HEADER HYDROLASE 19-DEC-06 2OBL TITLE STRUCTURAL AND BIOCHEMICAL ANALYSIS OF A PROTOTYPICAL ATPASE FROM THE TITLE 2 TYPE III SECRETION SYSTEM OF PATHOGENIC BACTERIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESCN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 103-446; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O127:H6; SOURCE 3 ORGANISM_TAXID: 574521; SOURCE 4 STRAIN: E2348/69; SOURCE 5 GENE: ESCN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ATPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ZARIVACH,M.VUCKOVIC,W.DENG,B.B.FINLAY,N.C.J.STRYNADKA REVDAT 8 27-DEC-23 2OBL 1 REMARK REVDAT 7 20-OCT-21 2OBL 1 REMARK SEQADV LINK REVDAT 6 13-JUL-11 2OBL 1 VERSN REVDAT 5 02-JUN-09 2OBL 1 SOURCE REVDAT 4 24-FEB-09 2OBL 1 VERSN REVDAT 3 20-FEB-07 2OBL 1 JRNL REVDAT 2 06-FEB-07 2OBL 1 JRNL REVDAT 1 30-JAN-07 2OBL 0 JRNL AUTH R.ZARIVACH,M.VUCKOVIC,W.DENG,B.B.FINLAY,N.C.STRYNADKA JRNL TITL STRUCTURAL ANALYSIS OF A PROTOTYPICAL ATPASE FROM THE TYPE JRNL TITL 2 III SECRETION SYSTEM. JRNL REF NAT.STRUCT.MOL.BIOL. V. 14 131 2007 JRNL REFN ISSN 1545-9993 JRNL PMID 17237797 JRNL DOI 10.1038/NSMB1196 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 30367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1624 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2636 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.90000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : 1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.932 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2698 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3655 ; 1.084 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 5.270 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;30.090 ;23.519 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;12.675 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.492 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2007 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1228 ; 0.210 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1849 ; 0.322 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 400 ; 0.173 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.231 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.217 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.211 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.218 ; 0.500 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1769 ; 0.897 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2794 ; 1.383 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1006 ; 1.040 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 859 ; 1.592 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6459 -8.4417 12.1881 REMARK 3 T TENSOR REMARK 3 T11: -0.0135 T22: 0.0790 REMARK 3 T33: 0.1155 T12: 0.0342 REMARK 3 T13: -0.0072 T23: 0.0770 REMARK 3 L TENSOR REMARK 3 L11: 6.0816 L22: 0.8973 REMARK 3 L33: 2.1330 L12: 1.1621 REMARK 3 L13: -0.4610 L23: 0.4303 REMARK 3 S TENSOR REMARK 3 S11: -0.0258 S12: -0.1309 S13: -0.4140 REMARK 3 S21: -0.0168 S22: 0.0165 S23: -0.3352 REMARK 3 S31: 0.2045 S32: 0.0906 