data_2OB7 # _entry.id 2OB7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OB7 pdb_00002ob7 10.2210/pdb2ob7/pdb RCSB RCSB040916 ? ? WWPDB D_1000040916 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-23 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' em_image_scans 2 4 'Structure model' em_software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' em_3d_fitting_list 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_em_software.image_processing_id' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_em_3d_fitting_list.accession_code' 5 5 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 6 5 'Structure model' '_em_3d_fitting_list.source_name' 7 5 'Structure model' '_em_3d_fitting_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2OB7 _pdbx_database_status.recvd_initial_deposition_date 2006-12-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1PV6 'Crystal structure of complex formed by SmpB and TLD of tmRNA.' unspecified PDB 1N34 'X-ray structure of 30S subunit from T. thermophilus (only helix 44 deposited here, for positional reference)' unspecified EMDB EMD-1310 'Stalled 70S ribosome (i.e., without any codon in A site) bound with SmpB' 'other EM volume' EMDB EMD-1311 ;Pre-accommodated ribosomal trans-translation complex: T. thermophilus 70S-mRNA-(P-site tRNA)-tmRNA-(SmpB)2-(EF-Tu)-GDP-kirromycin in the presence of protein S1 ; 'associated EM volume' EMDB EMD-1312 ;Pre-accommodated ribosomal trans-translation complex: T. thermophilus 70S-mRNA-(P-site tRNA)-tmRNA-(SmpB)2-(EF-Tu)-GDP-kirromycin in the absence of protein S1 ; 'other EM volume' PDB 1Q2B ;X-ray structure of EF-Tu fitted into pre-accommodated ribosomal translation complex, placed in the ribosomal enrivonment by reference to S12 and helix 44 of the small subunit, and helix 69 and GAC of the large subunit (1QZC) ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Frank, J.' 1 'Felden, B.' 2 'Gillet, R.' 3 'Li, W.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Scaffolding as an organizing principle in trans-translation. The roles of small protein B and ribosomal protein S1.' J.Biol.Chem. 282 6356 6363 2007 JBCHA3 US 0021-9258 0071 ? 17179154 10.1074/jbc.M609658200 1 'Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome' Proc.Natl.Acad.Sci.USA 103 16484 16489 2006 PNASA6 US 0027-8424 0040 ? ? ? 2 'Visualizing tmRNA entry into a stalled ribosome' Science 300 127 130 2003 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gillet, R.' 1 ? primary 'Kaur, S.' 2 ? primary 'Li, W.' 3 ? primary 'Hallier, M.' 4 ? primary 'Felden, B.' 5 ? primary 'Frank, J.' 6 ? 1 'Kaur, S.' 7 ? 1 'Gillet, R.' 8 ? 1 'Li, W.' 9 ? 1 'Gursky, R.' 10 ? 1 'Frank, J.' 11 ? 2 'Valle, M.' 12 ? 2 'Gillet, R.' 13 ? 2 'Kaur, K.' 14 ? 2 'Henne, A.' 15 ? 2 'Ramakrishnan, V.' 16 ? 2 'Frank, J.' 17 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'transfer-messenger RNA' 105728.523 1 ? ? ? ? 2 polymer nat '16S ribosomal RNA' 27987.715 1 ? ? ? 'helix 44 of 30S ribosomal subunit' 3 polymer nat 'SsrA-binding protein' 18440.818 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no ;GGCGCGUAUUCGACGGGGACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAACGGCAUAACUGCCAA CACCAACUACGCUCUGGCAGCUUAAUAACCUGCUUACCUCUCUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGAGG UCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAUCAGGCUGUUUGUUAGUGGCGU GUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGACCGAGGACCUCGGACGCGGGUUCGAUUCCCGCAC GCGCCUCC ; ;GGCGCGUAUUCGACGGGGACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAACGGCAUAACUGCCAA CACCAACUACGCUCUGGCAGCUUAAUAACCUGCUUACCUCUCUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGAGG UCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAUCAGGCUGUUUGUUAGUGGCGU GUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGACCGAGGACCUCGGACGCGGGUUCGAUUCCCGCAC GCGCCUCC ; A ? 2 polyribonucleotide no no ;UCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGC GAAGUC ; ;UCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGC GAAGUC ; D ? 3 'polypeptide(L)' no no ;GKSDKIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPL RKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWKNNKVKVLIALAKGKKLYDRRRELKEKAMKRELEREFKGKIHL ; ;GKSDKIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPL RKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWKNNKVKVLIALAKGKKLYDRRRELKEKAMKRELEREFKGKIHL ; B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 C n 1 6 G n 1 7 U n 1 8 A n 1 9 U n 1 10 U n 1 11 C n 1 12 G n 1 13 A n 1 14 C n 1 15 G n 1 16 G n 1 17 G n 1 18 G n 1 19 A n 1 20 C n 1 21 C n 1 22 C n 1 23 A n 1 24 A n 1 25 G n 1 26 G n 1 27 U n 1 28 G n 1 29 C n 1 30 A n 1 31 U n 1 32 G n 1 33 C n 1 34 C n 1 35 G n 1 36 A n 1 37 G n 1 38 G n 1 39 G n 1 40 G n 1 41 C n 1 42 G n 1 43 G n 1 44 U n 1 45 U n 1 46 G n 1 47 G n 1 48 C n 1 49 C n 1 50 U n 1 51 C n 1 52 G n 1 53 U n 1 54 A n 1 55 A n 1 56 A n 1 57 A n 1 58 A n 1 59 G n 1 60 C n 1 61 C n 1 62 G n 1 63 C n 1 64 A n 1 65 A n 1 66 C n 1 67 G n 1 68 G n 1 69 C n 1 70 A n 1 71 U n 1 72 A n 1 73 A n 1 74 C n 1 75 U n 1 76 G n 1 77 C n 1 78 C n 1 79 A n 1 80 A n 1 81 C n 1 82 A n 1 83 C n 1 84 C n 1 85 A n 1 86 A n 1 87 C n 1 88 U n 1 89 A n 1 90 C n 1 91 G n 1 92 C n 1 93 U n 1 94 C n 1 95 U n 1 96 G n 1 97 G n 1 98 C n 1 99 A n 1 100 G n 1 101 C n 1 102 U n 1 103 U n 1 104 A n 1 105 A n 1 106 U n 1 107 A n 1 108 A n 1 109 C n 1 110 C n 1 111 U n 1 112 G n 1 113 C n 1 114 U n 1 115 U n 1 116 A n 1 117 C n 1 118 C n 1 119 U n 1 120 C n 1 121 U n 1 122 C n 1 123 U n 1 124 C n 1 125 C n 1 126 C n 1 127 U n 1 128 A n 1 129 G n 1 130 C n 1 131 C n 1 132 U n 1 133 C n 1 134 C n 1 135 G n 1 136 C n 1 137 U n 1 138 C n 1 139 U n 1 140 U n 1 141 A n 1 142 G n 1 143 G n 1 144 A n 1 145 C n 1 146 G n 1 147 G n 1 148 G n 1 149 G n 1 150 A n 1 151 U n 1 152 C n 1 153 A n 1 154 A n 1 155 G n 1 156 A n 1 157 G n 1 158 A n 1 159 G n 1 160 G n 1 161 U n 1 162 C n 1 163 A n 1 164 A n 1 165 A n 1 166 C n 1 167 C n 1 168 C n 1 169 A n 1 170 A n 1 171 A n 1 172 A n 1 173 G n 1 174 A n 1 175 G n 1 176 A n 1 177 U n 1 178 C n 1 179 G n 1 180 C n 1 181 G n 1 182 U n 1 183 G n 1 184 G n 1 185 A n 1 186 A n 1 187 G n 1 188 C n 1 189 C n 1 190 C n 1 191 U n 1 192 G n 1 193 C n 1 194 C n 1 195 U n 1 196 G n 1 197 G n 1 198 G n 1 199 G n 1 200 U n 1 201 U n 1 202 G n 1 203 A n 1 204 A n 1 205 G n 1 206 C n 1 207 G n 1 208 U n 1 209 U n 1 210 A n 1 211 A n 1 212 A n 1 213 A n 1 214 C n 1 215 U n 1 216 U n 1 217 A n 1 218 A n 1 219 