HEADER CELL CYCLE 19-DEC-06 2OBH TITLE CENTRIN-XPC PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CENTRIN-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HSCEN2 ( RESIDUES: 26-168); COMPND 5 SYNONYM: CALTRACTIN ISOFORM 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA-REPAIR PROTEIN COMPLEMENTING XP-C CELLS; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: XPC FRAGMENT (RESIDUES: 847-863); COMPND 11 SYNONYM: XERODERMA PIGMENTOSUM GROUP C-COMPLEMENTING PROTEIN, P125; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CETN2, CALT, CEN2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A(+); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE OCCURS IN HOMO SAPIENS KEYWDS DNA REPAIR COMPLEX EF HAND SUPERFAMILY PROTEIN-PEPTIDE COMPLEX, CELL KEYWDS 2 CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.CHARBONNIER REVDAT 6 06-NOV-24 2OBH 1 REMARK REVDAT 5 30-AUG-23 2OBH 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2OBH 1 VERSN REVDAT 3 24-FEB-09 2OBH 1 VERSN REVDAT 2 30-OCT-07 2OBH 1 JRNL REVDAT 1 09-OCT-07 2OBH 0 JRNL AUTH J.B.CHARBONNIER,E.RENAUD,S.MIRON,M.H.LE DU,Y.BLOUQUIT, JRNL AUTH 2 P.DUCHAMBON,P.CHRISTOVA,A.SHOSHEVA,T.ROSE,J.F.ANGULO, JRNL AUTH 3 C.T.CRAESCU JRNL TITL STRUCTURAL, THERMODYNAMIC, AND CELLULAR CHARACTERIZATION OF JRNL TITL 2 HUMAN CENTRIN 2 INTERACTION WITH XERODERMA PIGMENTOSUM GROUP JRNL TITL 3 C PROTEIN. JRNL REF J.MOL.BIOL. V. 373 1032 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17897675 JRNL DOI 10.1016/J.JMB.2007.08.046 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.B.CHARBONNIER,P.CHRISTOVA,A.SHOSHEVA,E.LE DU,M.H.STURA, REMARK 1 AUTH 2 Y.BLOUQUIT,P.DUCHAMBON,S.MIRON,C.T.CRAESCU REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION DATA OF REMARK 1 TITL 2 THE COMPLEX BETWEEN HUMAN CENTRIN 2 AND A PEPTIDE FROM THE REMARK 1 TITL 3 PROTEIN XPC REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 62 649 2006 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 16820684 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.YANG,S.MIRON,L.MOUAWAD,P.DUCHAMBON,Y.BLOUQUIT,C.T.CRAESCU REMARK 1 TITL FLEXIBILITY AND PLASTICITY OF HUMAN CENTRIN 2 BINDING TO THE REMARK 1 TITL 2 XERODERMA PIGMENTOSUM GROUP C PROTEIN (XPC) FROM NUCLEAR REMARK 1 TITL 3 EXCISION REPAIR REMARK 1 REF BIOCHEMISTRY V. 45 3653 2006 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI0524868 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.R.THOMPSON,Z.C.RYAN,J.L.SALISBURY,R.KUMAR REMARK 1 TITL THE STRUCTURE OF THE HUMAN CENTRIN 2-XERODERMA PIGMENTOSUM REMARK 1 TITL 2 GROUP C PROTEIN COMPLEX REMARK 1 REF J.BIOL.CHEM. V. 281 18746 2006 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 16627479 REMARK 1 DOI 10.1074/JBC.M513667200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 32499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1722 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2243 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2591 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 384 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.353 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2615 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3470 ; 1.405 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 4.466 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;29.766 ;26.183 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 585 ;16.513 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.220 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 377 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1889 