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9868 -16.1940 15.7349 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.0844 REMARK 3 T33: 0.0899 T12: -0.0046 REMARK 3 T13: -0.0309 T23: 0.1088 REMARK 3 L TENSOR REMARK 3 L11: 9.4218 L22: 4.4811 REMARK 3 L33: 18.9694 L12: -3.3608 REMARK 3 L13: 3.7142 L23: -3.4595 REMARK 3 S TENSOR REMARK 3 S11: 0.3327 S12: -0.0913 S13: -1.1000 REMARK 3 S21: -0.3433 S22: -0.0666 S23: 0.3668 REMARK 3 S31: 0.3525 S32: -1.1684 S33: -0.2661 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1066 4.1911 23.1438 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: 0.0749 REMARK 3 T33: -0.0130 T12: 0.0064 REMARK 3 T13: 0.0138 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.3421 L22: 5.8276 REMARK 3 L33: 3.4781 L12: -0.8706 REMARK 3 L13: 1.2052 L23: -2.5855 REMARK 3 S TENSOR REMARK 3 S11: -0.0733 S12: -0.4520 S13: -0.1078 REMARK 3 S21: -0.0649 S22: 0.0861 S23: -0.0468 REMARK 3 S31: 0.3651 S32: -0.0658 S33: -0.0128 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9300 8.3095 10.1082 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.0900 REMARK 3 T33: 0.1061 T12: -0.0123 REMARK 3 T13: 0.0075 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 1.5734 L22: 1.8367 REMARK 3 L33: 0.5300 L12: -0.0902 REMARK 3 L13: 0.7650 L23: 0.4941 REMARK 3 S TENSOR REMARK 3 S11: -0.1224 S12: 0.0242 S13: 0.0422 REMARK 3 S21: -0.1106 S22: 0.1327 S23: -0.2101 REMARK 3 S31: -0.0884 S32: 0.0741 S33: -0.0103 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8834 4.8815 6.5412 REMARK 3 T TENSOR REMARK 3 T11: 0.0306 T22: 0.0699 REMARK 3 T33: 0.1294 T12: 0.0072 REMARK 3 T13: -0.0075 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 2.3672 L22: 2.6791 REMARK 3 L33: 1.6787 L12: 0.4149 REMARK 3 L13: 0.3252 L23: 0.9445 REMARK 3 S TENSOR REMARK 3 S11: -0.1057 S12: 0.0460 S13: 0.3468 REMARK 3 S21: -0.2775 S22: 0.0213 S23: -0.1935 REMARK 3 S31: -0.1868 S32: 0.0099 S33: 0.0844 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 216 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2777 -2.6527 11.5736 REMARK 3 T TENSOR REMARK 3 T11: 0.0410 T22: 0.1098 REMARK 3 T33: 0.0914 T12: 0.0155 REMARK 3 T13: -0.0049 T23: 0.0520 REMARK 3 L TENSOR REMARK 3 L11: 1.6059 L22: 1.2598 REMARK 3 L33: 0.8038 L12: -0.2944 REMARK 3 L13: 0.1543 L23: -0.0089 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: -0.1714 S13: 0.0015 REMARK 3 S21: 0.0791 S22: -0.0119 S23: -0.1551 REMARK 3 S31: 0.0310 S32: 0.0920 S33: 0.0596 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 265 A 289 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3608 -9.7622 -1.4364 REMARK 3 T TENSOR REMARK 3 T11: 0.0629 T22: 0.0505 REMARK 3 T33: 0.1107 T12: 0.0331 REMARK 3 T13: 0.0011 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.4466 L22: 3.1385 REMARK 3 L33: 2.5322 L12: 0.4533 REMARK 3 L13: 0.7500 L23: 1.4778 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: 0.0932 S13: -0.1088 REMARK 3 S21: -0.0985 S22: -0.1110 S23: 0.2225 REMARK 3 S31: 0.1485 S32: -0.0167 S33: 0.0606 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 290 A 345 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0327 -2.8846 8.4402 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: 0.0732 REMARK 3 T33: 0.0736 T12: 0.0054 REMARK 3 T13: 0.0024 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 1.7764 L22: 1.2168 REMARK 3 L33: 1.4621 L12: 0.0336 REMARK 3 L13: 0.0636 L23: 0.5670 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: -0.1150 S13: -0.0880 REMARK 3 S21: 0.0499 S22: -0.0165 S23: 0.0292 REMARK 3 S31: 0.0835 S32: 0.0056 S33: 0.0194 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 346 A 371 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3859 14.5969 9.5927 REMARK 3 T TENSOR REMARK 3 T11: 0.0894 T22: 0.0676 REMARK 3 T33: 0.1017 T12: -0.0009 REMARK 3 T13: -0.0135 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 2.1391 L22: 2.3935 REMARK 3 L33: 3.7123 L12: 0.5088 REMARK 3 L13: 0.0583 L23: -0.4390 REMARK 3 S TENSOR REMARK 3 S11: -0.0863 S12: 0.1228 S13: 0.1729 REMARK 3 S21: -0.1442 S22: 0.0507 S23: 0.1604 REMARK 3 S31: -0.2423 S32: -0.0744 S33: 0.0356 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 372 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2529 19.6658 21.4126 REMARK 3 T TENSOR REMARK 3 T11: 0.0672 T22: 0.0784 REMARK 3 T33: 0.0928 T12: 0.0584 REMARK 3 T13: -0.0102 T23: -0.1243 REMARK 3 L TENSOR REMARK 3 L11: 4.7816 L22: 8.1395 REMARK 3 L33: 17.2379 L12: -3.8952 REMARK 3 L13: 1.8939 L23: -7.2530 REMARK 3 S TENSOR REMARK 3 S11: 0.0452 S12: -0.1131 S13: 0.2271 REMARK 3 S21: 0.0652 S22: -0.1792 S23: 0.4236 REMARK 3 S31: -0.6865 S32: -0.8090 S33: 0.1340 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 390 A 418 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9308 34.1884 8.9529 REMARK 3 T TENSOR REMARK 3 T11: 0.3691 T22: 0.0390 REMARK 3 T33: -0.0770 T12: 0.1908 REMARK 3 T13: -0.0282 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 14.3947 L22: 4.4495 REMARK 3 L33: 4.6649 L12: 2.9107 REMARK 3 L13: 3.8354 L23: -2.9748 REMARK 3 S TENSOR REMARK 3 S11: 0.2633 S12: -1.1504 S13: 0.3735 REMARK 3 S21: 0.7584 S22: 0.0856 S23: 0.1013 REMARK 3 S31: 0.0752 S32: 0.1761 S33: -0.3489 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 419 A 446 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2242 23.8294 19.2014 REMARK 3 T TENSOR REMARK 3 T11: 0.1656 T22: -0.0118 REMARK 3 T33: 0.0560 T12: -0.0442 REMARK 3 T13: -0.0268 T23: -0.0805 REMARK 3 L TENSOR REMARK 3 L11: 2.9760 L22: 1.7449 REMARK 3 L33: 5.2598 L12: -0.5278 REMARK 3 L13: -1.0808 L23: 1.1444 REMARK 3 S TENSOR REMARK 3 S11: 0.0555 S12: -0.2271 S13: 0.4399 REMARK 3 S21: -0.0579 S22: 0.0478 S23: -0.2042 REMARK 3 S31: -0.7396 S32: 0.3259 S33: -0.1032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973952 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32089 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 15.30 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 182.