U n 1 220 C n 1 221 A n 1 222 G n 1 223 G n 1 224 C n 1 225 U n 1 226 G n 1 227 U n 1 228 U n 1 229 U n 1 230 G n 1 231 U n 1 232 U n 1 233 A n 1 234 G n 1 235 U n 1 236 G n 1 237 G n 1 238 C n 1 239 G n 1 240 U n 1 241 G n 1 242 U n 1 243 C n 1 244 C n 1 245 G n 1 246 U n 1 247 C n 1 248 C n 1 249 G n 1 250 C n 1 251 A n 1 252 G n 1 253 C n 1 254 U n 1 255 G n 1 256 G n 1 257 C n 1 258 A n 1 259 A n 1 260 G n 1 261 C n 1 262 G n 1 263 A n 1 264 A n 1 265 U n 1 266 G n 1 267 U n 1 268 A n 1 269 A n 1 270 A n 1 271 G n 1 272 A n 1 273 C n 1 274 U n 1 275 G n 1 276 A n 1 277 C n 1 278 U n 1 279 A n 1 280 A n 1 281 G n 1 282 C n 1 283 A n 1 284 U n 1 285 G n 1 286 A n 1 287 C n 1 288 C n 1 289 G n 1 290 A n 1 291 G n 1 292 G n 1 293 A n 1 294 C n 1 295 C n 1 296 U n 1 297 C n 1 298 G n 1 299 G n 1 300 A n 1 301 C n 1 302 G n 1 303 C n 1 304 G n 1 305 G n 1 306 G n 1 307 U n 1 308 U n 1 309 C n 1 310 G n 1 311 A n 1 312 U n 1 313 U n 1 314 C n 1 315 C n 1 316 C n 1 317 G n 1 318 C n 1 319 A n 1 320 C n 1 321 G n 1 322 C n 1 323 G n 1 324 C n 1 325 C n 1 326 U n 1 327 C n 1 328 C n 2 1 U n 2 2 C n 2 3 A n 2 4 C n 2 5 G n 2 6 C n 2 7 C n 2 8 A n 2 9 U n 2 10 G n 2 11 G n 2 12 G n 2 13 A n 2 14 G n 2 15 C n 2 16 G n 2 17 G n 2 18 G n 2 19 C n 2 20 U n 2 21 C n 2 22 U n 2 23 A n 2 24 C n 2 25 C n 2 26 C n 2 27 G n 2 28 A n 2 29 A n 2 30 G n 2 31 U n 2 32 C n 2 33 G n 2 34 C n 2 35 C n 2 36 G n 2 37 G n 2 38 G n 2 39 A n 2 40 G n 2 41 C n 2 42 C n 2 43 U n 2 44 A n 2 45 C n 2 46 G n 2 47 G n 2 48 G n 2 49 C n 2 50 A n 2 51 G n 2 52 G n 2 53 C n 2 54 G n 2 55 C n 2 56 C n 2 57 G n 2 58 A n 2 59 G n 2 60 G n 2 61 G n 2 62 U n 2 63 A n 2 64 G n 2 65 G n 2 66 G n 2 67 C n 2 68 C n 2 69 C n 2 70 G n 2 71 U n 2 72 G n 2 73 A n 2 74 C n 2 75 U n 2 76 G n 2 77 G n 2 78 G n 2 79 G n 2 80 C n 2 81 G n 2 82 A n 2 83 A n 2 84 G n 2 85 U n 2 86 C n 3 1 GLY n 3 2 LYS n 3 3 SER n 3 4 ASP n 3 5 LYS n 3 6 ILE n 3 7 ILE n 3 8 PRO n 3 9 ILE n 3 10 ALA n 3 11 GLU n 3 12 ASN n 3 13 LYS n 3 14 GLU n 3 15 ALA n 3 16 LYS n 3 17 ALA n 3 18 LYS n 3 19 TYR n 3 20 ASP n 3 21 ILE n 3 22 LEU n 3 23 GLU n 3 24 THR n 3 25 TYR n 3 26 GLU n 3 27 ALA n 3 28 GLY n 3 29 ILE n 3 30 VAL n 3 31 LEU n 3 32 LYS n 3 33 GLY n 3 34 SER n 3 35 GLU n 3 36 VAL n 3 37 LYS n 3 38 SER n 3 39 LEU n 3 40 ARG n 3 41 GLU n 3 42 LYS n 3 43 GLY n 3 44 THR n 3 45 VAL n 3 46 SER n 3 47 PHE n 3 48 LYS n 3 49 ASP n 3 50 SER n 3 51 PHE n 3 52 VAL n 3 53 ARG n 3 54 ILE n 3 55 GLU n 3 56 ASN n 3 57 GLY n 3 58 GLU n 3 59 ALA n 3 60 TRP n 3 61 LEU n 3 62 TYR n 3 63 ASN n 3 64 LEU n 3 65 TYR n 3 66 ILE n 3 67 ALA n 3 68 PRO n 3 69 TYR n 3 70 LYS n 3 71 HIS n 3 72 ALA n 3 73 THR n 3 74 ILE n 3 75 GLU n 3 76 ASN n 3 77 HIS n 3 78 ASP n 3 79 PRO n 3 80 LEU n 3 81 ARG n 3 82 LYS n 3 83 ARG n 3 84 LYS n 3 85 LEU n 3 86 LEU n 3 87 LEU n 3 88 HIS n 3 89 LYS n 3 90 ARG n 3 91 GLU n 3 92 ILE n 3 93 MET n 3 94 ARG n 3 95 LEU n 3 96 TYR n 3 97 GLY n 3 98 LYS n 3 99 VAL n 3 100 GLN n 3 101 GLU n 3 102 LYS n 3 103 GLY n 3 104 TYR n 3 105 THR n 3 106 ILE n 3 107 ILE n 3 108 PRO n 3 109 LEU n 3 110 LYS n 3 111 LEU n 3 112 TYR n 3 113 TRP n 3 114 LYS n 3 115 ASN n 3 116 ASN n 3 117 LYS n 3 118 VAL n 3 119 LYS n 3 120 VAL n 3 121 LEU n 3 122 ILE n 3 123 ALA n 3 124 LEU n 3 125 ALA n 3 126 LYS n 3 127 GLY n 3 128 LYS n 3 129 LYS n 3 130 LEU n 3 131 TYR n 3 132 ASP n 3 133 ARG n 3 134 ARG n 3 135 ARG n 3 136 GLU n 3 137 LEU n 3 138 LYS n 3 139 GLU n 3 140 LYS n 3 141 ALA n 3 142 MET n 3 143 LYS n 3 144 ARG n 3 145 GLU n 3 146 LEU n 3 147 GLU n 3 148 ARG n 3 149 GLU n 3 150 PHE n 3 151 LYS n 3 152 GLY n 3 153 LYS n 3 154 ILE n 3 155 HIS n 3 156 LEU n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Thermus thermophilus' 274 Thermus ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Thermus thermophilus' 274 Thermus ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? ? 'Thermus thermophilus' 274 Thermus ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 A 8 14 14 A A A . n A 1 9 U 9 15 15 U U A . n A 1 10 U 10 16 16 U U A . n A 1 11 C 11 17 17 C C A . n A 1 12 G 12 18 18 G G A . n A 1 13 A 13 19 19 A A A . n A 1 14 C 14 20 20 C C A . n A 1 15 G 15 21 21 G G A . n A 1 16 G 16 22 22 G G A . n A 1 17 G 17 23 23 G G A . n A 1 18 G 18 24 24 G G A . n A 1 19 A 19 25 25 A A A . n A 1 20 C 20 35 35 C C A . n A 1 21 C 21 36 36 C C A . n A 1 22 C 22 37 37 C C A . n A 1 23 A 23 38 38 A A A . n A 1 24 A 24 39 39 A A A . n A 1 25 G 25 40 40 G G A . n A 1 26 G 26 41 41 G G A . n A 1 27 U 27 42 42 U U A . n A 1 28 G 28 43 43 G G A . n A 1 29 C 29 44 44 C C A . n A 1 30 A 30 45 45 A A A . n A 1 31 U 31 46 46 U U A . n A 1 32 G 32 47 47 G G A . n A 1 33 C 33 48 48 C C A . n A 1 34 C 34 49 49 C C A . n A 1 35 G 35 50 50 G G A . n A 1 36 A 36 51 51 A A A . n A 1 37 G 37 52 52 G G A . n A 1 38 G 38 53 53 G G A . n A 1 39 G 39 54 54 G G A . n A 1 40 G 40 55 55 G G A . n A 1 41 C 41 56 56 C C A . n A 1 42 G 42 57 57 G G A . n A 1 43 G 43 58 58 G G A . n A 1 44 U 44 59 59 U U A . n A 1 45 U 45 60 60 U U A . n A 1 46 G 46 61 61 G G A . n A 1 47 G 47 62 62 G G A . n A 1 48 C 48 63 63 C C A . n A 1 49 C 49 64 64 C C A . n A 1 50 U 50 65 65 U U A . n A 1 51 C 51 66 66 C C A . n A 1 52 G 52 67 67 G G A . n A 1 53 U 53 68 68 U U A . n A 1 54 A 54 69 69 A A A . n A 1 55 A 55 70 70 A A A . n A 1 56 A 56 71 71 A A A . n A 1 57 A 57 72 72 A A A . n A 1 58 A 58 73 73 A A A . n A 1 59 G 59 74 74 G G A . n A 1 60 C 60 75 75 C C A . n A 1 61 C 61 76 76 C C A . n A 1 62 G 62 77 77 G G A . n A 1 63 C 63 78 78 C C A . n A 1 64 A 64 79 79 A A A . n A 1 65 A 65 80 80 A A A . n A 1 66 C 66 81 81 C C A . n A 1 67 G 67 82 82 G G A . n A 1 68 G 68 83 83 G G A . n A 1 69 C 69 84 84 C C A . n A 1 70 A 70 85 85 A A A . n A 1 71 U 71 86 86 U U A . n A 1 72 A 72 87 87 A A A . n A 1 73 A 73 88 88 A A A . n A 1 74 C 74 89 89 C C A . n A 1 75 U 75 90 90 U U A . n A 1 76 G 76 91 91 G G A . n A 1 77 C 77 92 92 C C A . n A 1 78 C 78 93 93 C C A . n A 1 79 A 79 94 94 A A A . n A 1 80 A 80 95 95 A A A . n A 1 81 C 81 96 96 C C A . n A 1 82 A 82 97 97 A A A . n A 1 83 C 83 98 98 C C A . n A 1 84 C 84 99 99 C C A . n A 1 85 A 85 100 100 A A A . n A 1 86 A 86 101 101 A A A . n A 1 87 C 87 102 102 C C A . n A 1 88 U 88 103 103 U U A . n A 1 89 A 89 104 104 A A A . n A 1 90 C 90 105 105 C C A . n A 1 91 G 91 106 106 G G A . n A 1 92 C 92 107 107 C C A . n A 1 93 U 93 108 108 U U A . n A 1 94 C 94 109 109 C C A . n A 1 95 U 95 112 112 U U A . n A 1 96 G 96 113 113 G G A . n A 1 97 G 97 114 114 G G