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1381 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1810 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 308 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 12 ; 0.083 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 56 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1651 ; 1.118 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2528 ; 1.696 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1071 ; 2.643 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 942 ; 4.092 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 4 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 27 A 85 4 REMARK 3 1 B 27 B 85 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 468 ; 0.330 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 468 ; 0.660 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 86 A 113 4 REMARK 3 1 B 86 B 113 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 232 ; 0.440 ; 0.500 REMARK 3 MEDIUM THERMAL 2 A (A**2): 232 ; 1.220 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 114 A 165 4 REMARK 3 1 B 114 B 165 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 A (A): 417 ; 0.430 ; 0.500 REMARK 3 MEDIUM THERMAL 3 A (A**2): 417 ; 0.690 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 847 C 862 4 REMARK 3 1 D 847 D 862 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 C (A): 137 ; 0.550 ; 0.500 REMARK 3 MEDIUM THERMAL 4 C (A**2): 137 ; 1.130 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 85 REMARK 3 RESIDUE RANGE : B 27 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0100 15.6620 25.9190 REMARK 3 T TENSOR REMARK 3 T11: -0.0016 T22: -0.0277 REMARK 3 T33: 0.0336 T12: 0.0080 REMARK 3 T13: -0.0002 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 0.1009 L22: 1.4429 REMARK 3 L33: 0.7322 L12: -0.1116 REMARK 3 L13: -0.0730 L23: 1.0153 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: -0.0053 S13: 0.0022 REMARK 3 S21: 0.0347 S22: 0.0510 S23: -0.0166 REMARK 3 S31: 0.0280 S32: 0.0285 S33: -0.0316 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 113 REMARK 3 RESIDUE RANGE : B 86 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0710 15.9370 26.1740 REMARK 3 T TENSOR REMARK 3 T11: -0.0004 T22: -0.0408 REMARK 3 T33: -0.0040 T12: 0.0151 REMARK 3 T13: -0.0319 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.1135 L22: 1.6547 REMARK 3 L33: 0.8782 L12: -0.0448 REMARK 3 L13: -0.0941 L23: 0.8559 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: -0.0024 S13: 0.0287 REMARK 3 S21: 0.0769 S22: 0.0800 S23: -0.2739 REMARK 3 S31: -0.0069 S32: -0.0314 S33: -0.0885 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 165 REMARK 3 RESIDUE RANGE : B 114 B 165 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8870 15.8870 26.1780 REMARK 3 T TENSOR REMARK 3 T11: 0.0223 T22: 0.0154 REMARK 3 T33: 0.0196 T12: -0.0016 REMARK 3 T13: -0.0072 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.0677 L22: 0.5290 REMARK 3 L33: 5.6496 L12: 0.1750 REMARK 3 L13: -0.6138 L23: -1.5085 REMARK 3 S TENSOR REMARK 3 S11: -0.0589 S12: -0.0422 S13: -0.0218 REMARK 3 S21: 0.0915 S22: -0.1371 S23: -0.1267 REMARK 3 S31: -0.3367 S32: 0.2281 S33: 0.1961 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 847 C 862 REMARK 3 RESIDUE RANGE : D 847 D 862 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5700 15.8310 26.2140 REMARK 3 T TENSOR REMARK 3 T11: 0.0005 T22: -0.0001 REMARK 3 T33: 0.0004 T12: -0.0012 REMARK 3 T13: -0.0054 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.5351 L22: 0.2552 REMARK 3 L33: 12.4933 L12: 0.2150 REMARK 3 L13: -2.5290 L23: -0.7139 REMARK 3 S TENSOR REMARK 3 S11: -0.0536 S12: 0.0558 S13: 0.0135 REMARK 3 S21: -0.0069 S22: -0.2600 S23: -0.1841 REMARK 3 S31: -0.3117 S32: -0.2500 S33: 0.3136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9756 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34221 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 52.