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 8000, 0.1M CALCIUM ACETATE, 0.1 REMARK 280 M IMIDAZOLE, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.19100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.80450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.19100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.80450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS MONOMER IN SOLUTION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A1001 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 100 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 143 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1425 O HOH A 1526 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 141 -84.45 -105.48 REMARK 500 ASP A 143 133.97 -29.95 REMARK 500 PRO A 144 22.18 -48.82 REMARK 500 LEU A 145 74.38 -107.83 REMARK 500 LEU A 165 45.90 -143.34 REMARK 500 ALA A 357 46.88 -85.03 REMARK 500 TYR A 402 50.52 -97.21 REMARK 500 THR A 403 -109.92 -39.57 REMARK 500 GLN A 406 91.74 -55.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 328 OD1 REMARK 620 2 ASN A 328 OD1 78.4 REMARK 620 3 ASP A 333 OD1 114.4 144.8 REMARK 620 4 ASP A 333 OD2 77.3 155.4 52.4 REMARK 620 5 ASP A 333 OD1 144.5 115.2 74.3 83.7 REMARK 620 6 ASP A 333 OD2 156.0 77.9 83.9 126.6 52.7 REMARK 620 7 HOH A1297 O 82.1 77.2 72.7 102.4 131.7 89.5 REMARK 620 8 HOH A1297 O 77.0 82.4 131.4 89.1 72.9 103.0 153.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 1295 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OBM RELATED DB: PDB REMARK 900 STRUCTURAL AND BIOCHEMICAL ANALYSIS OF A PROTOTYPICAL ATPASE FROM REMARK 900 THE TYPE III SECRETION SYSTEM OF PATHOGENIC BACTERIA DBREF 2OBL A 103 446 UNP O52140 O52140_ECOLI 103 446 SEQADV 2OBL GLY A 100 UNP O52140 CLONING ARTIFACT SEQADV 2OBL SER A 101 UNP O52140 CLONING ARTIFACT SEQADV 2OBL HIS A 102 UNP O52140 CLONING ARTIFACT SEQADV 2OBL PRO A 393 UNP O52140 VAL 393 ENGINEERED MUTATION SEQRES 1 A 347 GLY SER HIS LYS ILE ARG VAL GLY ASP ALA LEU LEU GLY SEQRES 2 A 347 ARG LEU ILE ASP GLY ILE GLY ARG PRO MET GLU SER ASN SEQRES 3 A 347 ILE VAL ALA PRO TYR LEU PRO PHE GLU ARG SER LEU TYR SEQRES 4 A 347 ALA GLU PRO PRO ASP PRO LEU LEU ARG GLN VAL ILE ASP SEQRES 5 A 347 GLN PRO PHE ILE LEU GLY VAL ARG ALA ILE ASP GLY LEU SEQRES 6 A 347 LEU THR CYS GLY ILE GLY GLN ARG ILE GLY ILE PHE ALA SEQRES 7 A 347 GLY SER GLY VAL GLY LYS SER THR LEU LEU GLY MET ILE SEQRES 8 A 347 CYS ASN GLY ALA SER ALA ASP ILE ILE VAL LEU ALA LEU SEQRES 9 A 347 ILE GLY GLU ARG GLY ARG GLU VAL ASN GLU PHE LEU ALA SEQRES 10 A 347 LEU LEU PRO GLN SER THR LEU SER LYS CYS VAL LEU VAL SEQRES 11 A 347 VAL THR THR SER ASP ARG PRO ALA LEU GLU ARG MET LYS SEQRES 12 A 347 ALA ALA PHE THR ALA THR THR ILE ALA GLU TYR PHE ARG SEQRES 13 A 347 ASP GLN GLY LYS ASN VAL LEU LEU MET MET ASP SER VAL SEQRES 14 A 347 THR ARG TYR ALA ARG ALA ALA ARG ASP VAL GLY LEU ALA SEQRES 15 A 347 SER GLY GLU PRO ASP VAL ARG GLY GLY PHE PRO PRO SER SEQRES 16 A 347 VAL PHE SER SER LEU PRO LYS LEU LEU GLU ARG ALA GLY SEQRES 17 A 347 PRO ALA PRO LYS GLY SER ILE THR ALA ILE TYR THR VAL SEQRES 18 A 347 LEU LEU GLU SER ASP ASN VAL ASN ASP PRO ILE GLY ASP SEQRES 19 A 347 GLU VAL ARG SER ILE LEU ASP GLY HIS ILE VAL LEU THR SEQRES 20 A 347 ARG GLU LEU ALA GLU GLU ASN HIS PHE PRO ALA ILE ASP SEQRES 21 A 347 ILE GLY LEU SER