A . n A 1 98 C 98 115 115 C C A . n A 1 99 A 99 116 116 A A A . n A 1 100 G 100 117 117 G G A . n A 1 101 C 101 118 118 C C A . n A 1 102 U 102 119 119 U U A . n A 1 103 U 103 120 120 U U A . n A 1 104 A 104 121 121 A A A . n A 1 105 A 105 122 122 A A A . n A 1 106 U 106 123 123 U U A . n A 1 107 A 107 124 124 A A A . n A 1 108 A 108 125 125 A A A . n A 1 109 C 109 126 126 C C A . n A 1 110 C 110 127 127 C C A . n A 1 111 U 111 128 128 U U A . n A 1 112 G 112 129 129 G G A . n A 1 113 C 113 130 130 C C A . n A 1 114 U 114 131 131 U U A . n A 1 115 U 115 132 132 U U A . n A 1 116 A 116 133 133 A A A . n A 1 117 C 117 138 138 C C A . n A 1 118 C 118 139 139 C C A . n A 1 119 U 119 140 140 U U A . n A 1 120 C 120 141 141 C C A . n A 1 121 U 121 142 142 U U A . n A 1 122 C 122 143 143 C C A . n A 1 123 U 123 144 144 U U A . n A 1 124 C 124 145 145 C C A . n A 1 125 C 125 146 146 C C A . n A 1 126 C 126 147 147 C C A . n A 1 127 U 127 148 148 U U A . n A 1 128 A 128 149 149 A A A . n A 1 129 G 129 150 150 G G A . n A 1 130 C 130 151 151 C C A . n A 1 131 C 131 152 152 C C A . n A 1 132 U 132 153 153 U U A . n A 1 133 C 133 154 154 C C A . n A 1 134 C 134 155 155 C C A . n A 1 135 G 135 156 156 G G A . n A 1 136 C 136 157 157 C C A . n A 1 137 U 137 158 158 U U A . n A 1 138 C 138 159 159 C C A . n A 1 139 U 139 160 160 U U A . n A 1 140 U 140 161 161 U U A . n A 1 141 A 141 162 162 A A A . n A 1 142 G 142 163 163 G G A . n A 1 143 G 143 164 164 G G A . n A 1 144 A 144 165 165 A A A . n A 1 145 C 145 166 166 C C A . n A 1 146 G 146 167 167 G G A . n A 1 147 G 147 168 168 G G A . n A 1 148 G 148 169 169 G G A . n A 1 149 G 149 170 170 G G A . n A 1 150 A 150 171 171 A A A . n A 1 151 U 151 172 172 U U A . n A 1 152 C 152 173 173 C C A . n A 1 153 A 153 174 174 A A A . n A 1 154 A 154 175 175 A A A . n A 1 155 G 155 176 176 G G A . n A 1 156 A 156 177 177 A A A . n A 1 157 G 157 178 178 G G A . n A 1 158 A 158 179 179 A A A . n A 1 159 G 159 180 180 G G A . n A 1 160 G 160 181 181 G G A . n A 1 161 U 161 182 182 U U A . n A 1 162 C 162 183 183 C C A . n A 1 163 A 163 184 184 A A A . n A 1 164 A 164 185 185 A A A . n A 1 165 A 165 186 186 A A A . n A 1 166 C 166 187 187 C C A . n A 1 167 C 167 188 188 C C A . n A 1 168 C 168 189 189 C C A . n A 1 169 A 169 190 190 A A A . n A 1 170 A 170 191 191 A A A . n A 1 171 A 171 192 192 A A A . n A 1 172 A 172 193 193 A A A . n A 1 173 G 173 194 194 G G A . n A 1 174 A 174 195 195 A A A . n A 1 175 G 175 196 196 G G A . n A 1 176 A 176 197 197 A A A . n A 1 177 U 177 198 198 U U A . n A 1 178 C 178 199 199 C C A . n A 1 179 G 179 200 200 G G A . n A 1 180 C 180 201 201 C C A . n A 1 181 G 181 202 202 G G A . n A 1 182 U 182 203 203 U U A . n A 1 183 G 183 204 204 G G A . n A 1 184 G 184 205 205 G G A . n A 1 185 A 185 206 206 A A A . n A 1 186 A 186 207 207 A A A . n A 1 187 G 187 208 208 G G A . n A 1 188 C 188 209 209 C C A . n A 1 189 C 189 210 210 C C A . n A 1 190 C 190 211 211 C C A . n A 1 191 U 191 212 212 U U A . n A 1 192 G 192 213 213 G G A . n A 1 193 C 193 214 214 C C A . n A 1 194 C 194 215 215 C C A . n A 1 195 U 195 216 216 U U A . n A 1 196 G 196 217 217 G G A . n A 1 197 G 197 218 218 G G A . n A 1 198 G 198 219 219 G G A . n A 1 199 G 199 220 220 G G A . n A 1 200 U 200 221 221 U U A . n A 1 201 U 201 222 222 U U A . n A 1 202 G 202 223 223 G G A . n A 1 203 A 203 224 224 A A A . n A 1 204 A 204 225 225 A A A . n A 1 205 G 205 226 226 G G A . n A 1 206 C 206 227 227 C C A . n A 1 207 G 207 228 228 G G A . n A 1 208 U 208 229 229 U U A . n A 1 209 U 209 230 230 U U A . n A 1 210 A 210 231 231 A A A . n A 1 211 A 211 232 232 A A A . n A 1 212 A 212 233 233 A A A . n A 1 213 A 213 234 234 A A A . n A 1 214 C 214 235 235 C C A . n A 1 215 U 215 236 236 U U A . n A 1 216 U 216 237 237 U U A . n A 1 217 A 217 238 238 A A A . n A 1 218 A 218 239 239 A A A . n A 1 219 U 219 240 240 U U A . n A 1 220 C 220 241 241 C C A . n A 1 221 A 221 242 242 A A A . n A 1 222 G 222 243 243 G G A . n A 1 223 G 223 244 244 G G A . n A 1 224 C 224 245 245 C C A . n A 1 225 U 225 246 246 U U A . n A 1 226 G 226 248 248 G G A . n A 1 227 U 227 249 249 U U A . n A 1 228 U 228 250 250 U U A . n A 1 229 U 229 251 251 U U A . n A 1 230 G 230 252 252 G G A . n A 1 231 U 231 253 253 U U A . n A 1 232 U 232 254 254 U U A . n A 1 233 A 233 255 255 A A A . n A 1 234 G 234 256 256 G G A . n A 1 235 U 235 257 257 U U A . n A 1 236 G 236 258 258 G G A . n A 1 237 G 237 259 259 G G A . n A 1 238 C 238 260 260 C C A . n A 1 239 G 239 261 261 G G A . n A 1 240 U 240 262 262 U U A . n A 1 241 G 241 263 263 G G A . n A 1 242 U 242 264 264 U U A . n A 1 243 C 243 265 265 C C A . n A 1 244 C 244 266 266 C C A . n A 1 245 G 245 267 267 G G A . n A 1 246 U 246 268 268 U U A . n A 1 247 C 247 269 269 C C A . n A 1 248 C 248 270 270 C C A . n A 1 249 G 249 271 271 G G A . n A 1 250 C 250 272 272 C C A . n A 1 251 A 251 273 273 A A A . n A 1 252 G 252 274 274 G G A . n A 1 253 C 253 275 275 C C A . n A 1 254 U 254 276 276 U U A . n A 1 255 G 255 277 277 G G A . n A 1 256 G 256 278 278 G G A . n A 1 257 C 257 279 279 C C A . n A 1 258 A 258 280 280 A A A . n A 1 259 A 259 281 281 A A A . n A 1 260 G 260 282 282 G G A . n A 1 261 C 261 283 283 C C A . n A 1 262 G 262 284 284 G G A . n A 1 263 A 263 285 285 A A A . n A 1 264 A 264 286 286 A A A . n A 1 265 U 265 287 287 U U A . n A 1 266 G 266 288 288 G G A . n A 1 267 U 267 289 289 U U A . n A 1 268 A 268 290 290 A A A . n A 1 269 A 269 291 291 A A A . n A 1 270 A 270 292 292 A A A . n A 1 271 G 271 293 293 G G A . n A 1 272 A 272 294 294 A A A . n A 1 273 C 273 295 295 C C A . n A 1 274 U 274 296 296 U U A . n A 1 275 G 275 297 297 G G A . n A 1 276 A 276 298 298 A A A . n A 1 277 C 277 299 299 C C A . n A 1 278 U 278 300 300 U U A . n A 1 279 A 279 301 301 A A A . n A 1 280 A 280 302 302 A A A . n A 1 281 G 281 303 303 G G A . n A 1 282 C 282 304 304 C C A . n A 1 283 A 283 305 305 A A A . n A 1 284 U 284 306 306 U U A . n A 1 285 G 285 307 307 G G A . n A 1 286 A 286 312 312 A A A . n A 1 287 C 287 313 313 C C A . n A 1 288 C 288 314 314 C C A . n A 1 289 G 289 315 315 G G A . n A 1 290 A 290 316 316 A A A . n A 1 291 G 291 317 317 G G A . n A 1 292 G 292 318 318 G G A . n A 1 293 A 293 319 319 A A A . n A 1 294 C 294 328 328 C C A . n A 1 295 C 295 329 329 C C A . n A 1 296 U 296 330 330 U U A . n A 1 297 C 297 331 331 C C A . n A 1 298 G 298 332 332 G G A . n A 1 299 G 299 333 333 G G A . n A 1 300 