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : 0.39500 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1TOP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPEG 550, 0.1M NACL, 0.1M BICINE REMARK 280 PH 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 30.13900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.70950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 30.13900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.70950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG C 863 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1141 O HOH B 1180 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 77 54.43 -116.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 114 OD2 REMARK 620 2 ASP A 116 OD2 75.7 REMARK 620 3 THR A 118 OG1 84.9 109.9 REMARK 620 4 LYS A 120 O 87.4 161.8 74.8 REMARK 620 5 ASN A 125 OD1 106.7 91.9 157.5 86.3 REMARK 620 6 HOH A1004 O 152.9 81.0 90.2 117.0 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 150 OD1 REMARK 620 2 ASP A 152 OD1 82.1 REMARK 620 3 ASP A 154 OD1 83.7 79.9 REMARK 620 4 GLU A 156 O 84.0 153.2 75.9 REMARK 620 5 GLU A 161 OE1 91.1 77.1 156.9 126.1 REMARK 620 6 GLU A 161 OE2 112.0 126.0 150.1 80.5 51.9 REMARK 620 7 HOH A1003 O 158.0 80.8 79.7 105.6 98.5 89.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 114 OD2 REMARK 620 2 ASP B 116 OD1 78.7 REMARK 620 3 THR B 118 OG1 85.0 109.8 REMARK 620 4 LYS B 120 O 86.9 163.5 76.5 REMARK 620 5 ASN B 125 OD1 107.8 90.7 157.9 86.1 REMARK 620 6 HOH B1004 O 155.0 79.5 91.1 116.2 84.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 150 OD2 REMARK 620 2 ASP B 152 OD1 84.6 REMARK 620 3 ASP B 154 OD1 84.6 79.6 REMARK 620 4 GLU B 156 O 85.3 154.3 76.0 REMARK 620 5 GLU B 161 OE1 93.4 74.4 153.9 129.8 REMARK 620 6 GLU B 161 OE2 113.5 123.4 150.5 82.3 52.5 REMARK 620 7 HOH B1003 O 161.0 81.5 80.2 101.8 95.3 85.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GGM RELATED DB: PDB REMARK 900 SAME COMPLEX WITH FULL LENGTH CENTRIN BY XRAY AT 2.3A REMARK 900 RELATED ID: 2A4J RELATED DB: PDB REMARK 900 SAME COMPLEXE WITH CTER (T94-Y172) OF CENTRIN AND BY NMR DBREF 2OBH A 26 168 UNP P41208 CETN2_HUMAN 26 168 DBREF 2OBH B 26 168 UNP P41208 CETN2_HUMAN 26 168 DBREF 2OBH C 847 863 UNP Q01831 XPC_HUMAN 846 862 DBREF 2OBH D 847 863 UNP Q01831 XPC_HUMAN 846 862 SEQADV 2OBH ACE C 846 UNP Q01831 ACETYLATION SEQADV 2OBH ACE D 846 UNP Q01831 ACETYLATION SEQRES 1 A 143 THR GLU GLU GLN LYS GLN GLU ILE ARG GLU ALA PHE ASP SEQRES 2 A 143 LEU PHE ASP ALA ASP GLY THR GLY THR ILE ASP VAL LYS SEQRES 3 A 143 GLU LEU LYS VAL ALA MET ARG ALA LEU GLY PHE GLU PRO SEQRES 4 A 143 LYS LYS GLU GLU ILE LYS LYS MET ILE SER GLU ILE ASP SEQRES 5 A 143 LYS GLU GLY THR GLY LYS MET ASN PHE GLY ASP PHE LEU SEQRES 6 A 143 THR VAL MET THR GLN LYS MET SER GLU LYS ASP THR LYS SEQRES 7 A 143 GLU GLU ILE LEU LYS ALA PHE LYS LEU PHE ASP ASP ASP SEQRES 8 A 143 GLU THR GLY LYS ILE SER PHE LYS ASN LEU LYS ARG VAL SEQRES 9 A 143 ALA LYS GLU LEU GLY GLU ASN LEU THR ASP GLU GLU LEU SEQRES 10 A 143 GLN GLU MET ILE ASP GLU ALA ASP ARG ASP GLY ASP GLY SEQRES 11 A 143 GLU VAL SER GLU GLN GLU PHE LEU ARG ILE MET LYS LYS SEQRES 1 B 143 THR GLU GLU GLN LYS GLN GLU ILE ARG GLU ALA PHE ASP SEQRES 2 B 143 LEU PHE ASP ALA ASP GLY THR