124 N HIS A 96 SHEET 6 A 8 THR A 135 GLU A 143 -1 O GLU A 136 N ILE A 123 SHEET 7 A 8 SER A 152 ILE A 162 -1 O SER A 152 N GLU A 143 SHEET 8 A 8 LYS A 8 VAL A 11 1 N VAL A 11 O GLU A 161 SHEET 1 B 2 PHE A 58 GLU A 60 0 SHEET 2 B 2 TRP A 68 LEU A 70 -1 O PHE A 69 N ASP A 59 SHEET 1 C 8 LYS B 8 VAL B 11 0 SHEET 2 C 8 VAL B 47 VAL B 56 1 O VAL B 50 N VAL B 10 SHEET 3 C 8 VAL B 36 TRP B 43 -1 N SER B 42 O ASP B 49 SHEET 4 C 8 ARG B 90 HIS B 96 -1 O TYR B 95 N GLY B 37 SHEET 5 C 8 VAL B 120 ILE B 124 1 O ILE B 124 N HIS B 96 SHEET 6 C 8 THR B 135 GLU B 143 -1 O GLU B 136 N ILE B 123 SHEET 7 C 8 SER B 152 ILE B 162 -1 O THR B 154 N VAL B 141 SHEET 8 C 8 LYS B 8 VAL B 11 1 N VAL B 11 O GLU B 161 SHEET 1 D 2 PHE B 58 GLU B 60 0 SHEET 2 D 2 TRP B 68 LEU B 70 -1 O PHE B 69 N ASP B 59 CISPEP 1 GLY A 98 PRO A 99 0 3.75 CISPEP 2 GLY A 132 LEU A 133 0 17.05 CISPEP 3 THR A 182 THR A 183 0 16.81 CISPEP 4 GLY B 98 PRO B 99 0 3.85 CISPEP 5 GLY B 132 LEU B 133 0 19.59 SITE 1 AC1 10 GLU A 156 HIS A 157 HOH A2010 HOH A2034 SITE 2 AC1 10 LEU B 133 THR B 135 GLU B 136 SER B 160 SITE 3 AC1 10 HOH B2015 HOH B2083 SITE 1 AC2 8 LEU A 133 THR A 135 GLU A 136 HOH A2011 SITE 2 AC2 8 GLU B 156 HIS B 157 HOH B2084 HOH B2091 SITE 1 AC3 11 GLU A 136 TYR A 138 HIS A 157 GLU B 136 SITE 2 AC3 11 TYR B 138 HIS B 157 HOH B2007 HOH B2090 SITE 3 AC3 11 HOH B2095 HOH B2136 HOH B2146 SITE 1 AC4 24 LYS A 33 ARG A 34 PRO A 57 PHE A 58 SITE 2 AC4 24 ASP A 59 GLU A 60 PHE A 69 ASP A 71 SITE 3 AC4 24 TYR A 74 LYS A 84 GLY A 98 HIS A 102 SITE 4 AC4 24 PGE A2007 HOH A2081 HOH A2082 HOH A2096 SITE 5 AC4 24 HOH A2124 HOH A2135 HOH A2141 PRO B 57 SITE 6 AC4 24 ASP B 59 PHE B 69 ASP B 71 HOH B2115 SITE 1 AC5 13 PHE B 23 THR B 97 PRO B 99 ILE B 123 SITE 2 AC5 13 ASP B 125 VAL B 126 LYS B 127 PRO B 134 SITE 3 AC5 13 THR B 135 GLU B 136 PGE B2006 HOH B2100 SITE 4 AC5 13 HOH B2149 SITE 1 AC6 14 PHE A 23 THR A 97 PRO A 99 ILE A 123 SITE 2 AC6 14 ILE A 124 ASP A 125 VAL A 126 LYS A 127 SITE 3 AC6 14 PRO A 134 GLU A 136 PGE A2007 HOH A2097 SITE 4 AC6 14 HOH A2121 HOH A2144 SITE 1 AC7 7 ILE A 26 VAL A 29 GLY A 30 ASN A 31 SITE 2 AC7 7 LYS A 83 LYS A 84 ASN A 86 SITE 1 AC8 4 VAL B 29 LYS B 83 LYS B 84 ASN B 86 SITE 1 AC9 5 PHE B 23 ASN B 31 GLN B 32 LYS B 33 SITE 2 AC9 5 ETE B2002 SITE 1 BC1 7 PHE A 23 ASN A 31 GLN A 32 LYS A 33 SITE 2 BC1 7 PRO A 99 12P A2001 PG4 A2003 CRYST1 114.103 95.289 58.988 90.00 121.13 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008764 0.000000 0.005293 0.00000 SCALE2 0.000000 0.010494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019805 0.00000