A 300 334 334 A A A . n A 1 301 C 301 335 335 C C A . n A 1 302 G 302 336 336 G G A . n A 1 303 C 303 337 337 C C A . n A 1 304 G 304 338 338 G G A . n A 1 305 G 305 339 339 G G A . n A 1 306 G 306 340 340 G G A . n A 1 307 U 307 341 341 U U A . n A 1 308 U 308 342 342 U U A . n A 1 309 C 309 343 343 C C A . n A 1 310 G 310 344 344 G G A . n A 1 311 A 311 345 345 A A A . n A 1 312 U 312 346 346 U U A . n A 1 313 U 313 347 347 U U A . n A 1 314 C 314 348 348 C C A . n A 1 315 C 315 349 349 C C A . n A 1 316 C 316 350 350 C C A . n A 1 317 G 317 351 351 G G A . n A 1 318 C 318 352 352 C C A . n A 1 319 A 319 353 353 A A A . n A 1 320 C 320 354 354 C C A . n A 1 321 G 321 355 355 G G A . n A 1 322 C 322 356 356 C C A . n A 1 323 G 323 357 357 G G A . n A 1 324 C 324 358 358 C C A . n A 1 325 C 325 359 359 C C A . n A 1 326 U 326 360 360 U U A . n A 1 327 C 327 361 361 C C A . n A 1 328 C 328 362 362 C C A . n B 2 1 U 1 1406 1406 U U D . n B 2 2 C 2 1407 1407 C C D . n B 2 3 A 3 1408 1408 A A D . n B 2 4 C 4 1409 1409 C C D . n B 2 5 G 5 1410 1410 G G D . n B 2 6 C 6 1411 1411 C C D . n B 2 7 C 7 1412 1412 C C D . n B 2 8 A 8 1413 1413 A A D . n B 2 9 U 9 1414 1414 U U D . n B 2 10 G 10 1415 1415 G G D . n B 2 11 G 11 1416 1416 G G D . n B 2 12 G 12 1417 1417 G G D . n B 2 13 A 13 1418 1418 A A D . n B 2 14 G 14 1419 1419 G G D . n B 2 15 C 15 1420 1420 C C D . n B 2 16 G 16 1421 1421 G G D . n B 2 17 G 17 1422 1422 G G D . n B 2 18 G 18 1423 1423 G G D . n B 2 19 C 19 1424 1424 C C D . n B 2 20 U 20 1425 1425 U U D . n B 2 21 C 21 1426 1426 C C D . n B 2 22 U 22 1427 1427 U U D . n B 2 23 A 23 1428 1428 A A D . n B 2 24 C 24 1429 1429 C C D . n B 2 25 C 25 1430 1430 C C D . n B 2 26 C 26 1431 1431 C C D . n B 2 27 G 27 1432 1432 G G D . n B 2 28 A 28 1433 1433 A A D . n B 2 29 A 29 1434 1434 A A D . n B 2 30 G 30 1435 1435 G G D . n B 2 31 U 31 1436 1436 U U D . n B 2 32 C 32 1437 1437 C C D . n B 2 33 G 33 1438 1438 G G D . n B 2 34 C 34 1439 1439 C C D . n B 2 35 C 35 1440 1440 C C D . n B 2 36 G 36 1441 1441 G G D . n B 2 37 G 37 1442 1442 G G D . n B 2 38 G 38 1443 1443 G G D . n B 2 39 A 39 1446 1446 A A D . n B 2 40 G 40 1447 1447 G G D . n B 2 41 C 41 1448 1448 C C D . n B 2 42 C 42 1449 1449 C C D . n B 2 43 U 43 1450 1450 U U D . n B 2 44 A 44 1451 1451 A A D . n B 2 45 C 45 1452 1452 C C D . n B 2 46 G 46 1453 1453 G G D . n B 2 47 G 47 1454 1454 G G D . n B 2 48 G 48 1455 1455 G G D . n B 2 49 C 49 1459 1459 C C D . n B 2 50 A 50 1460 1460 A A D . n B 2 51 G 51 1461 1461 G G D . n B 2 52 G 52 1462 1462 G G D . n B 2 53 C 53 1463 1463 C C D . n B 2 54 G 54 1464 1464 G G D . n B 2 55 C 55 1465 1465 C C D . n B 2 56 C 56 1466 1466 C C D . n B 2 57 G 57 1467 1467 G G D . n B 2 58 A 58 1468 1468 A A D . n B 2 59 G 59 1469 1469 G G D . n B 2 60 G 60 1470 1470 G G D . n B 2 61 G 61 1471 1471 G G D . n B 2 62 U 62 1472 1472 U U D . n B 2 63 A 63 1473 1473 A A D . n B 2 64 G 64 1474 1474 G G D . n B 2 65 G 65 1475 1475 G G D . n B 2 66 G 66 1476 1476 G G D . n B 2 67 C 67 1477 1477 C C D . n B 2 68 C 68 1478 1478 C C D . n B 2 69 C 69 1479 1479 C C D . n B 2 70 G 70 1480 1480 G G D . n B 2 71 U 71 1481 1481 U U D . n B 2 72 G 72 1482 1482 G G D . n B 2 73 A 73 1483 1483 A A D . n B 2 74 C 74 1484 1484 C C D . n B 2 75 U 75 1485 1485 U U D . n B 2 76 G 76 1486 1486 G G D . n B 2 77 G 77 1487 1487 G G D . n B 2 78 G 78 1488 1488 G G D . n B 2 79 G 79 1489 1489 G G D . n B 2 80 C 80 1490 1490 C C D . n B 2 81 G 81 1491 1491 G G D . n B 2 82 A 82 1492 1492 A A D . n B 2 83 A 83 1493 1493 A A D . n B 2 84 G 84 1494 1494 G G D . n B 2 85 U 85 1495 1495 U U D . n B 2 86 C 86 1496 1496 C C D . n C 3 1 GLY 1 1 ? ? ? B . n C 3 2 LYS 2 2 ? ? ? B . n C 3 3 SER 3 3 3 SER SER B . n C 3 4 ASP 4 4 4 ASP ASP B . n C 3 5 LYS 5 5 5 LYS LYS B . n C 3 6 ILE 6 6 6 ILE ILE B . n C 3 7 ILE 7 7 7 ILE ILE B . n C 3 8 PRO 8 8 8 PRO PRO B . n C 3 9 ILE 9 9 9 ILE ILE B . n C 3 10 ALA 10 10 10 ALA ALA B . n C 3 11 GLU 11 11 11 GLU GLU B . n C 3 12 ASN 12 12 12 ASN ASN B . n C 3 13 LYS 13 13 13 LYS LYS B . n C 3 14 GLU 14 14 14 GLU GLU B . n C 3 15 ALA 15 15 15 ALA ALA B . n C 3 16 LYS 16 16 16 LYS LYS B . n C 3 17 ALA 17 17 17 ALA ALA B . n C 3 18 LYS 18 18 18 LYS LYS B . n C 3 19 TYR 19 19 19 TYR TYR B . n C 3 20 ASP 20 20 20 ASP ASP B . n C 3 21 ILE 21 21 21 ILE ILE B . n C 3 22 LEU 22 22 22 LEU LEU B . n C 3 23 GLU 23 23 23 GLU GLU B . n C 3 24 THR 24 24 24 THR THR B . n C 3 25 TYR 25 25 25 TYR TYR B . n C 3 26 GLU 26 26 26 GLU GLU B . n C 3 27 ALA 27 27 27 ALA ALA B . n C 3 28 GLY 28 28 28 GLY GLY B . n C 3 29 ILE 29 29 29 ILE ILE B . n C 3 30 VAL 30 30 30 VAL VAL B . n C 3 31 LEU 31 31 31 LEU LEU B . n C 3 32 LYS 32 32 32 LYS LYS B . n C 3 33 GLY 33 33 33 GLY GLY B . n C 3 34 SER 34 34 34 SER SER B . n C 3 35 GLU 35 35 35 GLU GLU B . n C 3 36 VAL 36 36 36 VAL VAL B . n C 3 37 LYS 37 37 37 LYS LYS B . n C 3 38 SER 38 38 38 SER SER B . n C 3 39 LEU 39 39 39 LEU LEU B . n C 3 40 ARG 40 40 40 ARG ARG B . n C 3 41 GLU 41 41 41 GLU GLU B . n C 3 42 LYS 42 42 42 LYS LYS B . n C 3 43 GLY 43 43 43 GLY GLY B . n C 3 44 THR 44 44 44 THR THR B . n C 3 45 VAL 45 45 45 VAL VAL B . n C 3 46 SER 46 46 46 SER SER B . n C 3 47 PHE 47 47 47 PHE PHE B . n C 3 48 LYS 48 48 48 LYS LYS B . n C 3 49 ASP 49 49 49 ASP ASP B . n C 3 50 SER 50 50 50 SER SER B . n C 3 51 PHE 51 51 51 PHE PHE B . n C 3 52 VAL 52 52 52 VAL VAL B . n C 3 53 ARG 53 53 53 ARG ARG B . n C 3 54 ILE 54 54 54 ILE ILE B . n C 3 55 GLU 55 55 55 GLU GLU B . n C 3 56 ASN 56 56 56 ASN ASN B . n C 3 57 GLY 57 57 57 GLY GLY B . n C 3 58 GLU 58 58 58 GLU GLU B . n C 3 59 ALA 59 59 59 ALA ALA B . n C 3 60 TRP 60 60 60 TRP TRP B . n C 3 61 LEU 61 61 61 LEU LEU B . n C 3 62 TYR 62 62 62 TYR TYR B . n C 3 63 ASN 63 63 63 ASN ASN B . n C 3 64 LEU 64 64 64 LEU LEU B . n C 3 65 TYR 65 65 65 TYR TYR B . n C 3 66 ILE 66 66 66 ILE ILE B . n C 3 67 ALA 67 67 67 ALA ALA B . n C 3 68 PRO 68 68 68 PRO PRO B . n C 3 69 TYR 69 69 69 TYR TYR B . n C 3 70 LYS 70 70 ? ? ? B . n C 3 71 HIS 71 71 ? ? ? B . n C 3 72 ALA 72 72 ? ? ? B . n C 3 73 THR 73 73 ? ? ? B . n C 3 74 ILE 74 74 ? ? ? B . n C 3 75 GLU 75 75 ? ? ? B . n C 3 76 ASN 76 76 76 ASN ASN B . n C 3 77 HIS 77 77 77 HIS HIS B . n C 3 78 ASP 78 78 78 ASP ASP B . n C 3 79 PRO 79 79 79 PRO PRO B . n C 3 80 LEU 80 80 80 LEU LEU B . n C 3 81 ARG 81 81 81 ARG ARG B . n C 3 82 LYS 82 82 82 LYS LYS B . n C 3 83 ARG 83 83 83 ARG ARG B . n C 3 84 LYS 84 84 84 LYS LYS B . n C 3 85 LEU 85 85 85 LEU LEU B . n