GLY THR ILE ASP VAL LYS SEQRES 3 B 143 GLU LEU LYS VAL ALA MET ARG ALA LEU GLY PHE GLU PRO SEQRES 4 B 143 LYS LYS GLU GLU ILE LYS LYS MET ILE SER GLU ILE ASP SEQRES 5 B 143 LYS GLU GLY THR GLY LYS MET ASN PHE GLY ASP PHE LEU SEQRES 6 B 143 THR VAL MET THR GLN LYS MET SER GLU LYS ASP THR LYS SEQRES 7 B 143 GLU GLU ILE LEU LYS ALA PHE LYS LEU PHE ASP ASP ASP SEQRES 8 B 143 GLU THR GLY LYS ILE SER PHE LYS ASN LEU LYS ARG VAL SEQRES 9 B 143 ALA LYS GLU LEU GLY GLU ASN LEU THR ASP GLU GLU LEU SEQRES 10 B 143 GLN GLU MET ILE ASP GLU ALA ASP ARG ASP GLY ASP GLY SEQRES 11 B 143 GLU VAL SER GLU GLN GLU PHE LEU ARG ILE MET LYS LYS SEQRES 1 C 18 ACE ASN TRP LYS LEU LEU ALA LYS GLY LEU LEU ILE ARG SEQRES 2 C 18 GLU ARG LEU LYS ARG SEQRES 1 D 18 ACE ASN TRP LYS LEU LEU ALA LYS GLY LEU LEU ILE ARG SEQRES 2 D 18 GLU ARG LEU LYS ARG HET ACE C 846 3 HET ACE D 846 3 HET CA A1001 1 HET CA A1002 1 HET CA B1001 1 HET CA B1002 1 HETNAM ACE ACETYL GROUP HETNAM CA CALCIUM ION FORMUL 3 ACE 2(C2 H4 O) FORMUL 5 CA 4(CA 2+) FORMUL 9 HOH *384(H2 O) HELIX 1 1 THR A 26 LEU A 39 1 14 HELIX 2 2 GLU A 52 LEU A 60 1 9 HELIX 3 3 LYS A 65 ASP A 77 1 13 HELIX 4 4 PHE A 86 ASP A 114 1 29 HELIX 5 5 SER A 122 LEU A 133 1 12 HELIX 6 6 THR A 138 ASP A 150 1 13 HELIX 7 7 SER A 158 LYS A 167 1 10 HELIX 8 8 THR B 26 PHE B 40 1 15 HELIX 9 9 GLU B 52 LEU B 60 1 9 HELIX 10 10 LYS B 65 ASP B 77 1 13 HELIX 11 11 PHE B 86 ASP B 114 1 29 HELIX 12 12 SER B 122 LEU B 133 1 12 HELIX 13 13 THR B 138 ASP B 150 1 13 HELIX 14 14 SER B 158 LYS B 167 1 10 HELIX 15 15 ASN C 847 LYS C 862 1 16 HELIX 16 16 ASN D 847 LYS D 862 1 16 SHEET 1 A 2 THR A 47 ASP A 49 0 SHEET 2 A 2 LYS A 83 ASN A 85 -1 O MET A 84 N ILE A 48 SHEET 1 B 2 THR B 47 ASP B 49 0 SHEET 2 B 2 LYS B 83 ASN B 85 -1 O MET B 84 N ILE B 48 LINK C ACE C 846 N ASN C 847 1555 1555 1.34 LINK C ACE D 846 N ASN D 847 1555 1555 1.32 LINK OD2 ASP A 114 CA CA A1002 1555 1555 2.48 LINK OD2 ASP A 116 CA CA A1002 1555 1555 2.51 LINK OG1 THR A 118 CA CA A1002 1555 1555 2.51 LINK O LYS A 120 CA CA A1002 1555 1555 2.44 LINK OD1 ASN A 125 CA CA A1002 1555 1555 2.30 LINK OD1 ASP A 150 CA CA A1001 1555 1555 2.28 LINK OD1 ASP A 152 CA CA A1001 1555 1555 2.43 LINK OD1 ASP A 154 CA CA A1001 1555 1555 2.44 LINK O GLU A 156 CA CA A1001 1555 1555 2.36 LINK OE1 GLU A 161 CA CA A1001 1555 1555 2.61 LINK OE2 GLU A 161 CA CA A1001 1555 1555 2.45 LINK CA CA A1001 O HOH A1003 1555 1555 2.35 LINK CA CA A1002 O HOH A1004 1555 1555 2.42 LINK OD2 ASP B 114 CA CA B1002 1555 1555 2.28 LINK OD1 ASP B 116 CA CA B1002 1555 1555 2.50 LINK OG1 THR B 118 CA CA B1002 1555 1555 2.48 LINK O LYS B 120 CA CA B1002 1555 1555 2.40 LINK OD1 ASN B 125 CA CA B1002 1555 1555 2.37 LINK OD2 ASP B 150 CA CA B1001 1555 1555 2.30 LINK OD1 ASP B 152 CA CA B1001 1555 1555 2.39 LINK OD1 ASP B 154 CA CA B1001 1555 1555 2.43 LINK O GLU B 156 CA CA B1001 1555 1555 2.38 LINK OE1 GLU B 161 CA CA B1001 1555 1555 2.56 LINK OE2 GLU B 161 CA CA B1001 1555 1555 2.40 LINK CA CA B1001 O HOH B1003 1555 1555 2.38 LINK CA CA B1002 O HOH B1004 1555 1555 2.42 SITE 1 AC1 6 ASP A 150 ASP A 152 ASP A 154 GLU A 156 SITE 2 AC1 6 GLU A 161 HOH A1003 SITE 1 AC2 6 ASP A 114 ASP A 116 THR A 118 LYS A 120 SITE 2 AC2 6 ASN A 125 HOH A1004 SITE 1 AC3 6 ASP B 150 ASP B 152 ASP B 154 GLU B 156 SITE 2 AC3 6 GLU B 161 HOH B1003 SITE 1 AC4 6 ASP B 114 ASP B 116 THR B 118 LYS B 120 SITE 2 AC4 6 ASN B 125 HOH B1004 CRYST1 60.278 59.419 105.137 90.00 94.67 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016590 0.000000 0.001355 0.00000 SCALE2 0.000000 0.016830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009543 0.00000