ALA SER ARG VAL MET HIS ASN VAL VAL SEQRES 22 A 347 THR SER GLU HIS LEU ARG ALA ALA ALA GLU CYS LYS LYS SEQRES 23 A 347 LEU ILE ALA THR TYR LYS ASN PRO GLU LEU LEU ILE ARG SEQRES 24 A 347 ILE GLY GLU TYR THR MET GLY GLN ASP PRO GLU ALA ASP SEQRES 25 A 347 LYS ALA ILE LYS ASN ARG LYS LEU ILE GLN ASN PHE ILE SEQRES 26 A 347 GLN GLN SER THR LYS ASP ILE SER SER TYR GLU LYS THR SEQRES 27 A 347 ILE GLU SER LEU PHE LYS VAL VAL ALA HET CA A1001 1 HET ACT A1201 4 HET IMD A1295 5 HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM IMD IMIDAZOLE FORMUL 2 CA CA 2+ FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 IMD C3 H5 N2 1+ FORMUL 5 HOH *232(H2 O) HELIX 1 1 GLY A 107 LEU A 111 5 5 HELIX 2 2 VAL A 158 LEU A 165 1 8 HELIX 3 3 GLY A 182 ALA A 194 1 13 HELIX 4 4 ARG A 207 ALA A 216 1 10 HELIX 5 5 PRO A 219 SER A 224 1 6 HELIX 6 6 PRO A 236 ASP A 256 1 21 HELIX 7 7 SER A 267 SER A 282 1 16 HELIX 8 8 PRO A 292 GLU A 304 1 13 HELIX 9 9 ASP A 329 LEU A 339 1 11 HELIX 10 10 THR A 346 GLU A 351 1 6 HELIX 11 11 ASP A 359 SER A 363 5 5 HELIX 12 12 VAL A 367 VAL A 372 1 6 HELIX 13 13 THR A 373 TYR A 390 1 18 HELIX 14 14 PRO A 393 ARG A 398 1 6 HELIX 15 15 ASP A 407 ASN A 416 1 10 HELIX 16 16 ASN A 416 GLN A 425 1 10 HELIX 17 17 SER A 433 VAL A 445 1 13 SHEET 1 A 2 LYS A 103 VAL A 106 0 SHEET 2 A 2 PHE A 133 SER A 136 -1 O PHE A 133 N VAL A 106 SHEET 1 B 6 LEU A 114 ILE A 115 0 SHEET 2 B 6 CYS A 226 THR A 231 1 O LEU A 228 N ILE A 115 SHEET 3 B 6 ILE A 198 ILE A 204 1 N LEU A 203 O VAL A 229 SHEET 4 B 6 ASN A 260 ASP A 266 1 O ASP A 266 N ALA A 202 SHEET 5 B 6 SER A 313 LEU A 321 1 O SER A 313 N VAL A 261 SHEET 6 B 6 GLY A 307 PRO A 308 -1 N GLY A 307 O ILE A 314 SHEET 1 C 8 LEU A 114 ILE A 115 0 SHEET 2 C 8 CYS A 226 THR A 231 1 O LEU A 228 N ILE A 115 SHEET 3 C 8 ILE A 198 ILE A 204 1 N LEU A 203 O VAL A 229 SHEET 4 C 8 ASN A 260 ASP A 266 1 O ASP A 266 N ALA A 202 SHEET 5 C 8 SER A 313 LEU A 321 1 O SER A 313 N VAL A 261 SHEET 6 C 8 ARG A 172 ALA A 177 1 N ILE A 173 O TYR A 318 SHEET 7 C 8 GLY A 341 VAL A 344 1 O ILE A 343 N GLY A 174 SHEET 8 C 8 ALA A 364 SER A 365 -1 O ALA A 364 N HIS A 342 SHEET 1 D 2 PRO A 153 PHE A 154 0 SHEET 2 D 2 CYS A 167 GLY A 168 -1 O CYS A 167 N PHE A 154 LINK OD1 ASN A 328 CA CA A1001 1555 1555 2.38 LINK OD1 ASN A 328 CA CA A1001 2555 1555 2.37 LINK OD1 ASP A 333 CA CA A1001 1555 1555 2.47 LINK OD2 ASP A 333 CA CA A1001 1555 1555 2.45 LINK OD1 ASP A 333 CA CA A1001 2555 1555 2.46 LINK OD2 ASP A 333 CA CA A1001 2555 1555 2.43 LINK CA CA A1001 O HOH A1297 1555 1555 2.47 LINK CA CA A1001 O HOH A1297 1555 2555 2.47 CISPEP 1 GLU A 140 PRO A 141 0 -6.65 CISPEP 2 LEU A 145 LEU A 146 0 -2.98 CISPEP 3 ASP A 266 SER A 267 0 11.99 CISPEP 4 PHE A 355 PRO A 356 0 -3.90 CISPEP 5 GLY A 405 GLN A 406 0 0.34 SITE 1 AC1 3 ASN A 328 ASP A 333 HOH A1297 SITE 1 AC2 3 ARG A 273 ARG A 276 HOH A1396 SITE 1 AC3 6 LEU A 203 ILE A 204 GLU A 206 VAL A 211 SITE 2 AC3 6 ASP A 266 HOH A1319 CRYST1 84.382 77.609 52.901 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011851 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018903 0.00000