C 3 86 LEU 86 86 86 LEU LEU B . n C 3 87 LEU 87 87 87 LEU LEU B . n C 3 88 HIS 88 88 88 HIS HIS B . n C 3 89 LYS 89 89 89 LYS LYS B . n C 3 90 ARG 90 90 90 ARG ARG B . n C 3 91 GLU 91 91 91 GLU GLU B . n C 3 92 ILE 92 92 92 ILE ILE B . n C 3 93 MET 93 93 93 MET MET B . n C 3 94 ARG 94 94 94 ARG ARG B . n C 3 95 LEU 95 95 95 LEU LEU B . n C 3 96 TYR 96 96 96 TYR TYR B . n C 3 97 GLY 97 97 97 GLY GLY B . n C 3 98 LYS 98 98 98 LYS LYS B . n C 3 99 VAL 99 99 99 VAL VAL B . n C 3 100 GLN 100 100 100 GLN GLN B . n C 3 101 GLU 101 101 101 GLU GLU B . n C 3 102 LYS 102 102 102 LYS LYS B . n C 3 103 GLY 103 103 103 GLY GLY B . n C 3 104 TYR 104 104 104 TYR TYR B . n C 3 105 THR 105 105 105 THR THR B . n C 3 106 ILE 106 106 106 ILE ILE B . n C 3 107 ILE 107 107 107 ILE ILE B . n C 3 108 PRO 108 108 108 PRO PRO B . n C 3 109 LEU 109 109 109 LEU LEU B . n C 3 110 LYS 110 110 110 LYS LYS B . n C 3 111 LEU 111 111 111 LEU LEU B . n C 3 112 TYR 112 112 112 TYR TYR B . n C 3 113 TRP 113 113 113 TRP TRP B . n C 3 114 LYS 114 114 114 LYS LYS B . n C 3 115 ASN 115 115 115 ASN ASN B . n C 3 116 ASN 116 116 116 ASN ASN B . n C 3 117 LYS 117 117 117 LYS LYS B . n C 3 118 VAL 118 118 118 VAL VAL B . n C 3 119 LYS 119 119 119 LYS LYS B . n C 3 120 VAL 120 120 120 VAL VAL B . n C 3 121 LEU 121 121 121 LEU LEU B . n C 3 122 ILE 122 122 122 ILE ILE B . n C 3 123 ALA 123 123 123 ALA ALA B . n C 3 124 LEU 124 124 124 LEU LEU B . n C 3 125 ALA 125 125 125 ALA ALA B . n C 3 126 LYS 126 126 126 LYS LYS B . n C 3 127 GLY 127 127 127 GLY GLY B . n C 3 128 LYS 128 128 128 LYS LYS B . n C 3 129 LYS 129 129 129 LYS LYS B . n C 3 130 LEU 130 130 130 LEU LEU B . n C 3 131 TYR 131 131 ? ? ? B . n C 3 132 ASP 132 132 ? ? ? B . n C 3 133 ARG 133 133 ? ? ? B . n C 3 134 ARG 134 134 ? ? ? B . n C 3 135 ARG 135 135 ? ? ? B . n C 3 136 GLU 136 136 ? ? ? B . n C 3 137 LEU 137 137 ? ? ? B . n C 3 138 LYS 138 138 ? ? ? B . n C 3 139 GLU 139 139 ? ? ? B . n C 3 140 LYS 140 140 ? ? ? B . n C 3 141 ALA 141 141 ? ? ? B . n C 3 142 MET 142 142 ? ? ? B . n C 3 143 LYS 143 143 ? ? ? B . n C 3 144 ARG 144 144 ? ? ? B . n C 3 145 GLU 145 145 ? ? ? B . n C 3 146 LEU 146 146 ? ? ? B . n C 3 147 GLU 147 147 ? ? ? B . n C 3 148 ARG 148 148 ? ? ? B . n C 3 149 GLU 149 149 ? ? ? B . n C 3 150 PHE 150 150 ? ? ? B . n C 3 151 LYS 151 151 ? ? ? B . n C 3 152 GLY 152 152 ? ? ? B . n C 3 153 LYS 153 153 ? ? ? B . n C 3 154 ILE 154 154 ? ? ? B . n C 3 155 HIS 155 155 ? ? ? B . n C 3 156 LEU 156 156 ? ? ? B . n D 3 1 GLY 1 1 ? ? ? C . n D 3 2 LYS 2 2 ? ? ? C . n D 3 3 SER 3 3 3 SER SER C . n D 3 4 ASP 4 4 4 ASP ASP C . n D 3 5 LYS 5 5 5 LYS LYS C . n D 3 6 ILE 6 6 6 ILE ILE C . n D 3 7 ILE 7 7 7 ILE ILE C . n D 3 8 PRO 8 8 8 PRO PRO C . n D 3 9 ILE 9 9 9 ILE ILE C . n D 3 10 ALA 10 10 10 ALA ALA C . n D 3 11 GLU 11 11 11 GLU GLU C . n D 3 12 ASN 12 12 12 ASN ASN C . n D 3 13 LYS 13 13 13 LYS LYS C . n D 3 14 GLU 14 14 14 GLU GLU C . n D 3 15 ALA 15 15 15 ALA ALA C . n D 3 16 LYS 16 16 16 LYS LYS C . n D 3 17 ALA 17 17 17 ALA ALA C . n D 3 18 LYS 18 18 18 LYS LYS C . n D 3 19 TYR 19 19 19 TYR TYR C . n D 3 20 ASP 20 20 20 ASP ASP C . n D 3 21 ILE 21 21 21 ILE ILE C . n D 3 22 LEU 22 22 22 LEU LEU C . n D 3 23 GLU 23 23 23 GLU GLU C . n D 3 24 THR 24 24 24 THR THR C . n D 3 25 TYR 25 25 25 TYR TYR C . n D 3 26 GLU 26 26 26 GLU GLU C . n D 3 27 ALA 27 27 27 ALA ALA C . n D 3 28 GLY 28 28 28 GLY GLY C . n D 3 29 ILE 29 29 29 ILE ILE C . n D 3 30 VAL 30 30 30 VAL VAL C . n D 3 31 LEU 31 31 31 LEU LEU C . n D 3 32 LYS 32 32 32 LYS LYS C . n D 3 33 GLY 33 33 33 GLY GLY C . n D 3 34 SER 34 34 34 SER SER C . n D 3 35 GLU 35 35 35 GLU GLU C . n D 3 36 VAL 36 36 36 VAL VAL C . n D 3 37 LYS 37 37 37 LYS LYS C . n D 3 38 SER 38 38 38 SER SER C . n D 3 39 LEU 39 39 39 LEU LEU C . n D 3 40 ARG 40 40 40 ARG ARG C . n D 3 41 GLU 41 41 41 GLU GLU C . n D 3 42 LYS 42 42 42 LYS LYS C . n D 3 43 GLY 43 43 43 GLY GLY C . n D 3 44 THR 44 44 44 THR THR C . n D 3 45 VAL 45 45 45 VAL VAL C . n D 3 46 SER 46 46 46 SER SER C . n D 3 47 PHE 47 47 47 PHE PHE C . n D 3 48 LYS 48 48 48 LYS LYS C . n D 3 49 ASP 49 49 49 ASP ASP C . n D 3 50 SER 50 50 50 SER SER C . n D 3 51 PHE 51 51 51 PHE PHE C . n D 3 52 VAL 52 52 52 VAL VAL C . n D 3 53 ARG 53 53 53 ARG ARG C . n D 3 54 ILE 54 54 54 ILE ILE C . n D 3 55 GLU 55 55 55 GLU GLU C . n D 3 56 ASN 56 56 56 ASN ASN C . n D 3 57 GLY 57 57 57 GLY GLY C . n D 3 58 GLU 58 58 58 GLU GLU C . n D 3 59 ALA 59 59 59 ALA ALA C . n D 3 60 TRP 60 60 60 TRP TRP C . n D 3 61 LEU 61 61 61 LEU LEU C . n D 3 62 TYR 62 62 62 TYR TYR C . n D 3 63 ASN 63 63 63 ASN ASN C . n D 3 64 LEU 64 64 64 LEU LEU C . n D 3 65 TYR 65 65 65 TYR TYR C . n D 3 66 ILE 66 66 66 ILE ILE C . n D 3 67 ALA 67 67 67 ALA ALA C . n D 3 68 PRO 68 68 68 PRO PRO C . n D 3 69 TYR 69 69 69 TYR TYR C . n D 3 70 LYS 70 70 70 LYS LYS C . n D 3 71 HIS 71 71 71 HIS HIS C . n D 3 72 ALA 72 72 72 ALA ALA C . n D 3 73 THR 73 73 ? ? ? C . n D 3 74 ILE 74 74 ? ? ? C . n D 3 75 GLU 75 75 ? ? ? C . n D 3 76 ASN 76 76 76 ASN ASN C . n D 3 77 HIS 77 77 77 HIS HIS C . n D 3 78 ASP 78 78 78 ASP ASP C . n D 3 79 PRO 79 79 79 PRO PRO C . n D 3 80 LEU 80 80 80 LEU LEU C . n D 3 81 ARG 81 81 81 ARG ARG C . n D 3 82 LYS 82 82 82 LYS LYS C . n D 3 83 ARG 83 83 83 ARG ARG C . n D 3 84 LYS 84 84 84 LYS LYS C . n D 3 85 LEU 85 85 85 LEU LEU C . n D 3 86 LEU 86 86 86 LEU LEU C . n D 3 87 LEU 87 87 87 LEU LEU C . n D 3 88 HIS 88 88 88 HIS HIS C . n D 3 89 LYS 89 89 89 LYS LYS C . n D 3 90 ARG 90 90 90 ARG ARG C . n D 3 91 GLU 91 91 91 GLU GLU C . n D 3 92 ILE 92 92 92 ILE ILE C . n D 3 93 MET 93 93 93 MET MET C . n D 3 94 ARG 94 94 94 ARG ARG C . n D 3 95 LEU 95 95 95 LEU LEU C . n D 3 96 TYR 96 96 96 TYR TYR C . n D 3 97 GLY 97 97 97 GLY GLY C . n D 3 98 LYS 98 98 98 LYS LYS C . n D 3 99 VAL 99 99 99 VAL VAL C . n D 3 100 GLN 100 100 100 GLN GLN C . n D 3 101 GLU 101 101 101 GLU GLU C . n D 3 102 LYS 102 102 ? ? ? C . n D 3 103 GLY 103 103 ? ? ? C . n D 3 104 TYR 104 104 ? ? ? C . n D 3 105 THR 105 105 ? ? ? C . n D 3 106 ILE 106 106 106 ILE ILE C . n D 3 107 ILE 107 107 107 ILE ILE C . n D 3 108 PRO 108 108 108 PRO PRO C . n D 3 109 LEU 109 109 109 LEU LEU C . n D 3 110 LYS 110 110 110 LYS LYS C . n D 3 111 LEU 111 111 111 LEU LEU C . n D 3 112 TYR 112 112 112 TYR TYR C . n D 3 113 TRP 113 113 113 TRP TRP C . n D 3 114 LYS 114 114 114 LYS LYS C . n D 3 115 ASN 115 115 115 ASN ASN C . n D 3 116 ASN 116 116 116 ASN ASN C . n D 3 117 LYS 117 117 117 LYS LYS C . n D 3 118 VAL 118 118 118 VAL VAL C . n D 3 119 LYS 119 119 119 LYS LYS C . n D 3 120 VAL 120 120 120 VAL VAL C . n D 3 121 LEU 121 121 121 LEU LEU C . n D 3 122 ILE 122 122 122 ILE ILE C . n D 3 123 ALA 123 123 123 ALA ALA C . n D 3 124 LEU 124 124 124 LEU LEU C . n D 3 125 ALA 125 125 ? ? ? C . n D 3 126 LYS 126 126 ? ? ? C . n D 3 127 GLY 127 127 ? ? ? C . n D 3 128 LYS 128 128 ? ? ? C . n D 3 129 LYS 129 129 ? ? ? C . n D 3 130 LEU 130 130 ? ? ? C . n D 3 131 TYR 131 131 ? ? ? C . n D 3 132 ASP 132 132 ? ? ? C . n D 3 133 ARG 133 133 ? ? ? C . n D 3 134 ARG 134 134 ? ? ? C . n D 3 135 ARG 135 135 ? ? ? C . n D 3 136 GLU 136 136 ? ? ? C . n D 3 137 LEU 137 137 ? ? ? C . n D 3 138 LYS 138 138 ? ? ? C . n D 3 139 GLU 139 139 ? ? ? C . n D 3 140 LYS 140 140 ? ? ? C . n D 3 141 ALA 141 141 ? ? ? C . n D 3 142 MET 142 142 ? ? ? C . n D 3 143 LYS 143 143 ? ? ? C . n D 3 144 ARG 144 144 ? ? ? C . n D 3 145 GLU 145 145 ? ? ? C . n D 3 146 LEU 146 146 ? ? ? C . n D 3 147 GLU 147 147 ? ? ? C . n D 3 148 ARG 148 148 ? ? ? C . n D 3 149 GLU 149 149 ? ? ? C . n D 3 150 PHE 150 150 ? ? ? C . n D 3 151 LYS 151 151 ? ? ? C . n D 3 152 GLY 152 152 ? ? ? C . n D 3 153 LYS 153 153 ? ? ? C . n D 3 154 ILE 154 154 ? ? ? C . n D 3 155 HIS 155 155 ? ? ? C . n D 3 156 LEU 156 156 ? ? ? C . n # _cell.entry_id 2OB7 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OB7 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2OB7 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 237 _refine_hist.pdbx_number_atoms_nucleic_acid 414 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 651 _refine_hist.d_res_high . _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 2OB7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2OB7 _struct.title 'Structure of tmRNA-(SmpB)2 complex as inferred from cryo-EM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OB7 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text 'tmRNA, SmpB, RNA BINDING PROTEIN-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 2OB7 2OB7 ? ? ? 2 2 PDB 2OB7 2OB7 ? ? ? 3 3 PDB 2OB7 2OB7 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OB7 A 1 ? 328 ? 2OB7 1 ? 362 ? 1 362 2 2 2OB7 D 1 ? 86 ? 2OB7 1406 ? 1496 ? 1406 1496 3 3 2OB7 B 1 ? 156 ? 2OB7 1 ? 156 ? 1 156 4 3 2OB7 C 1 ? 156 ? 2OB7 1 ? 156 ? 1 156 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 P _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 A _pdbx_validate_close_contact.auth_seq_id_1 101 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 P _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 C _pdbx_validate_close_contact.auth_seq_id_2 138 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.92 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE The deposited entry is a model to fit the cryo-EM map of tmRNA+SmpB(2) from Thermus thermophilus. The deposition includes 4 chains: chain A: tmRNA model chains B,C: SmpB (from 1P6V.pdb chain A, for SmpB from AQUIFEX AEOLICUS); chain D: helix 44 of 30S ribosomal subunit (from 1N34.pdb chain A:1406-1496. X-ray structure of 1N34 is from Thermus thermophilus). The E.coli model eschcolitm3D-model-72.pdb (http://www.ag.auburn.edu/mirror/tmRDB/rna/tmrna.html/) was used as a template to build the model by replacing several fragments which have x-ray crystal as alternatives, and by fitting all the structures into the cryo-EM maps. Nucleotide numbering in this model follows E.coli sequence. Considering the differences between tmRNA sequences from E.coli and T.thermophilus, a small number of nucleotides in the template model are not included in this model. ; # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 2OB7 _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details 'METHOD--manual fitting using stereo visualization REFINEMENT PROTOCOL--Manual' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 1P6V _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.details '1P6V FOR SMPB AND TLD OF TMRNA' _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 1P6V # _em_3d_reconstruction.entry_id 2OB7 _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 52829 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'single particle reconstruction' _em_3d_reconstruction.nominal_pixel_size 2.82 _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.resolution 13.6 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name polimix _em_buffer.pH 7.5 _em_buffer.details polimix # _em_entity_assembly.id 1 _em_entity_assembly.name 'Pre-accommodated ribosomal trans-translation complex: T. thermophilus 70S-mRNA-(P-site tRNA)-tmRNA-(SmpB)2-(EF-Tu)-GDP-kirromycin' _em_entity_assembly.type RIBOSOME _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ;see Experimental Procedures in Kaur et al. (PNAS). [Deposition refers to structure of tmRNA-(SmpB)2 complex derived by fitting of EM map from Kaur et al. Fitting was modified in Gillet et al.] ; _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 2OB7 _em_imaging.id 1 _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.specimen_id 1 _em_imaging.date 2004-06-01 _em_imaging.temperature 296 _em_imaging.nominal_defocus_min 1475 _em_imaging.nominal_defocus_max 3635 _em_imaging.tilt_angle_min 0 _em_imaging.tilt_angle_max 0 _em_imaging.nominal_cs 2 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_magnification 55000 _em_imaging.calibrated_magnification 49000 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'This grid plus sample was kept at -80 degree C for several days before use.' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 2OB7 _em_vitrification.id 1 _em_vitrification.instrument 'FEI VITROBOT MARK I' _em_vitrification.cryogen_name ETHANE _em_vitrification.details ;Blot for 5 seconds before plunging. Rapid plunge freezing in liquid ethane. ; _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.specimen_id 1 _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 2OB7 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 2OB7 _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLY 1 ? C GLY 1 2 1 Y 1 B LYS 2 ? C LYS 2 3 1 Y 1 B LYS 70 ? C LYS 70 4 1 Y 1 B HIS 71 ? C HIS 71 5 1 Y 1 B ALA 72 ? C ALA 72 6 1 Y 1 B THR 73 ? C THR 73 7 1 Y 1 B ILE 74 ? C ILE 74 8 1 Y 1 B GLU 75 ? C GLU 75 9 1 Y 1 B TYR 131 ? C TYR 131 10 1 Y 1 B ASP 132 ? C ASP 132 11 1 Y 1 B ARG 133 ? C ARG 133 12 1 Y 1 B ARG 134 ? C ARG 134 13 1 Y 1 B ARG 135 ? C ARG 135 14 1 Y 1 B GLU 136 ? C GLU 136 15 1 Y 1 B LEU 137 ? C LEU 137 16 1 Y 1 B LYS 138 ? C LYS 138 17 1 Y 1 B GLU 139 ? C GLU 139 18 1 Y 1 B LYS 140 ? C LYS 140 19 1 Y 1 B ALA 141 ? C ALA 141 20 1 Y 1 B MET 142 ? C MET 142 21 1 Y 1 B LYS 143 ? C LYS 143 22 1 Y 1 B ARG 144 ? C ARG 144 23 1 Y 1 B GLU 145 ? C GLU 145 24 1 Y 1 B LEU 146 ? C LEU 146 25 1 Y 1 B GLU 147 ? C GLU 147 26 1 Y 1 B ARG 148 ? C ARG 148 27 1 Y 1 B GLU 149 ? C GLU 149 28 1 Y 1 B PHE 150 ? C PHE 150 29 1 Y 1 B LYS 151 ? C LYS 151 30 1 Y 1 B GLY 152 ? C GLY 152 31 1 Y 1 B LYS 153 ? C LYS 153 32 1 Y 1 B ILE 154 ? C ILE 154 33 1 Y 1 B HIS 155 ? C HIS 155 34 1 Y 1 B LEU 156 ? C LEU 156 35 1 Y 1 C GLY 1 ? D GLY 1 36 1 Y 1 C LYS 2 ? D LYS 2 37 1 Y 1 C THR 73 ? D THR 73 38 1 Y 1 C ILE 74 ? D ILE 74 39 1 Y 1 C GLU 75 ? D GLU 75 40 1 Y 1 C LYS 102 ? D LYS 102 41 1 Y 1 C GLY 103 ? D GLY 103 42 1 Y 1 C TYR 104 ? D TYR 104 43 1 Y 1 C THR 105 ? D THR 105 44 1 Y 1 C ALA 125 ? D ALA 125 45 1 Y 1 C LYS 126 ? D LYS 126 46 1 Y 1 C GLY 127 ? D GLY 127 47 1 Y 1 C LYS 128 ? D LYS 128 48 1 Y 1 C LYS 129 ? D LYS 129 49 1 Y 1 C LEU 130 ? D LEU 130 50 1 Y 1 C TYR 131 ? D TYR 131 51 1 Y 1 C ASP 132 ? D ASP 132 52 1 Y 1 C ARG 133 ? D ARG 133 53 1 Y 1 C ARG 134 ? D ARG 134 54 1 Y 1 C ARG 135 ? D ARG 135 55 1 Y 1 C GLU 136 ? D GLU 136 56 1 Y 1 C LEU 137 ? D LEU 137 57 1 Y 1 C LYS 138 ? D LYS 138 58 1 Y 1 C GLU 139 ? D GLU 139 59 1 Y 1 C LYS 140 ? D LYS 140 60 1 Y 1 C ALA 141 ? D ALA 141 61 1 Y 1 C MET 142 ? D MET 142 62 1 Y 1 C LYS 143 ? D LYS 143 63 1 Y 1 C ARG 144 ? D ARG 144 64 1 Y 1 C GLU 145 ? D GLU 145 65 1 Y 1 C LEU 146 ? D LEU 146 66 1 Y 1 C GLU 147 ? D GLU 147 67 1 Y 1 C ARG 148 ? D ARG 148 68 1 Y 1 C GLU 149 ? D GLU 149 69 1 Y 1 C PHE 150 ? D PHE 150 70 1 Y 1 C LYS 151 ? D LYS 151 71 1 Y 1 C GLY 152 ? D GLY 152 72 1 Y 1 C LYS 153 ? D LYS 153 73 1 Y 1 C ILE 154 ? D ILE 154 74 1 Y 1 C HIS 155 ? D HIS 155 75 1 Y 1 C LEU 156 ? D LEU 156 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 ILE N N N N 254 ILE CA C N S 255 ILE C C N N 256 ILE O O N N 257 ILE CB C N S 258 ILE CG1 C N N 259 ILE CG2 C N N 260 ILE CD1 C N N 261 ILE OXT O N N 262 ILE H H N N 263 ILE H2 H N N 264 ILE HA H N N 265 ILE HB H N N 266 ILE HG12 H N N 267 ILE HG13 H N N 268 ILE HG21 H N N 269 ILE HG22 H N N 270 ILE HG23 H N N 271 ILE HD11 H N N 272 ILE HD12 H N N 273 ILE HD13 H N N 274 ILE HXT H N N 275 LEU N N N N 276 LEU CA C N S 277 LEU C C N N 278 LEU O O N N 279 LEU CB C N N 280 LEU CG C N N 281 LEU CD1 C N N 282 LEU CD2 C N N 283 LEU OXT O N N 284 LEU H H N N 285 LEU H2 H N N 286 LEU HA H N N 287 LEU HB2 H N N 288 LEU HB3 H N N 289 LEU HG H N N 290 LEU HD11 H N N 291 LEU HD12 H N N 292 LEU HD13 H N N 293 LEU HD21 H N N 294 LEU HD22 H N N 295 LEU HD23 H N N 296 LEU HXT H N N 297 LYS N N N N 298 LYS CA C N S 299 LYS C C N N 300 LYS O O N N 301 LYS CB C N N 302 LYS CG C N N 303 LYS CD C N N 304 LYS CE C N N 305 LYS NZ N N N 306 LYS OXT O N N 307 LYS H H N N 308 LYS H2 H N N 309 LYS HA H N N 310 LYS HB2 H N N 311 LYS HB3 H N N 312 LYS HG2 H N N 313 LYS HG3 H N N 314 LYS HD2 H N N 315 LYS HD3 H N N 316 LYS HE2 H N N 317 LYS HE3 H N N 318 LYS HZ1 H N N 319 LYS HZ2 H N N 320 LYS HZ3 H N N 321 LYS HXT H N N 322 MET N N N N 323 MET CA C N S 324 MET C C N N 325 MET O O N N 326 MET CB C N N 327 MET CG C N N 328 MET SD S N N 329 MET CE C N N 330 MET OXT O N N 331 MET H H N N 332 MET H2 H N N 333 MET HA H N N 334 MET HB2 H N N 335 MET HB3 H N N 336 MET HG2 H N N 337 MET HG3 H N N 338 MET HE1 H N N 339 MET HE2 H N N 340 MET HE3 H N N 341 MET HXT H N N 342 PHE N N N N 343 PHE CA C N S 344 PHE C C N N 345 PHE O O N N 346 PHE CB C N N 347 PHE CG C Y N 348 PHE CD1 C Y N 349 PHE CD2 C Y N 350 PHE CE1 C Y N 351 PHE CE2 C Y N 352 PHE CZ C Y N 353 PHE OXT O N N 354 PHE H H N N 355 PHE H2 H N N 356 PHE HA H N N 357 PHE HB2 H N N 358 PHE HB3 H N N 359 PHE HD1 H N N 360 PHE HD2 H N N 361 PHE HE1 H N N 362 PHE HE2 H N N 363 PHE HZ H N N 364 PHE HXT H N N 365 PRO N N N N 366 PRO CA C N S 367 PRO C C N N 368 PRO O O N N 369 PRO CB C N N 370 PRO CG C N N 371 PRO CD C N N 372 PRO OXT O N N 373 PRO H H N N 374 PRO HA H N N 375 PRO HB2 H N N 376 PRO HB3 H N N 377 PRO HG2 H N N 378 PRO HG3 H N N 379 PRO HD2 H N N 380 PRO HD3 H N N 381 PRO HXT H N N 382 SER N N N N 383 SER CA C N S 384 SER C C N N 385 SER O O N N 386 SER CB C N N 387 SER OG O N N 388 SER OXT O N N 389 SER H H N N 390 SER H2 H N N 391 SER HA H N N 392 SER HB2 H N N 393 SER HB3 H N N 394 SER HG H N N 395 SER HXT H N N 396 THR N N N N 397 THR CA C N S 398 THR C C N N 399 THR O O N N 400 THR CB C N R 401 THR OG1 O N N 402 THR CG2 C N N 403 THR OXT O N N 404 THR H H N N 405 THR H2 H N N 406 THR HA H N N 407 THR HB H N N 408 THR HG1 H N N 409 THR HG21 H N N 410 THR HG22 H N N 411 THR HG23 H N N 412 THR HXT H N N 413 TRP N N N N 414 TRP CA C N S 415 TRP C C N N 416 TRP O O N N 417 TRP CB C N N 418 TRP CG C Y N 419 TRP CD1 C Y N 420 TRP CD2 C Y N 421 TRP NE1 N Y N 422 TRP CE2 C Y N 423 TRP CE3 C Y N 424 TRP CZ2 C Y N 425 TRP CZ3 C Y N 426 TRP CH2 C Y N 427 TRP OXT O N N 428 TRP H H N N 429 TRP H2 H N N 430 TRP HA H N N 431 TRP HB2 H N N 432 TRP HB3 H N N 433 TRP HD1 H N N 434 TRP HE1 H N N 435 TRP HE3 H N N 436 TRP HZ2 H N N 437 TRP HZ3 H N N 438 TRP HH2 H N N 439 TRP HXT H N N 440 TYR N N N N 441 TYR CA C N S 442 TYR C C N N 443 TYR O O N N 444 TYR CB C N N 445 TYR CG C Y N 446 TYR CD1 C Y N 447 TYR CD2 C Y N 448 TYR CE1 C Y N 449 TYR CE2 C Y N 450 TYR CZ C Y N 451 TYR OH O N N 452 TYR OXT O N N 453 TYR H H N N 454 TYR H2 H N N 455 TYR HA H N N 456 TYR HB2 H N N 457 TYR HB3 H N N 458 TYR HD1 H N N 459 TYR HD2 H N N 460 TYR HE1 H N N 461 TYR HE2 H N N 462 TYR HH H N N 463 TYR HXT H N N 464 U OP3 O N N 465 U P P N N 466 U OP1 O N N 467 U OP2 O N N 468 U "O5'" O N N 469 U "C5'" C N N 470 U "C4'" C N R 471 U "O4'" O N N 472 U "C3'" C N S 473 U "O3'" O N N 474 U "C2'" C N R 475 U "O2'" O N N 476 U "C1'" C N R 477 U N1 N N N 478 U C2 C N N 479 U O2 O N N 480 U N3 N N N 481 U C4 C N N 482 U O4 O N N 483 U C5 C N N 484 U C6 C N N 485 U HOP3 H N N 486 U HOP2 H N N 487 U "H5'" H N N 488 U "H5''" H N N 489 U "H4'" H N N 490 U "H3'" H N N 491 U "HO3'" H N N 492 U "H2'" H N N 493 U "HO2'" H N N 494 U "H1'" H N N 495 U H3 H N N 496 U H5 H N N 497 U H6 H N N 498 VAL N N N N 499 VAL CA C N S 500 VAL C C N N 501 VAL O O N N 502 VAL CB C N N 503 VAL CG1 C N N 504 VAL CG2 C N N 505 VAL OXT O N N 506 VAL H H N N 507 VAL H2 H N N 508 VAL HA H N N 509 VAL HB H N N 510 VAL HG11 H N N 511 VAL HG12 H N N 512 VAL HG13 H N N 513 VAL HG21 H N N 514 VAL HG22 H N N 515 VAL HG23 H N N 516 VAL HXT H N N 517 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 ILE N CA sing N N 252 ILE N H sing N N 253 ILE N H2 sing N N 254 ILE CA C sing N N 255 ILE CA CB sing N N 256 ILE CA HA sing N N 257 ILE C O doub N N 258 ILE C OXT sing N N 259 ILE CB CG1 sing N N 260 ILE CB CG2 sing N N 261 ILE CB HB sing N N 262 ILE CG1 CD1 sing N N 263 ILE CG1 HG12 sing N N 264 ILE CG1 HG13 sing N N 265 ILE CG2 HG21 sing N N 266 ILE CG2 HG22 sing N N 267 ILE CG2 HG23 sing N N 268 ILE CD1 HD11 sing N N 269 ILE CD1 HD12 sing N N 270 ILE CD1 HD13 sing N N 271 ILE OXT HXT sing N N 272 LEU N CA sing N N 273 LEU N H sing N N 274 LEU N H2 sing N N 275 LEU CA C sing N N 276 LEU CA CB sing N N 277 LEU CA HA sing N N 278 LEU C O doub N N 279 LEU C OXT sing N N 280 LEU CB CG sing N N 281 LEU CB HB2 sing N N 282 LEU CB HB3 sing N N 283 LEU CG CD1 sing N N 284 LEU CG CD2 sing N N 285 LEU CG HG sing N N 286 LEU CD1 HD11 sing N N 287 LEU CD1 HD12 sing N N 288 LEU CD1 HD13 sing N N 289 LEU CD2 HD21 sing N N 290 LEU CD2 HD22 sing N N 291 LEU CD2 HD23 sing N N 292 LEU OXT HXT sing N N 293 LYS N CA sing N N 294 LYS N H sing N N 295 LYS N H2 sing N N 296 LYS CA C sing N N 297 LYS CA CB sing N N 298 LYS CA HA sing N N 299 LYS C O doub N N 300 LYS C OXT sing N N 301 LYS CB CG sing N N 302 LYS CB HB2 sing N N 303 LYS CB HB3 sing N N 304 LYS CG CD sing N N 305 LYS CG HG2 sing N N 306 LYS CG HG3 sing N N 307 LYS CD CE sing N N 308 LYS CD HD2 sing N N 309 LYS CD HD3 sing N N 310 LYS CE NZ sing N N 311 LYS CE HE2 sing N N 312 LYS CE HE3 sing N N 313 LYS NZ HZ1 sing N N 314 LYS NZ HZ2 sing N N 315 LYS NZ HZ3 sing N N 316 LYS OXT HXT sing N N 317 MET N CA sing N N 318 MET N H sing N N 319 MET N H2 sing N N 320 MET CA C sing N N 321 MET CA CB sing N N 322 MET CA HA sing N N 323 MET C O doub N N 324 MET C OXT sing N N 325 MET CB CG sing N N 326 MET CB HB2 sing N N 327 MET CB HB3 sing N N 328 MET CG SD sing N N 329 MET CG HG2 sing N N 330 MET CG HG3 sing N N 331 MET SD CE sing N N 332 MET CE HE1 sing N N 333 MET CE HE2 sing N N 334 MET CE HE3 sing N N 335 MET OXT HXT sing N N 336 PHE N CA sing N N 337 PHE N H sing N N 338 PHE N H2 sing N N 339 PHE CA C sing N N 340 PHE CA CB sing N N 341 PHE CA HA sing N N 342 PHE C O doub N N 343 PHE C OXT sing N N 344 PHE CB CG sing N N 345 PHE CB HB2 sing N N 346 PHE CB HB3 sing N N 347 PHE CG CD1 doub Y N 348 PHE CG CD2 sing Y N 349 PHE CD1 CE1 sing Y N 350 PHE CD1 HD1 sing N N 351 PHE CD2 CE2 doub Y N 352 PHE CD2 HD2 sing N N 353 PHE CE1 CZ doub Y N 354 PHE CE1 HE1 sing N N 355 PHE CE2 CZ sing Y N 356 PHE CE2 HE2 sing N N 357 PHE CZ HZ sing N N 358 PHE OXT HXT sing N N 359 PRO N CA sing N N 360 PRO N CD sing N N 361 PRO N H sing N N 362 PRO CA C sing N N 363 PRO CA CB sing N N 364 PRO CA HA sing N N 365 PRO C O doub N N 366 PRO C OXT sing N N 367 PRO CB CG sing N N 368 PRO CB HB2 sing N N 369 PRO CB HB3 sing N N 370 PRO CG CD sing N N 371 PRO CG HG2 sing N N 372 PRO CG HG3 sing N N 373 PRO CD HD2 sing N N 374 PRO CD HD3 sing N N 375 PRO OXT HXT sing N N 376 SER N CA sing N N 377 SER N H sing N N 378 SER N H2 sing N N 379 SER CA C sing N N 380 SER CA CB sing N N 381 SER CA HA sing N N 382 SER C O doub N N 383 SER C OXT sing N N 384 SER CB OG sing N N 385 SER CB HB2 sing N N 386 SER CB HB3 sing N N 387 SER OG HG sing N N 388 SER OXT HXT sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TRP N CA sing N N 406 TRP N H sing N N 407 TRP N H2 sing N N 408 TRP CA C sing N N 409 TRP CA CB sing N N 410 TRP CA HA sing N N 411 TRP C O doub N N 412 TRP C OXT sing N N 413 TRP CB CG sing N N 414 TRP CB HB2 sing N N 415 TRP CB HB3 sing N N 416 TRP CG CD1 doub Y N 417 TRP CG CD2 sing Y N 418 TRP CD1 NE1 sing Y N 419 TRP CD1 HD1 sing N N 420 TRP CD2 CE2 doub Y N 421 TRP CD2 CE3 sing Y N 422 TRP NE1 CE2 sing Y N 423 TRP NE1 HE1 sing N N 424 TRP CE2 CZ2 sing Y N 425 TRP CE3 CZ3 doub Y N 426 TRP CE3 HE3 sing N N 427 TRP CZ2 CH2 doub Y N 428 TRP CZ2 HZ2 sing N N 429 TRP CZ3 CH2 sing Y N 430 TRP CZ3 HZ3 sing N N 431 TRP CH2 HH2 sing N N 432 TRP OXT HXT sing N N 433 TYR N CA sing N N 434 TYR N H sing N N 435 TYR N H2 sing N N 436 TYR CA C sing N N 437 TYR CA CB sing N N 438 TYR CA HA sing N N 439 TYR C O doub N N 440 TYR C OXT sing N N 441 TYR CB CG sing N N 442 TYR CB HB2 sing N N 443 TYR CB HB3 sing N N 444 TYR CG CD1 doub Y N 445 TYR CG CD2 sing Y N 446 TYR CD1 CE1 sing Y N 447 TYR CD1 HD1 sing N N 448 TYR CD2 CE2 doub Y N 449 TYR CD2 HD2 sing N N 450 TYR CE1 CZ doub Y N 451 TYR CE1 HE1 sing N N 452 TYR CE2 CZ sing Y N 453 TYR CE2 HE2 sing N N 454 TYR CZ OH sing N N 455 TYR OH HH sing N N 456 TYR OXT HXT sing N N 457 U OP3 P sing N N 458 U OP3 HOP3 sing N N 459 U P OP1 doub N N 460 U P OP2 sing N N 461 U P "O5'" sing N N 462 U OP2 HOP2 sing N N 463 U "O5'" "C5'" sing N N 464 U "C5'" "C4'" sing N N 465 U "C5'" "H5'" sing N N 466 U "C5'" "H5''" sing N N 467 U "C4'" "O4'" sing N N 468 U "C4'" "C3'" sing N N 469 U "C4'" "H4'" sing N N 470 U "O4'" "C1'" sing N N 471 U "C3'" "O3'" sing N N 472 U "C3'" "C2'" sing N N 473 U "C3'" "H3'" sing N N 474 U "O3'" "HO3'" sing N N 475 U "C2'" "O2'" sing N N 476 U "C2'" "C1'" sing N N 477 U "C2'" "H2'" sing N N 478 U "O2'" "HO2'" sing N N 479 U "C1'" N1 sing N N 480 U "C1'" "H1'" sing N N 481 U N1 C2 sing N N 482 U N1 C6 sing N N 483 U C2 O2 doub N N 484 U C2 N3 sing N N 485 U N3 C4 sing N N 486 U N3 H3 sing N N 487 U C4 O4 doub N N 488 U C4 C5 sing N N 489 U C5 C6 doub N N 490 U C5 H5 sing N N 491 U C6 H6 sing N N 492 VAL N CA sing N N 493 VAL N H sing N N 494 VAL N H2 sing N N 495 VAL CA C sing N N 496 VAL CA CB sing N N 497 VAL CA HA sing N N 498 VAL C O doub N N 499 VAL C OXT sing N N 500 VAL CB CG1 sing N N 501 VAL CB CG2 sing N N 502 VAL CB HB sing N N 503 VAL CG1 HG11 sing N N 504 VAL CG1 HG12 sing N N 505 VAL CG1 HG13 sing N N 506 VAL CG2 HG21 sing N N 507 VAL CG2 HG22 sing N N 508 VAL CG2 HG23 sing N N 509 VAL OXT HXT sing N N 510 # _em_ctf_correction.id 1 _em_ctf_correction.details 'CTF correction of each defocus group reconstruction, by Wiener filtering' _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.avg_electron_dose_per_image 15 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 O ? 'MODEL FITTING' ? ? 2 SPIDER ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 32 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_coordinate_model.asym_id _pdbx_coordinate_model.type A 'P ATOMS ONLY' B 'P ATOMS ONLY' C 'CA ATOMS ONLY' D 'CA ATOMS ONLY' # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1P6V # _atom_sites.entry_id 2OB7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C P # loop_